NONHSAT123231
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123231 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2732 nt |
Genomic location |
chr7-:128296016..128298845 |
Exon number |
2 |
Exons |
128296016..128296940,128297039..128298845 |
Genome context |
|
Sequence |
000001 ATGTACTTGG CCCACAGGCC CCTGATGTCT GCGTCCAGCG AGGCCTCCAG TGGCGTCAGC ATGTTTGTGT GGAGGAACGT 000080
000081 GGAACCTTGC TCTGTGGCTG TGTTCTCCTG GTACTCTGTC CCCTTCCTGA CCCCTCCCTG CAGCTATGTG AGGTCCAGCA 000160 000161 ACCTGCCAGT CACTCAGTGG CCTCCAACCA GAGCAAAGAA CCTGCCAAGT CAGCAGCTGT TGCTCATGAG TGTCCACCAG 000240 000241 GTGGGACAGG GAGTGCTGAC CCTGGGTGGC CCCCTGGAGC CACCTGCCCT GAAAGCCCAG GGCCCGCAAC CCCACACACT 000320 000321 TTGGGGGTGG TGGAACCTGG TAAAAGCTCA CCTCCCACCA TGGAGGAGGA GCCCTGGGCC CCTCAGGGGA GTCCCTGCTG 000400 000401 GACAGTGAGA CAGAGAATGA CCATGATGAT GCTTTCCTCT CCATCATGTC TCCTGACACC CAGTTGCCTC TACCAGCCAG 000480 000481 ATGATGTCAG GCCCAGTCCC TCAGTGCCCT GCGCAAGGAA CAGGACTCAT CTTCTGAGAA GGATGGATGC AGCCCCAACA 000560 000561 AATGGGACAA GGACCACATC CGGTGGCCCA TGAGTGGCGG TCATGATCTT CAGCAAGCGG CACCAGGCCC TGGCAGGGCG 000640 000641 CACCAGGGTC ACCCCAACCA GGACAACCGG ACCGTCAGCC AGATGCTGAG CAAGCGGTGG TACACCCTGG GGCCCAATGA 000720 000721 GACGCAGAAA TACCACGACC TGGCCTTCCA GGTGAAGGTG GCCCACTTGC AACAAGGACC GAAAGAAGTC CAGCTCAGAG 000800 000801 GCCAAGCCCA CAAGCCAGGG GCTAGCAGGA GTGTAACAAG GGCTCGTGGG AGCGGAGAAT ATCAGAGACG GGCACTGCCA 000880 000881 CTGCCCCTGG GGTGTCCTCT GAACTCCTGT CAGTTGCAGC CCAAACACTC CAGAGCTCGG ATACCAAGGA GCAGCTTCTG 000960 000961 TGGGGCAGAA TGGCTGCACA CAGTCAGGGA ACCTGGCTTA GCCTGGCCCA AGCCTTCTCC CACAGTGGGG TACACAGCCT 001040 001041 GGACGGCAGG GAAATAGACC GTCAGGCACT ACGGGAACTG ACACAGGTGG TGTCTGGCAC TGCATCATAC TCTGGCCCAA 001120 001121 AGCCTTCTAC TCAGTATGGA GCTCCAGGCC ACTTTGCAGC CCCTGGTGAG GGAGGTGACC AGTGGGCAGC CCTGCTGCTG 001200 001201 CCCACCTGAG CTGCTCATTC CCAGCACATG GCCAGTGAGG ACATAGCAAG TGACGAGGAG CACACGGTCA TCCATGAGGA 001280 001281 GGAGGGGGTG ATGATGTCAT TGCTGATGAT GGCTTTAGCA CCACTGACAC CGATCTCAAG TTCAAGGAGT GGGTGACCGA 001360 001361 CTGAGAGTGG GGACAACTCT GGGGAGGAGC CAGAGGGCAA CAAGGGCTTT GGTGGGAAGG TATTTGCACC TGTCATTCCT 001440 001441 TCCTCCTTTA CTCCTGCCGC CCCTTGCTGG ATCCTGAGCC CCCAGGGTCC CCCGATCCAC CTGCAGCTTT TGGCAAAGTC 001520 001521 TATGGTCCCA CCTTGTCCTC CTCCTACACA TACTCGGATG CTTCCTCCTC AACCTTGGCA CCCACCTCCT TCTTACTGGG 001600 001601 CCCAGGAGCC TTCAATGCCC AGGAGTCTGG TCAAGGCAGC AGAGCGGGCC CCCTACGGCC CCTACCCCTG GGGATGGGGG 001680 001681 CCCAGGGACG CCTTCCAAGG TGACCTGTTT CCTCCCAATG GATCCTGCCA CCTTCTGGTG CAAGAGACCT GAAAGTGTGG 001760 001761 GCGACCTGGA GCTACCAGGC TCCTCAGTCA TCAGGGTCCC TCCCAACCAC GGACATGGAT CCCACACTGG AGGACCCCAC 001840 001841 CACGCCCAAA TGCAAGATGA GAAGATGCTC CAGCTGCAGT CCAAAGCCCA ACACCCCCAA GTGTGCCATG TGTGATGGGG 001920 001921 ACAGCTTCCC CTTTGCCTGT ACAGGTGGAG AAGCCAAGGA CAGGCTCAGG GAACCGGAGA CCGAGAAGGC GCTGTCCTCT 002000 002001 TCACTGCACG TGCCCTGGAC CAGTGCCGGC CCTGATCATG CAGCTCTTCC AGGCCCACTG CTTCTTCCTG TCCACTAGGC 002080 002081 CACAGCCGCC CTCCAGGCCC ACTATGCACA CATCTTCCCC TCCAAGGTTT GTTCTGCCCC TGCCCTGACT CCCAGCCCTG 002160 002161 TGGGGGTCCT GACCGCACCT CACCTGGCTC AGACTCTTGA CGCTGCCCTG GCTGCCCCAC CACTGCCTCT GCCCGAGAGT 002240 002241 CACGTGAGGC TGAGAGTAGG GGCAGGGGCA GCAGTGGTGC CAGTTGGGGG GCGGTCCAGT GGGAGGAGCC TCAGCCTCAC 002320 002321 GGGCTGCTCC GTGGGACTGA TGACTGCATG ATCTTCTGGG CACCTCACGG ATCTTCAACT GCAGGTGAAA CGGATGCTGG 002400 002401 TGGTGGGTGC AGGGCCGCTG GGAGCTGCTG CATGGTTCCC AGAGGCTGGA CTGGGGCAGG TGCCAACTGA AGCTGCTGGG 002480 002481 GCAGCATGGG CAGGATGTTC TGCACACAAA CCTTGGAGAA GACGATGTGT GCATAGCGGG TCCACTGCTG CTGCCCCTGC 002560 002561 CCTGACTCCC AGCCCTGCCT GACCCCACCT CAACCTGCTC AGGCTCTGGC GCAACCCTGG CTGCCCTGCC ACTGCCTCTG 002640 002641 CCCCAGAGTT GGGGCCTTGA CAGCCTGGTT GGAAGGGGAC ACCCCAGCCC TGCCTAAACA CCTGGGGGGT CTCCATAACT 002720 002721 ACCACAGGCA GG |
Predicted Small Protein
Name | NONHSAT123231_smProtein_1814:2077 |
Length | 88 |
Molecular weight | 9319.5776 |
Aromaticity | 0.0344827586207 |
Instability index | 66.0908045977 |
Isoelectric point | 6.25140380859 |
Runs | 9 |
Runs residual | 0.0348111658456 |
Runs probability | 0.0401185499225 |
Amino acid sequence | MDPTLEDPTTPKCKMRRCSSCSPKPNTPKCAMCDGDSFPFACTGGEAKDRLREPETEKAL SSSLHVPWTSAGPDHAALPGPLLLPVH |
Secondary structure | LLLLLLLLLLLLLLLLEELLLLLLLLLLLEELLLLLLLLLLLLLLLHHHLLLLHHHHHHH LLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |