NONHSAT123485
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123485 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2586 nt |
Genomic location |
chr7-:134777115..134855447 |
Exon number |
3 |
Exons |
134777115..134779334,134853501..134853812,134855404..134855447 |
Genome context |
|
Sequence |
000001 CAGAGTTTGG GCGCCAGGCG AGACGGCAGG GCTTAAAGTT CCGGGAATCA AAGATCAACT CCCACTGAGG ACAAATGGAC 000080
000081 CTGTAATTCC GGGTGTGACG AGAGAACGAG ATTTACCTTC CTGAATTAAA AAACAGGTCA TTAAGCTTGG GCCCTGACTC 000160 000161 TTCTTTGTGA GAAGGTACAG AGATGGAAAC CTTACAATCC GAGACTAAAA CGAGGGTCCT TCCCTCATGG CTGACAGCCC 000240 000241 AGGTGGCTAC AAAGAATGTG GCACCAATGA AGGCCCCCAA GAGGATGAGA ATGGCAGCAG TGCCAGTGGC AGCAGCAAGG 000320 000321 TGCGACAGCT CTGGTCAGAA GACTCCTGCG AATCTGAGCA ACTAAGAGGT CTTTCTTGGC TCTATGAGAA CCTGGTGGGA 000400 000401 TTCCTGAAGA TAAAGTCCAC AAAAATGAAG CTCCAGACAA GACTATGGCC ACCAGGAGTT TCTCACTTTC AAGCTAGTGC 000480 000481 GCACTCAGCC TCTGGCAATT TGTTAAAATC ACTGTTTAAG TGTTCCTACC AGTTTATGAT TCTAGCAGCT TCTGCCTCAG 000560 000561 ACAAGCAGAT CTCAGCAGTG ACTCCCTGGA TTCGTCTGTC TCTTCAGATT TCAGGGTAGT AGTTTACTTG TCAGCCTCAG 000640 000641 TTCTCTGATG GATCCAATAA GTTGCTGATT TTTAGTTTGT TCAGCTTTTT TGTTGTTGTA AGGACAGGAA TGTTGACTTT 000720 000721 CAAGCATTAT TCATGTTGCA GCTAAAACGA GAAGGCCCCT TATTATCTGT TTAAATAGTA AGTCTATATT TTCTTCTAAG 000800 000801 AGTAGTTTTA ACTCCTACAT TTGTTTCTGT GATCCATTTT TTATTATTTT TAGTGTATGG TATAAGGAAC ACGGCCAACT 000880 000881 TCATTCTTTT GCATGTGGAT ATCCAGTTGT CCCAGTACCA TTTGCTGAAA AGACTATTTT TTTTCCCCAT CCAATTGTCC 000960 000961 TGGCATCTTT GTTGAAAAAT CAATTGAAAT ATATATAAAG GTTTATTTAC ATATTTTCAA TCCTATTTCA TTTATCTATA 001040 001041 TGTTTACCCT TAGGCCAGTA CCACACAGTC TCAATTACTA TAGCTTGGTA GTCAGTTTTG AAATCAGGAA TCCTTAAACA 001120 001121 TTGTTCTTTA TCAAAATTGC TTTGGTTATT CTGGGTCCCT TGTATTTCCA TATAAATTTC AGATTTGGTT TGTTAGTTTC 001200 001201 TGCACAAAAG GTAGCTGACA TTTTGATAGG GATTGCATTG AATCTATCAA TTTGAGGAGT ATTGCCATCT AGCAATATTA 001280 001281 AATCTTCTGA TCCATGACCA GAGTTATCTT GCCATTTATT TAAAGCTTCT TTAATACAGT TCAACTGTGT TTTTTGTAGT 001360 001361 TTTCAGTTTA TAAGTCTTGT ACTTCTTTTG TAAAATTTAT TCCTAAGTAT TTTGTTCTTT TTGATGCTAA TGTAAATGGA 001440 001441 ATTGTTTTCT TAATTTCATT TTTTAAATGT TCATTGCTAG TGTATAGAGA TACAATTGAT TTTTATAACA GGTTTTTGAG 001520 001521 ATGTAATTCA CATACCATAC AGTTCATTCA TTACAACTGA TTTTTGCCTA TTGATCTTTT ATCCTGCAAC CTTGTTGAAC 001600 001601 TCATTTATTA GTGCTAATAG TGTGGCGTGT GTATGTGTGT GTGTGTGTTC CTTCAGATTT TCTATATACA AGAACATATA 001680 001681 TCCTACAAAT AGAAATGGCT TCGCTTTTTT CTTTCTAATT TGGATGCCTT TTTTTTTTTC TTGCCTTATT GCCCGGCTGA 001760 001761 AGCCTTCATT ATAATGTTGA ATAGAAGTGT TGAGAGTGAA TATCCCTGTC TTGTTCCAGG TCTCAGGGAG AAAAGCATTT 001840 001841 AGTCTTGCAC TACCAACTAT GACATTAGCT GCAGGATTTT TGAAGATGGC TTTTTTTTTT TAGTAGAGGA AGATTCTATC 001920 001921 TTTCCTAATT TGTTGAGTGT CTCTTTTTTA ATCATGAAAG AATGTTGGAT TTTGCCAGAT ACTTTTTCTG CATCTATTGA 002000 002001 GATGACCATG TGCCTTTTTC TTTATATTCT ATTAACATGG TATATTATAT TGTTTAATTT TCATAATTTC ATATGCTAAA 002080 002081 CTAACCTTGC ATTTCTGGGA TAAATCCTAT TTGGTCATTG TGTATAATCC CTTTTGGTTT GCTAGTATTT TCTCTTACTT 002160 002161 TTTCATTCTA ATTCTTAATA GATATAGAAG TTGGTTAAAA AAAAAGTTCA ATTTATTTGG CCCCTGAAAT CTTAACAATT 002240 002241 ACCTTTTCTG AGAAACCTTT TCTGATTTGC TCCTACCCAC AAACAACTCC GATGTAACCC CATAACACAA TAAGTAGCAT 002320 002321 TTGTTTCATA TTACTATGTC TATTTACTTG TCACCCACTC TGCTATATTT TATTTACCAT TGTACCCAAG TGTCTGGCAC 002400 002401 AACCACTTAC TATTACAAGT TGGGACTTCT GGGAAGCAGA GAAACATCAG ATTTTTAAAA GAACATGAAC AACAATGGAA 002480 002481 AGATTATGTA ACAAAGGTTG AATATAAGAG AGTGGATAAA CCATAGAATA GTTTCAGGAT GATTAAACCT CAAATAAACC 002560 002561 AAGATTTGAA AAAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT123485_smProtein_182:364 |
Length | 61 |
Molecular weight | 6441.4688 |
Aromaticity | 0.0166666666667 |
Instability index | 63.6766666667 |
Isoelectric point | 10.545715332 |
Runs | 8 |
Runs residual | 0.0164007092199 |
Runs probability | 0.0398560325032 |
Amino acid sequence | METLQSETKTRVLPSWLTAQVATKNVAPMKAPKRMRMAAVPVAAARCDSSGQKTPANLSN |
Secondary structure | LLLLLLLLLLLLLLHHHHHHHHHHLLLLLLLLHHHEEEELHHHHHLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |