NONHSAT124614
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT124614 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
7219 nt |
Genomic location |
chr8-:563151..594400 |
Exon number |
10 |
Exons |
563151..563981,565479..566370,566433..566581,575675..576234,576983..577238,582467..583806,589363..589439,590163..590860,590950..591429,592460..594400 |
Genome context |
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Sequence |
000001 TTGCTTGACT TTGACAATTT TTCAGCGTCA CAAGCAAGAA ACCACCACCT GTGGGCCCCA GTGAGAGACT GAACTTACAA 000080
000081 AGAGACGATG ACCACAGCAT ATGGAAAGGA AGAAGGAGCC ACCCTCTGCA GGAGCCCTGA AGCCCGAAGA GCAGGAGGCC 000160 000161 AGGCACTCGC CTTAGGACGG GGCCAGGAGG CCAGGCGCTT GCCTTAGGAT GGGGCCAGGA GGCCAGGCAC TTGCCTTAGG 000240 000241 ACGGGGCCAG GAGGCCACAC AGTGATCCCT GTAGCAGTGG CCCCATGCGG CCAAGACTTA AGATAGCAGA CACCTTCCCC 000320 000321 GATTTGTGTC TCTACTTAAA ATGTAAGATC AGCTGGAGAA AGCCCAGTGT GCGCCCCCAC CAAGCCCACA GGACTCCTGC 000400 000401 TCCTGCAGAG CCGCCCCCGC CCCGTCAGGC CCACCGTGCT GGTGCTCAGG GGGCTGCATC CTGCTGGGAG CACGATTCCG 000480 000481 GGTGTTTCTC CAGGCGCTGA GTCCGTGCCT CCTTTTTCGG TCACACATCT TATCATTTGA GTTTAGCATC TACTTATAAA 000560 000561 CATCATTTTC AAATCTGAAT CCTGCTTCCT CACTACAATA AAAAGGAGAG ACAAAAGGAA GTTGCGCCCA ACCTTCCAGA 000640 000641 AGCCCTGAGG AGCCGCCCCA TGCCTGACGC CACATCCCAC AAGCTCCCGA AGTCGCGGAT GGCTCAGTGA CATTCCAGAT 000720 000721 GCTGTCCCAT CGCTCAGAGT CCCGAGACAC AGACATGAAC ACCAAGTCCA TCCTTTGAGG AAGGCAGACT TGGCGGGAAT 000800 000801 GTGGTTTTCT TCAAAGGTGA GGGGGTAGGG GGAGCTGCCA GGGCCCAGCC GGCAGGGGCA GGAGGGGCGG GGCTTCGGCC 000880 000881 CAGGGCCCTG CACGGGGGTG ACCATCAGTG CCCCCCATCA CCGTGACAGT CCTATCCCCA GTCTGCAAAA TGCCCCCTGG 000960 000961 ATGGAGCATC CCATGAGAGC CGGGCCATGG AGAGGCTGGA ATGTGCCAGA CTCTGAGGCA CCCAGGGGGT CAGCCTTTCC 001040 001041 CTCTGGTTGG TCCCCCTGTG CCACACCGCA GCCTGCGCCT GGCCAGCTTC CCGTCCCTGC GAGCACAGCC TGCGCCTGGC 001120 001121 CAGCTTCCCG TCCCTGCTGC GACCCCATTA CTAGGTCATC GTCTCATGCC AGAGAACTCG CAGGAATCGC ATGCAATGTT 001200 001201 TAACGAGAGG CAGAATGTGG GCACCAGGTG TGAAGCAGTC CCCGGCTGTG GACGGGAGAC TCCAGGCTGC GCCAGGCAGG 001280 001281 GCGCCTTCCC CTGGACCTTG AAGGGCACCC GATGTCCTGG GGCCGTGAGG GGCGGGGTGC TTATCCATGT GACAGGACTC 001360 001361 TTCCAGTAGC AACAGGGAGG GCCCAGCAAA ACCCGCAGTT TGTTTCGGGC CACGTTCCAA CAAGTGACTC GGCGGCGTCT 001440 001441 CCCACCTGCA CACTCAGTCA GGAGGCTGCA GTCTCCCGTC CAGCCCCACA GCCTGAGGGA TTCCTGTTGG TTACCCAGAA 001520 001521 CTGCCTGCCA CAGGTGCCAG GGCAAGAGAT GTCACTCAAT TTTCCAGCCC CCAGTCCTGT AGACATCCTG GGTGTGCGGC 001600 001601 ACACATCGGC TCACTCACAC TGACCCTCTG AGCCGGTGAG AACTCCACAA GAAGAGGGCC AGCGCCTCAC AAGATCAAGG 001680 001681 CGGAACAACG CGTTTGTGGG ATGATGAAGA CCTCATAACA GACGTGCCAG TGGGTTGATT ACTGTGAAAT TCTCAACTGT 001760 001761 GGTTTCTGTA ACTTAAAAAA AAAAATTTCC ACTTTGGGAG GCCGAGGCGG GCAGATCACG AGGTCAGAAG ATCGAGACCA 001840 001841 TCCTGGCTAA CACAGTGAAA CCCCGTCTCT ACTAAAATAC AAAAAATTAG CCGGGCGTGG TGGCTGGTGC CTGTAGTCCC 001920 001921 AGCTATCTGG GAGGCTGACT TAAGGGGACT TGGGGATTTC TTTTTCTCTT TTAATTTTTA ATTTTGAAAA TGAGGCCCTG 002000 002001 TAAACACTGC TTATATTTGG CCACTAAGTG GCCTCCTAAA TGGCTGATTT CTTTTTAAAG TATGAAGATT GTTTGCTGTG 002080 002081 GCATTATTAA TTACACACAG ATTTGTACCA CTTTCCTCCA CTAGAATTAA GGAAATTTGT AAAACCAACT CGTGGTCAGA 002160 002161 CTCCAGCAAA TGACCCATCG TTTTCCACCA GTGTCTCTGT TTCTATGTAA AATTATAGAT TAAACGCCAA GTCCTCTGCC 002240 002241 TCCACCTGTC CAGGGTAAGT AACCACCTCC AGAAGTGAGA AGCTGGGAGT GGCTCTGAGA GGGGCTGACT CAAGTATTCT 002320 002321 CCTAATAAAT AGGGGCGGGC GAAGCATCAG GGCGAATCCC ACGTGAGGCA GAAAAGTGAG CTGAACTATC CTGGAGTGTT 002400 002401 TTGTTGCATT CCATATCTTA TTTTCAATTG TCTGGTGTTT CCAGCTTTTA TTGGCTCTTG TCGAAATCAA ATTGGAAGAT 002480 002481 CTTCAGTCCC AGCTGCACCC AACGTGGAAA AGTATTCCAG GTCCATCCCC AAGGAACCAA CACCGATGAC ATGGACTCAG 002560 002561 GAATCTTATA ACCTACGTGG ACTCTTTCCA TCCGTACATT GTCGTGCACA TGCCACTCAT CACCTGGCGT GCCCAGATCC 002640 002641 TCGCAGGGCA ACACCCTGTG ATAATTCCAG GTGATTCTCT ACATCTGCAG CTTGAGGTTA GCCTCATATC ACATTACATT 002720 002721 CTCACTAGAA ACAAAACAAA AATGAAATAC TTAAAACATC TACCAGAACA GAATTAGGAC TGGAAAGCAG CGGTCTTAGC 002800 002801 TGACAAACAA GTTGTGCCAT CTGAGACTCA TGGGAGTAAA TCTCCTCTTT CATAGTAAAA TCTCATTACA GAATGTTCCT 002880 002881 TGACTTTGGC AATTTTTCTG GGTCACAAGC AAGAAAAAAA CATAAGCAGG CGGAGAGAGC TCGCCCTGCC ACCTGGGGCT 002960 002961 TGTGTGTCAG CAGCTCCAGA GAGGAATTGG GATGTGAAAA GTTCAGCCAA AATAGAAAGA ATTAACATTT TTGCTATAAA 003040 003041 AAAGGAGCAT CTGCTGCCTT TTCATGAGGA CCTTCTCCAT AGGGGTCCTT TGATTAGGCG GCATTCCACT CAGTTTAAAG 003120 003121 TGCTTTTCAA ATCATCTCCT CATTATTTCT CTATCACTTC TTCTAGGAAG ATATTTCATC CTGATGGTAT ACTGGAAGCG 003200 003201 GCTGTCTTTT CCCATTGAGG AGTCCTGCCA TCCTGGCACC TGTGCCAAAG CCCATTCGAC CTTGAGTTTG AGGGTTTATT 003280 003281 TCTGGGTCCT CGCCTCTGTT CCCTTGGTCC ATACACCACC TTTATATCAG GACGGTGATG CTTTCATTCC TGTGGCTTGG 003360 003361 CAGTAAAATT TTGAATCAGG AAATGTGAGT CTCCAGCTTC GTTCTTTTTA GGATTGTTTT GGGTAATCAG GAACCCTTGA 003440 003441 GATTCCATGT GAATTTAGGG TGGGTTTTTC TGTTTCTCTG AGAAATATCC TTGAGATTCT CCCAGGAAGA TATATTGTTT 003520 003521 TGAGGGCTTT AAAACTCCCT ATAAATATTG CTGTACTTTG GGGGCCCTTT TCTTCCCACA CTGTGTTTTT GAGATTTACC 003600 003601 CATGCTGTTG TGAGTACCTC GCTGAATGCA GCACATACTG CATCATACAA GTGCATCCTG ATCCATTTCC CCTGACGGAC 003680 003681 GTGTTCATTT TTTGTTATGG CAATGCTGCA ATACACGTTT TTAGCTGTGC CTCTTTGTGC TTGAATGTGA GGGGTTTTCT 003760 003761 AAGGTGTGAA CCTCAGAACA GAGTCGCCAG GCCATAGGGT GTGCACAGCC TCCGTCTGTC CTGGGCGGCC CCACGCGGGC 003840 003841 TCCACACTGG TTTCCGTCTG TCCTGGGCAG CACCACGGTG GCTCCACACT GGTTTCCACA CTGGTTTCCG TCTGTCCTGG 003920 003921 GCGGCCCCGC GCGGGCCCCA CACTGGTTGT GCGTTTCTCA GGCCACCAGC AGCGTCCAAG AGCTCTGGCC GATCTGCCTC 004000 004001 CCTCCCTGCG TCTCGGCATC TTTGTCTGGC ACTGCTGATG GTTTTGCCTA AACGGCTCTT TGCTGTGGGG CATCCTGTGC 004080 004081 ACCGTGGGAC GTCTTGTGCA CTGTGGGGTG TTGAGCCGCA TCCGTGGTCT CCACCCACAG ATGACAACGA CACCCCCAGC 004160 004161 TATGAAACCA GAAATGACTC CACACATTGC CAAATGTCCC CCAGGGCAAA GTCACCCACT TGGGCGTTAT GTTACCCACT 004240 004241 GATGATCTGA ATTTTTGTCC ATTTCACCTG TCTGAGTTTG TGTGTCTCTG AGCACTGGTG GGACTGAGCG TGTCCGTGGC 004320 004321 TTGTGGCCAC TCCTGCTTCC TGTTTGTGAA TTTTATGTTC ATAACGTCTG CCCCTTTCTT TGGGTTTTTC ACTTTATTCT 004400 004401 TATTATTTTG TAAATTCCTT AAGTATTCTG GATACTTACC TTTTGTTATT CTATTCTAGT AGTCACTGTC CCCAAAACAA 004480 004481 TGTTCATAAA TTTGTTCTTA TAAAGATGAG AAATAAAAAA CATTGAATTT TAGTGGGAAG TCTGAAGCTC AGAGAGCCTG 004560 004561 GGCCAATGGT ACAGGTCACA CAGCACATCA GTGGCTACAT GTGAGCTCAG ACCTGGGTCT GCTGCTGTCT GTCTTCCCAA 004640 004641 TATCCATGAC CTTGACTGAT GCAGGTGTCT AGGGATACGT CCATCCCCGT CCTGCTGGAG CCCAGAGCAC GGAAGCCTGG 004720 004721 CCCTCCGAGG AGACAGAAGG GAGTGTCGGA CACCATGACG AGAGCTTGGT GAGTACCAGG CCAAGCTGCT AACTCCCAGC 004800 004801 AATTTGTATG TCAGACTCTA CAGACAATTC TGTGCTGTCT ATTTTTGCTC ATCTTTAAAA CAGCCACGAA ATATGCAGCT 004880 004881 TCCTTTCCCT GAGAAAATGG CAAAGAAAAT TCAACACAGA AGGCCAGGGA GGGTGTGTGG AAACGATTCA CATGTTCAAA 004960 004961 AGATTTATAT GTGTAGAAGA AAGCTGTGAA GTGTGAAGTA TATTTTCTAT TGTAGAATGG ATGAAAATGG AATAAAAATA 005040 005041 ATATCCTTTG CTAGGCAGAA TAAATAACTT CTTTAAACAA TTTTACGGCA TGAAGAAATC TGGACCAGTT TATTAAATGG 005120 005121 GATTTCTGCC ACAAACCTTG GAAGAATCAC ATCATCTTAG CCCAAGGTGA AAACTGTGTT GCGTAACAAA GAACATGACT 005200 005201 GCGCTCCACA CATACATCAT TGCCCGGCGA GGCGGGACAC AAGTCAACGA CGGAACACTT GAGACAGGCC TACAACTGTG 005280 005281 CACGGTTCAG AAGCAGGTTT AAGCCATACT TGCTGCAGTG AGACTACATT TCTGTCTAAA GAAGATGTCC CTGACTTGAT 005360 005361 CTGTTTTTCA GCTCCAGTTC CCAGATGTGC GTGTTGTGGT CCCCAGGTAT CAACTCCAAA TTCCTGGGAG CAGTGCTCTG 005440 005441 GCCGTACCTG TCTGGGTTTG TTGGCCAGCG CTGAATCCGC TTAGCCAGGA GAGCATGCCC ACACCTGGCC GACAGGAGCC 005520 005521 TGTCTTCAGC AACTTTCAGT TAACGCGTCC CTCTTGCCCC ATGCTTGTCC TGCCACACAA ATGTGAAAAT GCAACGTTAC 005600 005601 AAAGATCTGT GCCTCAGACA CCATTTGAAC ACAGAGAAAC TCGTGGGCTT ATGTGACTAC ACTTTTCAGG TTACGGAATT 005680 005681 TCTTTAAGGT GTACCCTTGA GTTTAATATA CTTATTAATA ACTTATCATT ACAGAGAAAA AATTACCAGA AGTACAGGGT 005760 005761 GTTTTTAACG GACTTTCTTC TCTTGCACAT TGCTGGGCAT GGCGTGTACT GTGACAGGGC GGAGTGATGG GCTGAGAATG 005840 005841 TGTGTGTGTC TCCAACAGTT CCCAAACGTC TACATTTTCA AGAAAAAGGC AATCTACATC ATCTGGAAAA TTGTAACTTA 005920 005921 GTAATTAATT AGGATAATTT CCCTAGGTTC TCTGTGCTGC ATGAGACCAC AGCGTATTCA TTAAAGAGGA AAGCTGAATA 006000 006001 TTGGCGGAAA ACAGGGTTGT AAATTTGTAA CAAGTTTTTC TATCAGAAAA TGAAATGCAA TTTTCTGTCC TCTCTGAGCT 006080 006081 TTTACCACAT AGCTCTTAGC AATGGGTGTT TTTTCTGTCA TTCCACTCAA TTCTCACTCG AGTAAACCTC CAAGCAATAA 006160 006161 GAATGTTGTC TTTCCTGTTT AGACTAGACT GACTACCTTT CCAGGACAGT CCATTAAGTT GATTTCCAAT GGTGAAGGGT 006240 006241 CAGACACGCC TCCCCTGGGC AGATCAGGGA TAGTTCATAG CATTTGCCAA ATAGCTGTCT GCAGCTGCAG CCATCACCTC 006320 006321 CGTAATCAAC ACTGCCATTG TCTGAGCCTT CCCTTTGCAG GAATGGTGTC AGTGCACCCA GGCCTCGTAA GGGAGGCGGC 006400 006401 CCTTGCTACA GCTGCACCTG CCTCCTCCAT CACCACCTGC CTCCTCCATC ACCACCTGCC TGTCACCTGG GAGTCAGGCC 006480 006481 CGCTGCCCTG GAGGTGGGGT CAAACCAGTG CCAAAGTCAC CCAGGAGCCA GCCAGGGCCT GGGAGTTCTC CCTCATGACA 006560 006561 CGCCGGCAGC AGGTGAACAT TCTAAGGCTG ACACTTCTGG GCATTCGCTG AGATCTTGGG AAAGAACTAG CCCCCCGGCC 006640 006641 CTGCTTTCAC TTAGAGATGG GAACAACGAT TGCCCTGAGT TCCTGGGAGC TACAGGAGAA ATATGCGCCC TGAGTTCCTG 006720 006721 GGAGTTACAG GAGAAATATG CACGGTGTGC TTGGCCTGTG GCACCAGAGC TTTAGGGCAC TGGTCTTTCA TCGCTGGCCA 006800 006801 TGAAACAGCA AGGCTTTGAA AGGAAGGTAG ATGGAGTGTG CAAACCTTGT GGGAATCTTT GCTTCTTGGC AAAAGAATGA 006880 006881 ATAAGTGAAT TTGGTCATGG AGAAAATTGC ATGCTAGGGG CATGTTTGTA ACTACCGTCT GTGTTTGTAG TAAAGCACTC 006960 006961 GATAAGTATT TGCCAAAAGA ATGACCAATA AATCAATACA GCTCTTAAAT TTTTCAAGCC AATTTGACTT TATGCAACTT 007040 007041 TTGAAGCTCT TTCACAGATA ATGAAACAAA GGCACAAAGA AATTAAGTCA TACAGGGCCT TGGAGAGCTT ATTGAGCAAA 007120 007121 TATTTTGTGT TTTATTTATC AGTTCTGACT AGGATTTTAT AATTTACTCC TATAACTTCC ATATATTTTC CTTTTCTAAT 007200 007201 GTATTTTCTA GATTGAGTC |
Predicted Small Protein
Name | NONHSAT124614_smProtein_6362:6610 |
Length | 83 |
Molecular weight | 9149.5533 |
Aromaticity | 0.0609756097561 |
Instability index | 54.3073170732 |
Isoelectric point | 11.2509155273 |
Runs | 13 |
Runs residual | 0.0226348854398 |
Runs probability | 0.0332096802685 |
Amino acid sequence | MVSVHPGLVREAALATAAPASSITTCLLHHHLPVTWESGPLPWRWGQTSAKVTQEPARAW EFSLMTRRQQVNILRLTLLGIR |
Secondary structure | LEELLHHHHHHHHHHHHLLLLLHHHHHHHLLLLEEELLLLLLLLLLLLLHHHLLLHHHHH HHHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |