NONHSAT123084
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123084 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2104 nt |
Genomic location |
chr7-:124382366..124384470 |
Exon number |
1 |
Exons |
124382366..124384470 |
Genome context |
|
Sequence |
000001 TAGCAGCCTT GTGGGAAATA TTAAAGAAAA TATGCACCAA GGCCATCTAA TAATAGGACC ATGTTTTGAA AGATGTTTAC 000080
000081 ATGGTGGTGC TTCAGGAAAT GGGGCTTTGC TTTTAAGGTT TTTGAGTATG GAGAAATAGT ATCACAGCTC TGCAATAGGA 000160 000161 AGATCAACTT GCAAACAGTT TAAATAGGCT GGTAGGGGAC AGTCTGATCA TGAAAAAGCA ACTAGGAAGC TATTATAAGA 000240 000241 GATTGAACCA CAATGGAGGC AGCAGGAACT TAAATTTCTT TTTTCATTTA TACTTGCCTT TCAACTTTTT GTAGTTGCAA 000320 000321 CATGTACTTT CTTATTGAAT CCTACCTCTG TCAAAGTGGA AACTTTGATA ACTCAAATTG TCCCAAGTAT AAAGTGATTT 000400 000401 CAAAGTTTTC TCATAGTCGT CTTGTGTTTT TCACAAAATC CAATTTCTAT AATATACTTT TAAAAAATTG TTAATCATTT 000480 000481 CTGTTCAACA TTTCTTCAGT CTGGATCTTA TCCAATGTCT TATGCTCCTC GTTAAACAAC AAAAAAAAAA AAAAAAAAAA 000560 000561 AGAAAAAGAA ACTCACATCT AAGATTAAGT TCAGTAAAAT TTTGATTAAT CAGAAAATGC TAGGAATGGC GTTTTTGTTA 000640 000641 CTTAACAGTA ACACTTTTGT GGTTTCAGGG TAGTCAATGA AAATATTTTC AAAATATATG TCTATATCTA TAACTGGATA 000720 000721 TAATTAACTC AATTTAACAT TTATTTGATG ATCCACAATT TTGAAGCCTT TGAATGTTTG ACTTCAAGCA GCAAGAAAGA 000800 000801 TGGAGTGATA GTGGGAAGGT AAAGGTGAAG TGGTACTCTG AGGGATCAGT GGTTGAGAGG GAAGAGGTAG GAAGAAGAGC 000880 000881 TTCACAGAGG AAAAGGATCA AATCCTTATT GTTCCATATT ATAGATGTAA GTTACTGAAT TCTAAGAAAA TGCTGATACT 000960 000961 TATTTTAAAA ACTGTATCCC TAATCTTTTT TCCTCATCAG TTCCTTATTT CTCATAAAAG TAAAATTAGA ATAAAAGATC 001040 001041 CATTTCTTTA GGAATTATGG TGAGATTGAT TTTAGTATGT TATGTAACGT AGCAAGTGAT ACTGAGTGCA GGGCATTTTA 001120 001121 AGTAACAGCT CTTTCATTAT ATCTCAGCTA ATTTATTCAA CAACTATTGA ATGAGTACTG TTATATGTTA AACACCATTG 001200 001201 TAGGTGCATG TGATATAGCT GTGAACAAAA CATCAAGAAG CTTTGCCCTC TCTTGTTGAG ACAGACAGAC ACTATAAATA 001280 001281 AGGAGAATAC ATAGTATATA GTTTTTAGAA TACATAGCAT TTTTGGTAGT GAAAATTACC ATGGAGGAAA GGAGTACCAG 001360 001361 GGTAAGGTGG GGTTATGAAG AAGATCTTAC TGCTAATATG ACATCAAATT AAGGCTTGAA GAGAGCAATC AAGTCTTATA 001440 001441 GCAACTGGGG GGAAAAGGTT CTGAGGTAGG AATATGTCTG ATAGGTTTCA GGAATGTAAA GCAGCTAGTG AAGCTAGAAA 001520 001521 AGAAGGAAGA GGAAGAGAAG TAGCAGTTGA GATCAAAGAG CTAAAGGGAG GCCTTGTAAA CTATTGTAAT GACTGCTTTT 001600 001601 TATTCTGAGT AACACACCAC TGGAGGGTTT TAGATGAAGT GATCTGATTT TTTTCAAACT AACAATTTAA TTTTAATATT 001680 001681 ACCATATAGT TAATATACAG TAAATTCACT CCTGTTAGCA CACAGTCCTG AGCATGCACA GTTGTGTAAC CACCACTACA 001760 001761 AAGTATAAAA CAGTATCATT ATTTCAGAAA ATCTTCCCAT CCCCATTTGT AGCCAACTTT ATTCCATTCT CTGCCCAACC 001840 001841 ACGGTCTTCT GTCTTTTTTG ATTGTTGCAG AATGTCATAT AAATGGAATT GTATCGTACG TAGCATTTCC ATCTGGCTTC 001920 001921 TTTCACTAGC AGAGTACGTT GGATGTTCAT CCATGTTGTG TGTATCAGTA GTTTGTCTCT ATTGCTGAGG AGTATTCCAT 002000 002001 TGTATGAATG TACCACTGTG TGTTTATGCA TTTCTTGTTC AGTTGAGGGA CATTTGAATT GTTTCAAAAC TTGGTGATTA 002080 002081 TTAATAAAGC CACTATAAAT GTCC |
Predicted Small Protein
Name | NONHSAT123084_smProtein_1733:1987 |
Length | 85 |
Molecular weight | 9572.3091 |
Aromaticity | 0.154761904762 |
Instability index | 55.044047619 |
Isoelectric point | 8.87945556641 |
Runs | 16 |
Runs residual | 0.0564907491659 |
Runs probability | 0.0518404433846 |
Amino acid sequence | MHSCVTTTTKYKTVSLFQKIFPSPFVANFIPFSAQPRSSVFFDCCRMSYKWNCIVRSISI WLLSLAEYVGCSSMLCVSVVCLYC |
Secondary structure | LLLEEEELLEEEEEEEEELLLLLLLLLLEELLLLLLLLLEEEEELEEEEEELEEEEHHHH HHHHHHHHLLLLLEEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHH HHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | ooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiTTTTTTTTT TTTTTTTTTTTTTTTToooooooo |