NONHSAT123693
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123693 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4359 nt |
Genomic location |
chr7-:140419593..140426316 |
Exon number |
3 |
Exons |
140419593..140421126,140422072..140423908,140425329..140426316 |
Genome context |
|
Sequence |
000001 GAGAATTTGC AGCCTTCAAG TAGCCACCAT CATGGCAGCA TCTGCTCTTA TTTCTTAAGT CTTGTGTTCG TACAATTTGT 000080
000081 TAACATCAAA ACACAGTTCT GTTCCTCAAA TCTTTTTTTA AAGATACAAA ATTTCCAATG CATAAGCTGA TGTGGAACAG 000160 000161 AATGGAATTT CCCATCCAAC AAAAGAGGAA AGAATGTTTT AGGAACCAGA ATTCTCTGCT GCCAGTGTTT CTTCAACAAA 000240 000241 AATACCACGA GCATACAAGT CTGCCCAGTC CCAGGAAGAA AGAGGAGAGA CCCTGAATTC TGACCTTTTG ATGGTCAGGC 000320 000321 ATGATGGAAA GAAACTGCTG CTACAGCTTG GGAGATTTGC TATGGAAAGT CTGCCAGTCA ACTTTGCCCT TCTAACCACC 000400 000401 AGATCAATTT GTGGCTGATC ATCTGATGGG GCAGTTTCAA TCACCAAGCA TCGTTCTCTT TCCTGTTCTG GAATTTTGTT 000480 000481 TTGGAGCTCT TTCCCCTAGT GACCACCAGT TAGTTTCTGA GGGATGGAAC AAAAATGCAG CTTGCCCTTT CTATGTGGTG 000560 000561 CGTGTTCAGG CCTTGACAGA TTTTATCAAA AGGAAACTAT TTTATTTAAA TGGAGGCTGA GTGGTGAGTA GATGTGTCTT 000640 000641 GGTATGGAGG AAAAGGGCAT GCTGCATCTT CTTCCTGACC TCCGGGGTCT CTGGCCTTTT GTTTCCTTGC TCACTGAGGG 000720 000721 GTCTGTCTAA CCAAGCAGGC TAGATAGTGC TGGCACACAT TGCCTTCTTT CTCATTGGGT CCAGCAATGA AGATAAGTGT 000800 000801 TTGGGTTTTT TTTTTTTCCT CCACAATGTA GCAAATTCTC AGGAAATACA GTTTATATCT TCCTCCTATG CTCTTCCAGT 000880 000881 CACCAACTAC TTATGCGGCT ACTTTGTCCA GGGCACAAAA TGCCGTGGCA GTATCTAACT AAACCCCCAC AAAACTGCTT 000960 000961 AATAACAGTT TTGAATGTGA GAAATTTATG GTATCTCATT TGAACGGGGG AGCAGACTTG ATCTCAAATG AAGCTGTGCC 001040 001041 CAGGAGCCAG GCTTAGCATA TTGAGATTTT TATAGATACC TTAAAAAATA AAATATTTAA ACCTCTCTTT TCTTCCTTTT 001120 001121 TCTATGAAAT AGGTTTTTTC TCTAGTTTAC AAATGACATG AAAATAGGTT TTATTTGTGT TTTATCTGCT TTATTTTTTG 001200 001201 ATGCTTAGAC AACAGTTAGA CTTACTGAGC TCCTAAAAAA ACGAGGAAGA AGTCCTTATT TGTGAAAAGC ACTTTATGAG 001280 001281 TAATTGTATA GACAGTATGT GGCTGCGTCA CTGATCATCT TGTAAGGGTG TAACAGTCTT GTCTGTAAAG TGGCTGCAGT 001360 001361 GCCTTCTGTA GTGTGTTTTA TTTTTGGTAG GGAGAGGTGA AGCCTTCTGA AAAATTTGAG AGCAACTACA GAGGATTGTT 001440 001441 TGTAACTGTG TAGTATTCCT GATGGACTTT TTTCATCGTT AGAGTCAAGG ACCTAGACTT TTGCCACTGA AATAATATTG 001520 001521 ACCAAAAAAA TAGTTTATAA AAGGGATTTG TGAATAGAAA ATTCAGTGTG ATCATTTGTT GTTAATGTGC ACCTTAAAAG 001600 001601 AAGATTCTGT CTAGCTGTCA AATTCTGGTT CCCGAATATC TCACCCCTGA TTGTATTTGA GATCTAGTAG GGCATACTGG 001680 001681 GGCATTTTAG AAGATAAAAT CCCATACAAA TGATATATGC TATATTTATG TTGGTGTTGG AGAAGAAAGA GCAGTATATA 001760 001761 AAGAAATAAT TCAAGACTGC AGCACTGTCA ACCTGAAACT TTGTAAATAT TTCCTAGCTT CTGGTTTGGT GCGGTGACAG 001840 001841 CACTTTCATC ACAGGATGTT ACCTTGTATT CACCAGGCGG AGTGCGAGCT GCTGCACATC CTCCTCAGAT CTCACCTGTC 001920 001921 CCCACTGTAC ATCCACCCGC CAGCTGCTTG CAAACCTCAT CTCTAGCTTT AGTTCGAAAC CACATTGCAG GGTTCAGGTG 002000 002001 ACCTCTACAA AAAACTACCT CTTCAGAATG AGGTAATGAA TAGTTATTTA TTTTAAAATA TGAAAAGTCA GGAGCTCTAG 002080 002081 AACATGACGA TGATTTAAGA TTTTAACTTT TTTGTGTACT TGTATTTGAG CACTCTCATT TTGTCCTAAA GGGCATTATA 002160 002161 CATTTAAGCA GTAATACTGT AAAAAAATGT GTTGCTCGGA ATATCTGAAT GTTGTTGAAA GTGGTGCCAG AACCGGTTTA 002240 002241 GGGGTACGTT TCAGAATCTT AACCTTGAGT CAATTGCATG AAATTAAATA GCTGTGGTAT CACTTCACTA ACAGTGATGT 002320 002321 AATTTTAATT TTCAGTAGGC TTGGCATGAC AGTACATCCT CATAATGAGT TTGCTGCAGC TTTGTCACAT GCACAGGCAT 002400 002401 TCATAGAAAG ACCACCCAGC TAAGAGGGTA GAATGATTAC TCTTTTTGCA AGATTCTCTT CTTTGTCCAA GTTGGCATTG 002480 002481 TTAGTGCTAG GAATACCAGC ACCTTGAGAC GAGCAGATTC CAACCATTAG GCTATAAACA CCATAGCCAG AGATGGAAGG 002560 002561 TTTACTGTGA GTATGAACAG CAAATAGCTT ACAGGTCATG AGTTGAAATG GTGTAGGTGA GGCTCTAGAA AAATACCTTG 002640 002641 ACAATTTGCC AAATGATCTT ACTGTGCCTT CATGATGCAA TAAAAAAGCT AACATTTTAG CAGAAATCAG TGATTTGTGA 002720 002721 AGAGAGCAGC CACTCTGGTT TAACTCAGCT GTGTTAATAA TTTTTAGAGT GCAATTTAGA CTGCATAGGT AAATGCACTA 002800 002801 AAGAGTTTAT AGCCAAAATC ACATTATTAA GGTAACAGTG CTTTAAAAAA AAAAAATGCA TGGGGCAATT AGTCGGCAAC 002880 002881 TCAATGAGTG ACTAAAGTAC TTTTATTTAA CATCCACAAC TTCAACTGTT AAGTTTTATT AATTACTAAA TCAGCTTTAT 002960 002961 TAAAATGTTG ACATTTATTT AGCTATTTTG AATAATTATA GTGACTTGAC GAGTGTGTAT GAGGACACAG CCAATGTAAG 003040 003041 CCAGTGTATC CATTTTTTAG AGGTGCATTT TTTTTTAAAG AATTCTGTAG ATAGAAGTGC TCTGAAAACA ACTAAAATAT 003120 003121 GTTTATTCAT GGTAGTATCA AAAAATGTTT GTACAAACCA TCTGCTTCTC CCGGCCAGCC GAGTTCATTC TCCAGCACCG 003200 003201 TGACCGCTGG TTCTCATGTA CAGCACATAT GCGGGAGAGT TGGCAGAAAA TTTGTGAAGA GATGCCGCAA AGGAAGGGTC 003280 003281 TGTTGACGGG TGGGATTGGG GGTTTTGATG AAGTTGCTTA GTCCTGGTTT TGTTTTGAAA ATTACTGCGT TGCATTTTTG 003360 003361 TGTTAAGTTT TTGAACCCAC GTGTGTTTTG GTGGAGTATG AGTTGGAAGT CACTGCAAAC TAGCATAAAC AACAAAGCTC 003440 003441 ACAGAGTAGG CACAGATGTA GAGAACAGAG ACCAAAATGG GGTGAGGTGG CAGTAAATCT AGGATAGGGA AAAATTAATG 003520 003521 TGAGGGTGGG AAATAAACTG TAATTACCTG AAATCAAATG TAAGAGTGCA ATAAGTATGC TTTTTATTCT AAGCTGTGAA 003600 003601 CGGTTTTTTT AAGAATCATT CCTTCCTAAT ACATTTGTGT ATGTTCCATA GCTGATTAAA ACCAGCTATA TCAACATATA 003680 003681 ATGCCTTTTT ATTCATGTTA ATGACCAACG TAAGTGGCTA GCCTTTATGT CTTATTTATC TTCATGTTAT GTTAGTTTAC 003760 003761 ATACAGGGGT GTATGTCTCT GTGCTGTCCC CTTCTCCTGC CTTCATTTTA AAATGCATCC ATGGGTCCTC CGTGTTTCCT 003840 003841 TTGGCCATGC CACATATATA GACTCAGTTT GGCCTTCATG ATATCGCCTG ATTTTTGAGG ACTGTATCAC AGTGATATGT 003920 003921 ATTTGTGGTA ATCTCATTTG TTGGTTGTAC ATCTGATCCT TTCCTCAACA TGGCAATTGC TGCCTTTCCT AAGATAGGAT 004000 004001 CATACAACTG ATCAGGGGAT TGAATTTGAT CATTCATCAA CATGTGTCTC TGAATTTTAT TCAGTAGTTG TCATTGCTCT 004080 004081 TTGGTTTAGA CCAAGAAAAA GGAAATCCCC CCTTTTCATG TATTCCTTGG TTTGAGGACA TGACTCCTGT AAGGGAGAGG 004160 004161 AAAGGGAGAT GCTTCCTGTT TGAACTGCAG TGAATTCACG GTTCCTGTTT CACCACTCCA AACCTTATGG CGACTCACAC 004240 004241 ACACATTCCT CTTTTCTGTT ACTGCCAAAG GTTCGGGTTT AGTACACTTC AGTTCCACTC AAGCATTGAA AAGGTTCTCG 004320 004321 TGGAGTCTGG GGCGTGCCCA GTGAAAAGAT GGGGACTTT |
Predicted Small Protein
Name | NONHSAT123693_smProtein_425:619 |
Length | 65 |
Molecular weight | 7183.2487 |
Aromaticity | 0.15625 |
Instability index | 73.126875 |
Isoelectric point | 7.80450439453 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.0462462462463 |
Amino acid sequence | MGQFQSPSIVLFPVLEFCFGALSPSDHQLVSEGWNKNAACPFYVVRVQALTDFIKRKLFY LNGG |
Secondary structure | LLLLLLLLEEEELHHHHHLLLLLLLLLLEELLLLLLLLLLLEEEEEEHHHHHHHHHHHHH HLLL |
PRMN | - |
PiMo | - |