NONHSAT124614

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT124614

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

7219 nt

Genomic location

chr8-:563151..594400

Exon number

10

Exons

563151..563981,565479..566370,566433..566581,575675..576234,576983..577238,582467..583806,589363..589439,590163..590860,590950..591429,592460..594400

Genome context

Sequence
000001 TTGCTTGACT TTGACAATTT TTCAGCGTCA CAAGCAAGAA ACCACCACCT GTGGGCCCCA GTGAGAGACT GAACTTACAA 000080
000081 AGAGACGATG ACCACAGCAT ATGGAAAGGA AGAAGGAGCC ACCCTCTGCA GGAGCCCTGA AGCCCGAAGA GCAGGAGGCC 000160
000161 AGGCACTCGC CTTAGGACGG GGCCAGGAGG CCAGGCGCTT GCCTTAGGAT GGGGCCAGGA GGCCAGGCAC TTGCCTTAGG 000240
000241 ACGGGGCCAG GAGGCCACAC AGTGATCCCT GTAGCAGTGG CCCCATGCGG CCAAGACTTA AGATAGCAGA CACCTTCCCC 000320
000321 GATTTGTGTC TCTACTTAAA ATGTAAGATC AGCTGGAGAA AGCCCAGTGT GCGCCCCCAC CAAGCCCACA GGACTCCTGC 000400
000401 TCCTGCAGAG CCGCCCCCGC CCCGTCAGGC CCACCGTGCT GGTGCTCAGG GGGCTGCATC CTGCTGGGAG CACGATTCCG 000480
000481 GGTGTTTCTC CAGGCGCTGA GTCCGTGCCT CCTTTTTCGG TCACACATCT TATCATTTGA GTTTAGCATC TACTTATAAA 000560
000561 CATCATTTTC AAATCTGAAT CCTGCTTCCT CACTACAATA AAAAGGAGAG ACAAAAGGAA GTTGCGCCCA ACCTTCCAGA 000640
000641 AGCCCTGAGG AGCCGCCCCA TGCCTGACGC CACATCCCAC AAGCTCCCGA AGTCGCGGAT GGCTCAGTGA CATTCCAGAT 000720
000721 GCTGTCCCAT CGCTCAGAGT CCCGAGACAC AGACATGAAC ACCAAGTCCA TCCTTTGAGG AAGGCAGACT TGGCGGGAAT 000800
000801 GTGGTTTTCT TCAAAGGTGA GGGGGTAGGG GGAGCTGCCA GGGCCCAGCC GGCAGGGGCA GGAGGGGCGG GGCTTCGGCC 000880
000881 CAGGGCCCTG CACGGGGGTG ACCATCAGTG CCCCCCATCA CCGTGACAGT CCTATCCCCA GTCTGCAAAA TGCCCCCTGG 000960
000961 ATGGAGCATC CCATGAGAGC CGGGCCATGG AGAGGCTGGA ATGTGCCAGA CTCTGAGGCA CCCAGGGGGT CAGCCTTTCC 001040
001041 CTCTGGTTGG TCCCCCTGTG CCACACCGCA GCCTGCGCCT GGCCAGCTTC CCGTCCCTGC GAGCACAGCC TGCGCCTGGC 001120
001121 CAGCTTCCCG TCCCTGCTGC GACCCCATTA CTAGGTCATC GTCTCATGCC AGAGAACTCG CAGGAATCGC ATGCAATGTT 001200
001201 TAACGAGAGG CAGAATGTGG GCACCAGGTG TGAAGCAGTC CCCGGCTGTG GACGGGAGAC TCCAGGCTGC GCCAGGCAGG 001280
001281 GCGCCTTCCC CTGGACCTTG AAGGGCACCC GATGTCCTGG GGCCGTGAGG GGCGGGGTGC TTATCCATGT GACAGGACTC 001360
001361 TTCCAGTAGC AACAGGGAGG GCCCAGCAAA ACCCGCAGTT TGTTTCGGGC CACGTTCCAA CAAGTGACTC GGCGGCGTCT 001440
001441 CCCACCTGCA CACTCAGTCA GGAGGCTGCA GTCTCCCGTC CAGCCCCACA GCCTGAGGGA TTCCTGTTGG TTACCCAGAA 001520
001521 CTGCCTGCCA CAGGTGCCAG GGCAAGAGAT GTCACTCAAT TTTCCAGCCC CCAGTCCTGT AGACATCCTG GGTGTGCGGC 001600
001601 ACACATCGGC TCACTCACAC TGACCCTCTG AGCCGGTGAG AACTCCACAA GAAGAGGGCC AGCGCCTCAC AAGATCAAGG 001680
001681 CGGAACAACG CGTTTGTGGG ATGATGAAGA CCTCATAACA GACGTGCCAG TGGGTTGATT ACTGTGAAAT TCTCAACTGT 001760
001761 GGTTTCTGTA ACTTAAAAAA AAAAATTTCC ACTTTGGGAG GCCGAGGCGG GCAGATCACG AGGTCAGAAG ATCGAGACCA 001840
001841 TCCTGGCTAA CACAGTGAAA CCCCGTCTCT ACTAAAATAC AAAAAATTAG CCGGGCGTGG TGGCTGGTGC CTGTAGTCCC 001920
001921 AGCTATCTGG GAGGCTGACT TAAGGGGACT TGGGGATTTC TTTTTCTCTT TTAATTTTTA ATTTTGAAAA TGAGGCCCTG 002000
002001 TAAACACTGC TTATATTTGG CCACTAAGTG GCCTCCTAAA TGGCTGATTT CTTTTTAAAG TATGAAGATT GTTTGCTGTG 002080
002081 GCATTATTAA TTACACACAG ATTTGTACCA CTTTCCTCCA CTAGAATTAA GGAAATTTGT AAAACCAACT CGTGGTCAGA 002160
002161 CTCCAGCAAA TGACCCATCG TTTTCCACCA GTGTCTCTGT TTCTATGTAA AATTATAGAT TAAACGCCAA GTCCTCTGCC 002240
002241 TCCACCTGTC CAGGGTAAGT AACCACCTCC AGAAGTGAGA AGCTGGGAGT GGCTCTGAGA GGGGCTGACT CAAGTATTCT 002320
002321 CCTAATAAAT AGGGGCGGGC GAAGCATCAG GGCGAATCCC ACGTGAGGCA GAAAAGTGAG CTGAACTATC CTGGAGTGTT 002400
002401 TTGTTGCATT CCATATCTTA TTTTCAATTG TCTGGTGTTT CCAGCTTTTA TTGGCTCTTG TCGAAATCAA ATTGGAAGAT 002480
002481 CTTCAGTCCC AGCTGCACCC AACGTGGAAA AGTATTCCAG GTCCATCCCC AAGGAACCAA CACCGATGAC ATGGACTCAG 002560
002561 GAATCTTATA ACCTACGTGG ACTCTTTCCA TCCGTACATT GTCGTGCACA TGCCACTCAT CACCTGGCGT GCCCAGATCC 002640
002641 TCGCAGGGCA ACACCCTGTG ATAATTCCAG GTGATTCTCT ACATCTGCAG CTTGAGGTTA GCCTCATATC ACATTACATT 002720
002721 CTCACTAGAA ACAAAACAAA AATGAAATAC TTAAAACATC TACCAGAACA GAATTAGGAC TGGAAAGCAG CGGTCTTAGC 002800
002801 TGACAAACAA GTTGTGCCAT CTGAGACTCA TGGGAGTAAA TCTCCTCTTT CATAGTAAAA TCTCATTACA GAATGTTCCT 002880
002881 TGACTTTGGC AATTTTTCTG GGTCACAAGC AAGAAAAAAA CATAAGCAGG CGGAGAGAGC TCGCCCTGCC ACCTGGGGCT 002960
002961 TGTGTGTCAG CAGCTCCAGA GAGGAATTGG GATGTGAAAA GTTCAGCCAA AATAGAAAGA ATTAACATTT TTGCTATAAA 003040
003041 AAAGGAGCAT CTGCTGCCTT TTCATGAGGA CCTTCTCCAT AGGGGTCCTT TGATTAGGCG GCATTCCACT CAGTTTAAAG 003120
003121 TGCTTTTCAA ATCATCTCCT CATTATTTCT CTATCACTTC TTCTAGGAAG ATATTTCATC CTGATGGTAT ACTGGAAGCG 003200
003201 GCTGTCTTTT CCCATTGAGG AGTCCTGCCA TCCTGGCACC TGTGCCAAAG CCCATTCGAC CTTGAGTTTG AGGGTTTATT 003280
003281 TCTGGGTCCT CGCCTCTGTT CCCTTGGTCC ATACACCACC TTTATATCAG GACGGTGATG CTTTCATTCC TGTGGCTTGG 003360
003361 CAGTAAAATT TTGAATCAGG AAATGTGAGT CTCCAGCTTC GTTCTTTTTA GGATTGTTTT GGGTAATCAG GAACCCTTGA 003440
003441 GATTCCATGT GAATTTAGGG TGGGTTTTTC TGTTTCTCTG AGAAATATCC TTGAGATTCT CCCAGGAAGA TATATTGTTT 003520
003521 TGAGGGCTTT AAAACTCCCT ATAAATATTG CTGTACTTTG GGGGCCCTTT TCTTCCCACA CTGTGTTTTT GAGATTTACC 003600
003601 CATGCTGTTG TGAGTACCTC GCTGAATGCA GCACATACTG CATCATACAA GTGCATCCTG ATCCATTTCC CCTGACGGAC 003680
003681 GTGTTCATTT TTTGTTATGG CAATGCTGCA ATACACGTTT TTAGCTGTGC CTCTTTGTGC TTGAATGTGA GGGGTTTTCT 003760
003761 AAGGTGTGAA CCTCAGAACA GAGTCGCCAG GCCATAGGGT GTGCACAGCC TCCGTCTGTC CTGGGCGGCC CCACGCGGGC 003840
003841 TCCACACTGG TTTCCGTCTG TCCTGGGCAG CACCACGGTG GCTCCACACT GGTTTCCACA CTGGTTTCCG TCTGTCCTGG 003920
003921 GCGGCCCCGC GCGGGCCCCA CACTGGTTGT GCGTTTCTCA GGCCACCAGC AGCGTCCAAG AGCTCTGGCC GATCTGCCTC 004000
004001 CCTCCCTGCG TCTCGGCATC TTTGTCTGGC ACTGCTGATG GTTTTGCCTA AACGGCTCTT TGCTGTGGGG CATCCTGTGC 004080
004081 ACCGTGGGAC GTCTTGTGCA CTGTGGGGTG TTGAGCCGCA TCCGTGGTCT CCACCCACAG ATGACAACGA CACCCCCAGC 004160
004161 TATGAAACCA GAAATGACTC CACACATTGC CAAATGTCCC CCAGGGCAAA GTCACCCACT TGGGCGTTAT GTTACCCACT 004240
004241 GATGATCTGA ATTTTTGTCC ATTTCACCTG TCTGAGTTTG TGTGTCTCTG AGCACTGGTG GGACTGAGCG TGTCCGTGGC 004320
004321 TTGTGGCCAC TCCTGCTTCC TGTTTGTGAA TTTTATGTTC ATAACGTCTG CCCCTTTCTT TGGGTTTTTC ACTTTATTCT 004400
004401 TATTATTTTG TAAATTCCTT AAGTATTCTG GATACTTACC TTTTGTTATT CTATTCTAGT AGTCACTGTC CCCAAAACAA 004480
004481 TGTTCATAAA TTTGTTCTTA TAAAGATGAG AAATAAAAAA CATTGAATTT TAGTGGGAAG TCTGAAGCTC AGAGAGCCTG 004560
004561 GGCCAATGGT ACAGGTCACA CAGCACATCA GTGGCTACAT GTGAGCTCAG ACCTGGGTCT GCTGCTGTCT GTCTTCCCAA 004640
004641 TATCCATGAC CTTGACTGAT GCAGGTGTCT AGGGATACGT CCATCCCCGT CCTGCTGGAG CCCAGAGCAC GGAAGCCTGG 004720
004721 CCCTCCGAGG AGACAGAAGG GAGTGTCGGA CACCATGACG AGAGCTTGGT GAGTACCAGG CCAAGCTGCT AACTCCCAGC 004800
004801 AATTTGTATG TCAGACTCTA CAGACAATTC TGTGCTGTCT ATTTTTGCTC ATCTTTAAAA CAGCCACGAA ATATGCAGCT 004880
004881 TCCTTTCCCT GAGAAAATGG CAAAGAAAAT TCAACACAGA AGGCCAGGGA GGGTGTGTGG AAACGATTCA CATGTTCAAA 004960
004961 AGATTTATAT GTGTAGAAGA AAGCTGTGAA GTGTGAAGTA TATTTTCTAT TGTAGAATGG ATGAAAATGG AATAAAAATA 005040
005041 ATATCCTTTG CTAGGCAGAA TAAATAACTT CTTTAAACAA TTTTACGGCA TGAAGAAATC TGGACCAGTT TATTAAATGG 005120
005121 GATTTCTGCC ACAAACCTTG GAAGAATCAC ATCATCTTAG CCCAAGGTGA AAACTGTGTT GCGTAACAAA GAACATGACT 005200
005201 GCGCTCCACA CATACATCAT TGCCCGGCGA GGCGGGACAC AAGTCAACGA CGGAACACTT GAGACAGGCC TACAACTGTG 005280
005281 CACGGTTCAG AAGCAGGTTT AAGCCATACT TGCTGCAGTG AGACTACATT TCTGTCTAAA GAAGATGTCC CTGACTTGAT 005360
005361 CTGTTTTTCA GCTCCAGTTC CCAGATGTGC GTGTTGTGGT CCCCAGGTAT CAACTCCAAA TTCCTGGGAG CAGTGCTCTG 005440
005441 GCCGTACCTG TCTGGGTTTG TTGGCCAGCG CTGAATCCGC TTAGCCAGGA GAGCATGCCC ACACCTGGCC GACAGGAGCC 005520
005521 TGTCTTCAGC AACTTTCAGT TAACGCGTCC CTCTTGCCCC ATGCTTGTCC TGCCACACAA ATGTGAAAAT GCAACGTTAC 005600
005601 AAAGATCTGT GCCTCAGACA CCATTTGAAC ACAGAGAAAC TCGTGGGCTT ATGTGACTAC ACTTTTCAGG TTACGGAATT 005680
005681 TCTTTAAGGT GTACCCTTGA GTTTAATATA CTTATTAATA ACTTATCATT ACAGAGAAAA AATTACCAGA AGTACAGGGT 005760
005761 GTTTTTAACG GACTTTCTTC TCTTGCACAT TGCTGGGCAT GGCGTGTACT GTGACAGGGC GGAGTGATGG GCTGAGAATG 005840
005841 TGTGTGTGTC TCCAACAGTT CCCAAACGTC TACATTTTCA AGAAAAAGGC AATCTACATC ATCTGGAAAA TTGTAACTTA 005920
005921 GTAATTAATT AGGATAATTT CCCTAGGTTC TCTGTGCTGC ATGAGACCAC AGCGTATTCA TTAAAGAGGA AAGCTGAATA 006000
006001 TTGGCGGAAA ACAGGGTTGT AAATTTGTAA CAAGTTTTTC TATCAGAAAA TGAAATGCAA TTTTCTGTCC TCTCTGAGCT 006080
006081 TTTACCACAT AGCTCTTAGC AATGGGTGTT TTTTCTGTCA TTCCACTCAA TTCTCACTCG AGTAAACCTC CAAGCAATAA 006160
006161 GAATGTTGTC TTTCCTGTTT AGACTAGACT GACTACCTTT CCAGGACAGT CCATTAAGTT GATTTCCAAT GGTGAAGGGT 006240
006241 CAGACACGCC TCCCCTGGGC AGATCAGGGA TAGTTCATAG CATTTGCCAA ATAGCTGTCT GCAGCTGCAG CCATCACCTC 006320
006321 CGTAATCAAC ACTGCCATTG TCTGAGCCTT CCCTTTGCAG GAATGGTGTC AGTGCACCCA GGCCTCGTAA GGGAGGCGGC 006400
006401 CCTTGCTACA GCTGCACCTG CCTCCTCCAT CACCACCTGC CTCCTCCATC ACCACCTGCC TGTCACCTGG GAGTCAGGCC 006480
006481 CGCTGCCCTG GAGGTGGGGT CAAACCAGTG CCAAAGTCAC CCAGGAGCCA GCCAGGGCCT GGGAGTTCTC CCTCATGACA 006560
006561 CGCCGGCAGC AGGTGAACAT TCTAAGGCTG ACACTTCTGG GCATTCGCTG AGATCTTGGG AAAGAACTAG CCCCCCGGCC 006640
006641 CTGCTTTCAC TTAGAGATGG GAACAACGAT TGCCCTGAGT TCCTGGGAGC TACAGGAGAA ATATGCGCCC TGAGTTCCTG 006720
006721 GGAGTTACAG GAGAAATATG CACGGTGTGC TTGGCCTGTG GCACCAGAGC TTTAGGGCAC TGGTCTTTCA TCGCTGGCCA 006800
006801 TGAAACAGCA AGGCTTTGAA AGGAAGGTAG ATGGAGTGTG CAAACCTTGT GGGAATCTTT GCTTCTTGGC AAAAGAATGA 006880
006881 ATAAGTGAAT TTGGTCATGG AGAAAATTGC ATGCTAGGGG CATGTTTGTA ACTACCGTCT GTGTTTGTAG TAAAGCACTC 006960
006961 GATAAGTATT TGCCAAAAGA ATGACCAATA AATCAATACA GCTCTTAAAT TTTTCAAGCC AATTTGACTT TATGCAACTT 007040
007041 TTGAAGCTCT TTCACAGATA ATGAAACAAA GGCACAAAGA AATTAAGTCA TACAGGGCCT TGGAGAGCTT ATTGAGCAAA 007120
007121 TATTTTGTGT TTTATTTATC AGTTCTGACT AGGATTTTAT AATTTACTCC TATAACTTCC ATATATTTTC CTTTTCTAAT 007200
007201 GTATTTTCTA GATTGAGTC
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Predicted Small Protein

Name NONHSAT124614_smProtein_6362:6610
Length 83
Molecular weight 9149.5533
Aromaticity 0.0609756097561
Instability index 54.3073170732
Isoelectric point 11.2509155273
Runs 13
Runs residual 0.0226348854398
Runs probability 0.0332096802685
Amino acid sequence MVSVHPGLVREAALATAAPASSITTCLLHHHLPVTWESGPLPWRWGQTSAKVTQEPARAW
EFSLMTRRQQVNILRLTLLGIR
Secondary structure LEELLHHHHHHHHHHHHLLLLLHHHHHHHLLLLEEELLLLLLLLLLLLLHHHLLLHHHHH
HHHHHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -