NONHSAT126105
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126105 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2198 nt |
Genomic location |
chr8+:38397070..38400589 |
Exon number |
2 |
Exons |
38397070..38397116,38398439..38400589 |
Genome context |
|
Sequence |
000001 atattcaatt gtatatttgt gccacatttt ctttctctgt tgcccagaaa aaagatttgc taaaatgact gacaatacac 000080
000081 agattaatag gagaaaaagg catataaatt tattaacata caaaaacatg ggtacaatat taaatatgag acccaaaggg 000160 000161 ccagatgatt gaggcttata tatctgcttc atagggaaga gggagatggg gaaaatgcag gggttgttaa tgatttttag 000240 000241 gggaaatgaa tgggcccagg aggctcagac attatcttgt aaatgattct cctaggaaac taaacgacgc cagcaagtta 000320 000321 ccggaaggtg aggggtgaaa cttaacctgg tagataaagc ctcccaggtt atctcttggc actgcctcag aggactagat 000400 000401 gaagagtcat ctgactttag tctccattct tctctggtgg ttaatctttt ctgattattt gatgagattc ctaggaaggg 000480 000481 gatcttaaga caattgcatt tcttttggaa agaagtttcc ttagtcagat aaggaaattc taggggaagt ctctaggggg 000560 000561 atagagactc cagaagtctc tagaagtctc taggcgatag aaacagatga ggccagaaag gccttattct gaggtagctt 000640 000641 ctaagtcctt tctattttag ttcaaagtgt tcagcatacc aaagcgccat acttttgagg tgttgttttc tgagccccaa 000720 000721 catatacata ttataaagaa tttaagataa aaatagtcta ttatatttaa ccagattttt accatttttg tttctctgtc 000800 000801 ttcattcttg atgttctaaa tttctttcag gtatcctctt tcttccgttt gaagaacttt ctttagtatt tattttacaa 000880 000881 caagtctact aatgacaaat tctcttgatt tttcacttga gaacgccttt atttccctct cattcttgaa gaatattttc 000960 000961 attggatata gaattctTTT ACAAAATTGt cacataatat aaaattcacc attttaacaa ttttaaagtg tacagttcag 001040 001041 tggtttttgg tattttcata atgttgtgca accatcacta ttatctaatt ctagaagatt tcatcacctg aaaactctgt 001120 001121 acccatgaag cagtcattcc tgatatcccc cccgtcccta gccccagcaa cccctcagct gctcttcatt tctatggatt 001200 001201 tgtttatcct ggatatttca ttaaatggaa taatacaatg tgttgccttt ttttctctgg cttctttcac ttagcatGTT 001280 001281 Cttttctttt cttttctttt tttttttttg ggagagagtc tcactctgtc acccaggctg gagtgcagtg gtgcaatctc 001360 001361 gcgtcactgc aacctcaacc tcctgggttc aagcaattct tctgcctcag catcctgagt agctgggact acaggtatac 001440 001441 atcgccacgc ccaactaatt tttttgtatt ttagtagaga cggggtttca ccgtgttgcc caggctggtc tcgaactcct 001520 001521 gagctcaggc aatccgccca ccttggcctc ccaaagtgct aggattacag gcgtgagcca ctgcacccgg ccAGGATGTt 001600 001601 cccctcccct ccccttccct cccccttccc ctcccctccc ctccccctct ccattcccct cccctcccct ccccttctct 001680 001681 cctctccTGT CTTCtttctc ttttctgttt tttcttttct ttctgagaca gggtctgctc tgtcacccag gctagagtgc 001760 001761 agtagcgcga tctcagctct ctgcagcctc gacctcccag gctcaagtga cccgcccacc tcggcctctt aacatgccgg 001840 001841 gattacggac tagagccacc ccacccagcc acttAGCatg ttttaaaagt tcgtcaattt tggcatttat cagcatttca 001920 001921 ttttttatga ttgaataata gtccattgta gaaatacacc atattttgtt tatccattca tcagctgatg gacatttgag 002000 002001 tagtttcttc cttttggcta ttataaataa tgctgctatg agcaatcctg tacaagtttt tgtttgaaca cctgttttca 002080 002081 attctcttgg ttgtatacct ggggttgaat tgctaggtca tattacgttt aaattttcaa acatcctatg tttaactttt 002160 002161 tgaggaactg ccaaactgtt ttcttttttc tttttttt |
Predicted Small Protein
Name | NONHSAT126105_smProtein_1595:1831 |
Length | 79 |
Molecular weight | 8016.1698 |
Aromaticity | 0.0897435897436 |
Instability index | 96.2653846154 |
Isoelectric point | 3.91632080078 |
Runs | 6 |
Runs residual | 0.0567542213884 |
Runs probability | 0.0606636047812 |
Amino acid sequence | MFPSPPLPSPFPSPPLPLSIPLPSPPLLSSPVFFLFSVFSFLSETGSALSPRLECSSAIS ALCSLDLPGSSDPPTSAS |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEHHHHLLLLLLLLLLLLLHHHHH HHHLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiii |