NONHSAT128138
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128138 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2060 nt |
Genomic location |
chr8-:103949852..104014651 |
Exon number |
7 |
Exons |
103949852..103949985,103953851..103953926,103954149..103954281,103961693..103962042,103989815..103990104,104012966..104013498,104014108..104014651 |
Genome context |
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Sequence |
000001 GAGCAATAAA AATTTTTAAT CATCTGGGTG CAGGTGGGCT GAGTCTGAAA AGAGAGTCAG CAAAGGGAAA TAGGGATAAG 000080
000081 GCCATTTTAT AGGATTTGGG TAGGTAGTGG AAAATTACAG TCAAAGGGGG TTGTTCTCTG GCAGGCAGGG GTGGGGTGTC 000160 000161 ACAAGGTGCT CAGTAGGGGA GCTTCTGAGC CAGGAGAAGG AATTTCACAA GGTAATGTCA TCAGTTAAGG CAGGAATCAG 000240 000241 CCATTTTCAC TTCTTTTGTG ATTCTTCAGT TGCTTCAGGC CATCTGGATG TATACGTGCA GGTCACAGGG GATATGATGG 000320 000321 CTTAGCTTGG GCTCAGAGGC CTGACATCTT CTTTCTTAAT TTCTTTCACA CATACCCCTT CCTTTCTGCT TCTATGGCCG 000400 000401 ATATCCTGGT TCAGCCCCTG ACTCTATCAC TTTTAACCTG AAATAACTGC AATATCGCTA AAACGTATTC CTCTTCTTGT 000480 000481 TCTCCTCCCA CCCCAATCCT TCCTGCATAC TCCAGAACAG CTCCCCATTC AGAAACTTTT TTTTTTTTTT TTTTCTTTTA 000560 000561 AGTAGAGATG GGGTTTCTCC ATGTTGGTTA GACTGGTCTC AAACTCCTGA TCTCAGGTGA TCCACCTGCC TCAGCCTCCC 000640 000641 GAAGTGCTGG GATTACAGGC ATGAGCCACC ACGCCTGGCT GTTTCAGAAA CTTAAATGTG AGTTCCCATT GTCTTTAAAT 000720 000721 TCATGTCCAA GCTCCCTGGA GTACCAAGCT TCCAAAATTA GACCCAAAGT AATCTTGTTA GGCATGACTC CAAATAAGCA 000800 000801 TGCTGTATAG AAACTCTTCA TTTCAGACAA GATACTTTAC TCCTAATCAC CCACACACCC CTTAGAGCCT CCTTCCTTCA 000880 000881 GCCTTGGATT TACGTAAGGT CGCTCTTTGC CTCCTTTTAC CTCCATCTAC TGAAACTGAA CCTGTTTTCC AAGGCCCAAA 000960 000961 TCAAAGTCTG AAATTTTCCC ATCACCTGAT ATGGAAGTTA TTTATAAAAT TAATAATGAT GATTAAAAAC AATAGCTACC 001040 001041 ATTCTTTGGG CATTTACTCT GTGCCAGCCA GGGTAAATAG AACTTTTGAA GTATTTTTTA ATAGATTGAT TAGATACACA 001120 001121 CTACACTCAC TGCAAGGATT CAGGTGGTGG AAAATAAAGC AGTGAAGATC TCTTGCTTTG CAGAAATATT TCTTGGATTT 001200 001201 CATATACTTT TAAGGCCATA TTGGAAGCTG GCAAAGATCC CACTGAGTCC TGGTTGGTAA GTAAACACAG CCTGCTTTTT 001280 001281 AGCTTCCAGC TCTTTGCAGA GAACCATGAT CCTCCTTTTC CTTTCTCCAG GGCTAACCCA CTTCTTCCTA CGCTCAGATT 001360 001361 TCTGATTATG GAGTTTCTCT CTTGTCACCC AGGCTGGAGT GCAACGGTGC AACCTCGGCT CACCACAACC TCCGCCTCCC 001440 001441 AGGTTCAAGC AATTCTCCTG CCTCAGCCTC CTGAGTAGCT GGGATTACAG GCATGCACCA CCACGCCCAG CTAATTTTGT 001520 001521 ATTTTTAGTA GAGACAGGGT TTCTCCATGT TGGTCAGGCT GGTCTTAAAC TCCTGACCTC AGGTGATCTG CCCGCCTTGG 001600 001601 CCTCTCAAAG TGCTGGGATT ACGGATGTGA GCCACCGCGC CCAGCCAGGA AGTTATTTTC TGTAGAGAAG CTTAAAGCAT 001680 001681 TTTAGGGTGA TTCTACAGAC ACAAGAAACA GGGTTATCTT CAACTATACG TGAGATTTCT GTTGATTGAT AGTTCAGATG 001760 001761 TCTTCTGTAA GGCCAGGCTC TCTCCTTCCA GAGTTGTCTT TTTCTCTGTC TCAATAGCCC ATGTTTCTGA GGCCATATGC 001840 001841 CTGAGCATCC TTTCTATTGT GGGATGTAAT CGATAAGCCA GTGTAGCCAG TGCTGTCCTG GTCCTGTTGG CTGGATCCTA 001920 001921 CACTGTCTAA GAACTTCCAA CAGATGCTCC CCTGAGGCGA AGACTGGTTT CCAGAATTCC ACTCTTCTAC AAGCCTGAGA 002000 002001 AAATTCTAAT TGCTTGACCT TCAGAACTCA GGAAGACCTT TTTTGACTGT GGTTTGTGTC |
Predicted Small Protein
Name | NONHSAT128138_smProtein_1367:1477 |
Length | 37 |
Molecular weight | 3922.4435 |
Aromaticity | 0.0555555555556 |
Instability index | 68.55 |
Isoelectric point | 5.53082275391 |
Runs | 7 |
Runs residual | 0.013986013986 |
Runs probability | 0.0355944179473 |
Amino acid sequence | MEFLSCHPGWSATVQPRLTTTSASQVQAILLPQPPE |
Secondary structure | LEEELLLLLLLLEELLLLLLLLHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |