NONHSAT128044
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128044 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4718 nt |
Genomic location |
chr8+:102184675..102206979 |
Exon number |
12 |
Exons |
102184675..102185089,102185400..102185828,102187525..102188123,102189948..102190741,102193084..102193501,102194667..102195175,102197261..102197622,102198755..102199243,102205019..102205124,102205782..102205943,102206528..102206733,102206751..102206979 |
Genome context |
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Sequence |
000001 GTTTAAAAAA GAAAATGGGG GGAGGGGAAT GTATGTGGGT TTGTTTAAAT GCTGAAGAAA ACTGTTCTAA GCAGCTGGAT 000080
000081 GAATAAAAGG GAGGAGCACT AAAGAAAGAA TGCGCTAAAT CTAAAGATAC AAGAACAACA CCCAGGAATT GATTGAAAAT 000160 000161 GCTTTGGTGA CAAGTGAGGC ATGTAATGAC AAGAAAGCAG CATGTGTGCA TATTGAGGAG TGCATGTGGA AAACAGGTTT 000240 000241 CTCCTTTTAA TTAGCTTTGC CGCTGGGAGG ACCTTCTCTC TCCACTTTCT GTCCAGCTCT TCCATCCCAG AATTCCACTC 000320 000321 TGGGTTCTTG TGATGTGCTA ACGAGGCTGC AGGGCAGCTC TGATTGAGTG GGCCAATAAT ACTGGCTCAA GGCCACCTAG 000400 000401 AGAAGTGTTC TCCCCGTGTA TGTAAGGGGA AGTGCTGGGT GCAGCCTCTG GGGTGGGGTT ATTCCTATCC TCCTCTTTCC 000480 000481 TGCCTGGACC ATGCAGATGA GGGCCATCCC CTAGAGATAA TGAAGCAATA AGATGGGAGA TACCTGGCAG TCCTTGACAC 000560 000561 CATGGACCCG CCATACTAGT CTTTGGCTGC AAACTCTCAC GCTGTCATGG AAGATAAATA AACCTCAATA CTGCTTAAGC 000640 000641 CATTGAAACT TTAGGTCTCT GTTGCACACA GATGAACCCA TAGTCCAACA AATGTATCTT CTTGACTAAA TCTTACCTTC 000720 000721 TTACTCTGAT GATTTATATT CAGAGAATAA ATTTAACTTT GTCTATATCT GGGGTAAAAA AGAACAGCTC TTCAATAAAT 000800 000801 CTGCTTCTCT CCAAAAATAT TCCAGAAAAT TCATGTGATT GGAATTATGT TGAGAAATTT TTATTTCGTA TTTTTATCTT 000880 000881 TTATTTCAAT TTTTCTACAA ACTTTTTGAA GTCCCCTGTG TGTATGTATA TGTACATTCC TGAGCTGGAG TATAACATTA 000960 000961 CTTTGGACAA AATTCTTTAC ATTAAAATTC ACTTCTAGAA TAAAGAGGTT CACAACTATA GGTTTCAAAG AATATCAGAA 001040 001041 CAAGAAAGAG AACAAGAGAT CTCTCTCCAG GTTAAACATC ATTCCACTAT CGATGAGGTT TGAATGTAGT TGCTCAAGCA 001120 001121 GCTGTATATT CACCTAAACA GAGTAACAAC CCAGTCTACA TTTCTCCACC ATATCCATCA TATAATGTGA GGATTTCGGA 001200 001201 GTGATTTTGT CAGATGTAGG GTTAAACTCC ATTGCCAGCA CCCCTCAATG TACCCAAACA GGAATAGTCT ACTTTTCCTG 001280 001281 ATTCCTTTTT AAAGTCTCAC AAATTATCTT TTTAATTAAG CATTCTATAA TTTTTTCCCA GGAAACAGCT TCGATTTTAT 001360 001361 CAGCTGGTAT TTATTGTCCA TGAGTCACCT TTTGGACTAC TGGGTTGACA TTTCCTCAAT TCCTGTCTTT TGGCCACTCT 001440 001441 CATGAGAGCT GAAAAACATT TTTACTACAT CTTGCCTCTC GCAGTTTGAA ACTGGGGTTA GGAAACATGG CCTATGGATG 001520 001521 GTAGTGGCTT GTGGTCCCTG GTTTTAAACT GCTCCCATGG TGGAATCACT TGAGTCTCTC TCCTTTCATC TCCACACAAA 001600 001601 TATTCTCCAT CCCACCTCTT CGTGCAGGCT TCTGGCTTTC TGTGCACTTT CAGACATTTT GGACATATAA TGCTCCTCTG 001680 001681 CTATCTGTTC TCTCAGGGCT TCCATATTCT AGTCCTGAGC CCTGTGTTTC AGGGGTATCT AGGAAATCTT GATTTCTTTC 001760 001761 AGGTGTTAAC ATCTCAAGTT CCTTTGCTTC ATATTCACAC TTGAAATCAG ATATAACATT CCTTACTTTT TCCTCCTGTT 001840 001841 ATTTTTGCAT GCAAATTAAG AGATTCTCCA ATTGCTCTGT GTCATACGTT TTCTTACGAA TAACAGGGCT TATAGTTTCA 001920 001921 CTTGAGTAAT TTTTCCACCC TCTTAAACTG CAGTTTAAGG TCTTGATGAG GTTACCAAAT CTCTGACAAG CATATATTCT 002000 002001 TTCCAGTCTT CACAGGGCAC GCTTCGGCCC TTGCTAGGAG TCCATCGTTC TGCCATAACA TTTGCTCCCA GGTCATCTGC 002080 002081 TTGCAAGAGG CAATCGAGAG TTTGGGAAAC CCTTACAAAA GAAATGACAA TAGTTTATTT TTAGCTCCTG ACATTTTGTG 002160 002161 CTCCTAATAC CCAGTAAGCC TTTCTGCCCC ACAGTCAGGA TGCTTTAATT GGCAGTAAAT GGTGAGGCGG TAACCCATCC 002240 002241 AGAAAAACTA ACTTTTATTT GATAGTATGT ATAAAACCAT CTGTTCATTT CCCATACCTC TTCCAGACAT GACCTTCAAC 002320 002321 TGGAAGGGAT TAAAACAAAC AAACAAACAA AAAAAAAAAA CACAAAAAAC ACTTGTGCCC CAGAGCCTTT GGTTTACCAC 002400 002401 CCAGGGCTCT GATCACTCGA GATACATTCC AGAATTCATT TAACATGTGT TCCCACCGGA GTCAGCAGAA TGGGTAACCA 002480 002481 CGGGCAGACA GCACATTCTG GCAATTCTCA GGCCCATGCT CCAGAAAGAC AGCCTTAAGT TCATACTCAG GGTTTATAAA 002560 002561 TAGTGAGTCA TCAACCACTA CCAGTTGTCT TGGTACTAGT GACATAATCT TGTAACTCCT GGTGACTAGA GAGCTTCATT 002640 002641 AATTTTGTGG AGAATTTTTT TTTTTTTTTT TGACAGTGAT GGAGTCTCAT TTTGTTGCCC AGGCTGGAGT GCAGTGACGC 002720 002721 AATCTCAGCT CACTGAGACC TCCATCTCCC AGGTTCAAGT GATCCTCCTG CTTCAGCCTC CTGAGTAGCT GGGATTACAG 002800 002801 GTCTGCACTA TGAGGCCCAG CTAATTTTTG TATTTTTAGT AGACACAGAG TTTTGCTATG AGGCTGGTCT CGAACTCATG 002880 002881 ACCTCAAGCC ATCCGCTGGC CTTGGCCTCC CAAAGCGCTG GGATTGTAGG CGTGAGCCAC CGTGACTGGC CCAAACATTT 002960 002961 AACAAAGAAA AACAGTGTAT CATCTTTGAG AGACTAATGA AAAGTCAATA AAACAAATCT GGTAGAAGTA TAAATCACAG 003040 003041 AGCAGAATTG TATTTTACCT TTCATTAAAA GAAAAAAAAA AGGATCTTAG TGTTCAGACA GTAGCTTGGG AAGGAGATCA 003120 003121 ACACTGACTG ATATCCAGTC ATTGTCAGTG TTCTGTTAAA ACTGTTTTTT TTGAGACGGA GTCTCGCTCT GTCGCCCAGG 003200 003201 CTGGAGTGCA GGCATGTATT ACTTTTATAA GTAAAAACTA CCCCCAACAT GACTACTCAA GAATGAGATA CTATGAAGAA 003280 003281 AAGTTCCAGA GCATTTACAA GCTAAGAGAG GCATTTCCCA TAGCTATTAA TTCAAAATAT AAGAAACCTC AAGTATTTTG 003360 003361 AACACTTATA CCTCTCCAGA CTGGACACCC CGATGCAGCA ATGTATTTTC ATAACCACCC CTTCCAGAGA GTATTACCTT 003440 003441 TTAGATAACT AATGAGCTTT TTTTAAAATA AAAAGTTTCT ATTATGTGCA GCTATAGAGC TAAATGCTCA CAACTACTCA 003520 003521 GTAAAGAGAA ACCTAGGCCT CGGAGGCTTT AGCCACTTGC CGACAAACTG AATGACAGCT TCTGAATGGC TCCTCTATCA 003600 003601 CTTCCCCATA CAAAAACCTT TCCCACAGAC ACCTGGCCTT CCAACCTACT TCTACCAGTG TAGAAGCTTT TGTGCATACT 003680 003681 TTTAACCCAG ACAGTTCATG TCTAGGAATT CTCCCAAGAA AATAACCACG ATCACTTTTT TTGACTGAAA AGAATAAAAT 003760 003761 GGATCTCGGG GTTTAAACTG TTGATCAGAA AGGTTATCAC AAGTTCAGTA TTATTTTCCT GTTCAACCAA CAGTGCGTAA 003840 003841 GTGGCTCAAG GTGAGTTCTA TTTTCATGCT ACCAATAAAA TCCAGTGCAT TTATATATAT TAACATAATT TATAACTTTA 003920 003921 TTTTGTAATT TTATAAATTA TTTTTTAAAT ATTACTTCAT GTTTACGTGC ATTTTATAAA ATTTATATAT AAAGTTACAT 004000 004001 TTTATACATA ATGAGCTACG AAAAAGCACA AGCAGAAATG GGCAAATGTG AGAAGGGTAT GTGTAAAGAC ACACTGTGTT 004080 004081 AATTTCAGTA GAGGGAGGAG GGATAGGAAG ACAGTGGGAA GTGTTACTAT GAAAATCCGC ATACATAAAT ATTAAATAAT 004160 004161 AGAACCTAAT AAAAGACAGA TCCCAAACAT GAAAGGTTAT TTTGTTACTG TAACTTACTA AACTGACTTA ATCTAATAAA 004240 004241 AATACTATTT CTTCATAGTA GTCAGGTAAC AATAAAAAAC ATACAGGAAA ATGGTTAAAA AAAACTACAG GTAATCTACC 004320 004321 CAATGGATCA TTATGCAGCC ACAAAAATTC CACTTAGCAC AGTTTATAAC ACGAAAAACC CACCTGTTAT GTTGTTAAAT 004400 004401 GAAATGGCAG AGTACAAAGA CATAATATGA AAAAAGTGAC TACAAAATTC AAAAACATGC ATTAATTTAA AAAAATCTAT 004480 004481 GTGGTAAGAA GACAGACATG GATACTATTC CTCAAAATGT TTTGTACTGG TCAATTTGTA AAATCCAACC TTACCACAGT 004560 004561 CTTCACATTT TTATATATGA GATATATTTC AAAATGTGTT ACTTTTATAG TGAAGTAGAA GACAAGAAAT GTCGTGTATA 004640 004641 GCCACACTAT AGTCTGGGGT TATTTAGTGC AGGGACAAAC ATCCCTAAAT ACAGCTTTTT GGGCATTAGT AGTATCAC |
Predicted Small Protein
Name | NONHSAT128044_smProtein_728:997 |
Length | 90 |
Molecular weight | 10707.5241 |
Aromaticity | 0.179775280899 |
Instability index | 51.4731460674 |
Isoelectric point | 8.92816162109 |
Runs | 14 |
Runs residual | 0.0141000220313 |
Runs probability | 0.068835642365 |
Amino acid sequence | MIYIQRINLTLSISGVKKNSSSINLLLSKNIPENSCDWNYVEKFLFRIFIFYFNFSTNFL KSPVCMYMYIPELEYNITLDKILYIKIHF |
Secondary structure | LEEEEEEEEEEEEEEEELLLHHHHHHHHLLLLLLLLLHHHHHHHHHHHHEEEEELLLLLL LLLEEEEEEELLLLEEEELLLEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHH HLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTT Toooooooooooooooooooooooooooo |