NONHSAT125740
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT125740 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3489 nt |
Genomic location |
chr8+:28428149..28431777 |
Exon number |
2 |
Exons |
28428149..28429688,28429829..28431777 |
Genome context |
|
Sequence |
000001 AAAAAAGAAA AAAAAAAAAG TAGAGATTGC ATTAGTTCCA TATCTCCGCA GAGTTCTCTG GTAGATTAAA TGTTCTCTGT 000080
000081 GCACTAGGCC AAGGAAGTTC CTGTTACCTT TGAAAATCAT TGTGTTTGCT CTGATTGTCT ACATTAGCTC ATATCAGTCT 000160 000161 TTTGAACACT GGTTCAAATC TGGGTGTTGG GTTAGGATCT GATGAGTAGA GAATAGTGGA AAGTTGATAT AGGAAGGTAT 000240 000241 ACTGGTTTCT GGTGTGATTC TTTAGCTACA TTTATTCCTT GTCTTATGTC ATTTCACTGG ATCATGTAAC TGTCCTGGCT 000320 000321 TTCAGAAATT ATATTAGATG CCCAGCCTTT CTCATTCAGA GATGCCTGTA TTATTATGTT ATTTCGATTG CCTACCAAAA 000400 000401 AAAAAAAAAA AAGAAAAGGT TTGTTTTTAG TTCTCTGCCT CTGCAAGTCT TTGTGATCAC ATTTGTTAAA TTGAATCTGA 000480 000481 GATTCAAATA TTTCATTTAA TATTTTCTGG GTTTTGATAA TGGGATATTC TGTAAGATAA AGCAAGTAAT CCTAGAGTGA 000560 000561 TTTACTTTAT GTTTAGCCAT CCACCATTTT CCTATTTCTC TACTCCTCCC ATTCTCCATT TTTAAAAGGA AATTAACAAA 000640 000641 TGTCTTCCTT TATCCCTGCC TCAGATAATT TTTCCCTGAA CTCATCTTGT CAGCAGAAAC ATTTAATGTG AAATAATTCT 000720 000721 GTATTTCTGA GACAAGATCA ACACAGTAGT TCTTTACATT GAGCTGAGGT GAATGTATAC TTAAAAATAC TCTATTTTCT 000800 000801 TTTTATATGA ACTTAAAATT TTTAAAATCA TATATGGGAC TCCCCAATGT GAAAATATTA GTCTGGACAT TCTCTTGCCA 000880 000881 TCAGGTGCTA TTTCTACCTT AGCTGTGAGT TAGACTAAAT CCAAATTTCG TATCATTCAT CTTTTTATAA TATTTAACTT 000960 000961 CCCTAGAATC ACCCCATTTC ATGTCTTTAA CCCCAACTTC CAACAACTTT TCTGCTTTTA TTTTCAAATG TCAAATTGTA 001040 001041 TTTTTGTGTT TTATTTTCTC ATTGAAGTGT AAAAGTATCA CATATATGAA GGAATGGCTG GTTTAGACAT TTACTTTGGC 001120 001121 ATAGTAAAGA TTGATATTGA TACCACCCAC CATCCTTTCC TCTAGCCCCA GAAAGAAAAG TTTGACAACT CAAAAACGAT 001200 001201 TAAATTATCT TATCTTGTTA TTTAATAGAA CAATGGAAGC TGTTTCGTCA AAATTAAAAT ACTTTACCAA AAAAATACTT 001280 001281 TTTTGTATTT TAATCTGATA GTGAATTTGG GGATTATTTA TGTAAATGTA TCATAATTAA TAGTAATTAT GAGTTATTTC 001360 001361 ACTCTCTGTA ATTTGTGATA CCCAAGATTC ATATTTATTT AATGTGAGGT GTTTTTTGAG GCTTTTTTGT TTTATCTTGT 001440 001441 TTTCTTAACT TTTTACAGTG TTGTTAGATT ATCGCGGTCA TCTCGGCATG TGGATCGCTC CTCCTGTAGA TCAGCTGTTC 001520 001521 TCTCTTAGAG TCAGGACAAG GATCTTTTAG AATAGGTATG TTAACTTCTC ATCCTAACCC TATCAATATA TCAGAGGCTT 001600 001601 TATGAAGGAG ACTCTACAGA TAACCACAAA TCTTATCAAG AAAATTCTCC TTAAAAAAAG TTATCCTTTA TTTTGTTGTT 001680 001681 AAATTTCCCA GTTTTTAAAA GTGTTTTATC AAAATGACTT CATAATTGAA GCAAATACCT TTTGGAAGTA TATATGTTAC 001760 001761 ATAAGACTTT CACTAAATCT GTGCGTAAAG CTTTTATAAT CTGAGATATT GTTATGTATT AGGTTTGTGC AAACCTAATA 001840 001841 TAAAAGGGTT CATCTGTAAG TATCATTTAG AGGCAAAATA ATTTCCCCCT CACATCTAAT GTGGACTCAA ATTTTGGCAA 001920 001921 CTGGAATGTT ATCCTCTTGG TAGGCATTCT AAATTAATGA ATACTGCTAT GTGGTGTAGT AAACAAATTT GCCATAAAAT 002000 002001 GCCATTTAAG GATTTTCTTT TTACCTTTAT TTCATTATAA AAGTATATGA GTTGAAGATC ATATAAAAAA TATGAAACTC 002080 002081 CTACACAGGA AATCCCCAAT TTTGTGATTT AATAGGTTGT AAAAAGAGTT GTTCCAAATT CAGACTACAT CTCATCATAT 002160 002161 AAATAATATT ATGAATAATA AGGGTAAAAG ATTAGCCAAC AAAAGCTAAT CTAGTACACC CCATAGAGGT ACTCCAGGTG 002240 002241 TCTTGGTTTT GGATAAATTT TTATAGTGGA GAAAGGTTAC TTTGATCTCT CAATAATTGC TTGGTACACT TCTTCCTAGG 002320 002321 CAATATGCTC ATGATACCCT CTTCATGTGA CCTATTCCTC AAATGCTGCA TTCTCCAAAA CTTCCTTACC TGCCTTCTAT 002400 002401 CCCCTAGTCA TTCTTATCAA TACTTCCAAA ATATAACCTA TCTCAAGTGT TAGAAATTTG CTTTAACTAA TTTATATTAA 002480 002481 AGTGTTAGTG ACTATAGCCC TTTTATCTCT CTTAAAGAGA AATCTGCATT AAAAGCAAAC ACATTGCTGT TAGCTCAAAT 002560 002561 TAATGTCAGT GAGTAGAATC TTAAGCTTTA AAACAAAAGT GGAAATAATT TAAATTAGTG TTGATGGGAC TATTTTGAGG 002640 002641 CAAGAGATAC CATTAAGTGA CCTAGCTTGG AAATCTGCCC CCTTTGCCCA AACCCATGTG ATGTCTGAAA CTACTGTATA 002720 002721 TTTTCAATGA CCTTGAGAAA GGGAGCTAGT CATTTGTATT TATGGGCCTT ATGAAGTCAG GGCCTGCTGA TCCTGTTTTT 002800 002801 TAAGTTCAAG CGCAATGCCT GAAGCATCCT AGATCTCCTT CACCCTCATT CTACCTGACA GACAGCTAGG TCTGTCTTCC 002880 002881 AGCTCTTTCT CATTGATACT ACCTTTACAT ATGAATACTA TCCATGCTTG TTAAAAAAAA AAAAAGTCTT TCCCCATTTT 002960 002961 ACTGTTACAA TTTTTCAAGA GCTATAAAGG TAGAAAAAGT ATTCCTTTTC ATTATTCTAA AAAATATGTC ATTTTTAAAT 003040 003041 AGCTGGCACT TAGCAGTTTA GTTTTCCAAA CTTTATTCTG AATCAAATTG CTGAGGTGAT TCTAAATGTC TAATGTTGAT 003120 003121 TTATCATATA AACATCTAAT TAGAAAGTGT TTATGCTAAA GACTTGTATT TTGTGGCATT AGTTCTTCAT GTTTCTTTTT 003200 003201 TATATGTTTA TTAAAATTGT TCACTTCCAA ATGAGTGGAA AAGTTGCTGT TGTTGGGATG TACAGGGCAA GTGCACTTGG 003280 003281 TTAGAGCATG AACTGGGAAT TTCACATTCT CTGATGTGCT TTGCACTCTG CTCTTGTAGA TTTATTTTGT TTACAGTAGA 003360 003361 CTGATGTCAG TTTTTGTAAA TGTTTTTTCT TAGCACTTTA ACTGTGAGTG TACAAACTGA TTTTAAATGT AGTGGTTGTA 003440 003441 TATTTTGGTT ATAAATTGGA GATTTTTAAT AAAATTAAAT AATTCTCTT |
Predicted Small Protein
Name | NONHSAT125740_smProtein_2324:2452 |
Length | 43 |
Molecular weight | 4924.8852 |
Aromaticity | 0.142857142857 |
Instability index | 63.6214285714 |
Isoelectric point | 7.61480712891 |
Runs | 6 |
Runs residual | 0.0333031946956 |
Runs probability | 0.0476505917683 |
Amino acid sequence | MLMIPSSCDLFLKCCILQNFLTCLLSPSHSYQYFQNITYLKC |
Secondary structure | LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHEEEEEL |
PRMN | - |
PiMo | - |