NONHSAT126656
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126656 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1662 nt |
Genomic location |
chr8+:56769534..56771876 |
Exon number |
2 |
Exons |
56769534..56769959,56770641..56771876 |
Genome context |
|
Sequence |
000001 ccatcgtgcc cggcctcggc taatttttat atttttcagt agagacgaag cttcaccgtg ttagccggga tggtctcaat 000080
000081 ctcctgacct catgatgtgc ccacctcggc ctcccaaagt gctgagatta caggtgtgag ccactgcccc tggccTGACC 000160 000161 TTTTCGTTTT CTCACTGATG Cattcactct tttgttcaac ccttattgag ttcacgctat gtgtttgaaa gttctgagcc 000240 000241 cttggggaat gcagagtgaa caagacattc tccttgccct ccagaagtta aatatagcag agaaagTGGG TACAGTCGGA 000320 000321 AATTATTCTC TCTCTTGttt cttttctttt tttcttttct tttttttttt GAGATGGAGT CTTACTCTGT Tgcccggtta 000400 000401 attttcgtat ttttagtaga gatgggaaaa aacacaaaaa ttagccaggc atggtggagt atgccttgga gtcccagcta 000480 000481 ctcaggaggc tgaggctaga agatcacttg agcctgggag gcagaggctg cagtgagcca tgattgtgct actgcactcc 000560 000561 agcctaggtg acagacggag actctgtctc taaataaata aataaataaa tcctatttta aaacGCTATC ACCCTTTAAT 000640 000641 ACTTTCTACA CAATtcctac aaaaccacag aacaaggata aaaattgggt aattaacact gatgtattac ttccatctaa 000720 000721 tcttcagata ccctttaggt tttgccagtt gtcccaacca tgtcctttag agcaagactt ccagatcaga gtcaggcatt 000800 000801 gcattgagcg aagatctctt cagtatcatt tagactagga cagttcctgg gacctttgga agattacagg tcagttattt 000880 000881 cgaagaaagt ccctcactca ggcctgtctg atgcttcttc ttatgattga ctcaggctct gcttccttgg tgatgccatg 000960 000961 tctttctgtg tgtcctagaa gatggtagca ataccagttt gtctgatgat tattttgacc ccttgaaatt gatgtcggcc 001040 001041 aggtttttcc actgaatggt taactctttt cccctttata actaagtatt ttctgaagag aagctttgaa agtaggtaag 001120 001121 tattctgttc ctcatcaagc ttcccattta aatgtcagca CAggccaggc gcggtggctc atgcatgtaa tcccagcact 001200 001201 ttgggaggcc aagacaggca gatcattgga gaccaggagt tggagaccag cctgggcaac atagcgagac ccctgtctct 001280 001281 actgaaaata aaaaaaaatt agccaggcat ggtgctgcgt gcctgcaatc ccatctactc cagagactga ggcatgagaa 001360 001361 tctcttgaac ctgggaggtg gaggttgcag tgagccaaga tcacgccact gtactccagc ctgggcgaca gagcaaaact 001440 001441 ctgtctctaa ataaataaat aaaTAGAAGT AAatgtcagc atagacttat gatttgtatt ttcttctaca ggttacactc 001520 001521 cattataatt tgctacttac attattttat aatttaacca aagctggtta aattgaccca gctttggcaa gtgggagctt 001600 001601 ttttagggta gccctggtat gcttttggga ctgttcccat catgttttga gtcctcactt tc |
Predicted Small Protein
Name | NONHSAT126656_smProtein_218:400 |
Length | 61 |
Molecular weight | 6897.1497 |
Aromaticity | 0.183333333333 |
Instability index | 59.9016666667 |
Isoelectric point | 7.78997802734 |
Runs | 7 |
Runs residual | 0.0330673758865 |
Runs probability | 0.0680470386353 |
Amino acid sequence | MCLKVLSPWGMQSEQDILLALQKLNIAEKVGTVGNYSLSCFFSFFLFFFFLRWSLTLLPG |
Secondary structure | LEEEEELLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTToooooo |