NONHSAT129183
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT129183 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
5753 nt |
Genomic location |
chr8-:133133106..133138858 |
Exon number |
1 |
Exons |
133133106..133138858 |
Genome context |
|
Sequence |
000001 GTATAGACAT AGACAAAATA CATGTTTTAT GAATGAATAA ATAATAAGAA CCTTAAGAGC TGTTTTTTTC CCATTTAAGA 000080
000081 AAACAAAAAG GAAAAGAGAA AAATGATCTT CTGGAATAAC TCTGCTTTGA TATTCTCCTT TTGTTCCCCA AAAAATATAT 000160 000161 TCCAGAAAGG CAAACCAAAC CTGCTCAAGT TGCCTATGCA CAGACAATCT CAACAATATG GCTCACAGTG AGCAAGCAGA 000240 000241 AATTCAGGGT CTGGAATTGA ATGTGAGTTA TGGGAAGAAA CAGTGTGTGC TTTCACAAAG ATCCTTTTGT CAGACAAGGG 000320 000321 AACAGCATGA TAATCCAATG GAACTGGTTA ACATGACCCA AGATGACATG ACCACAGATA TACTAGTCGT TCTGAAACTT 000400 000401 GCCCAAGAAA TTGCAATCGT TTCAGCAGAA CTCCATGAAA TATTGACAAA TTAATTCCAT CATCAAACTA GGAGTGATAT 000480 000481 TATCAGGTAA AACTATGATC TCATGTATGT ATTTGGTCTT TCTGGGTCAC AATGTGACAT GAAAAATTTT AAAGGTCATA 000560 000561 TTTTAGCAAG ATCAAAATGA ATTAGATAAA TCAACTTCAC AAATGTTAAG CGAAACATGA TCCTATTGAG CTGAGAAAGA 000640 000641 AGTACTTGAG ATCGTTTGAG TTTTGACTAT CAAATGTCAG CACAAAAGCA AATATCAAAA GCTTAAGAAA AAAATTATTT 000720 000721 CAGGAAAAGA AAAACACATC AAATTGAGAA AGTGTTGTTG AATAACTTTG TTTTTAGAAC TGGAAATTTA GGCTTATTAG 000800 000801 ACATGACATT GATATTACAA AGCCCTAGTT TTCATGAAAA CATAACTAGA TAACCCCAAG GTGTATAGGT TAAAATGAAC 000880 000881 TAATTAATCA ACAATTATGC ATCCTGTGTC TATTTTGTGC AAGGTACTTC CTAGACACTG TAGTTTGAAA GAATAATTTC 000960 000961 CTGTAGAAAA ACCTAATCTA ATAGGACCTA CTCATAATTT GGCAAAATCA TCCTCATAAT TCCATGCTAC TGAAATGGGG 001040 001041 GTGTAATAAA GAAAAAATCA TTTGTTTATT CATTTAACAG GGTTTATTAA GCACCAATAT ATGCCCAGAA CTTTGCAGTG 001120 001121 CACTGGAAGT TCAGAGATAA GAAAACCACA GTTTCTGCCA TCAAAATGCT AGGAATCTAG AGGTCTCAAA CATCAGAGGT 001200 001201 CCCTTCAAAC TATGTCTACC AGGAAAATAA AATACCTGAT TTCATCCCTG CAAACAACTC TATACAGACA GAAATGCTTC 001280 001281 CTAGCTTGGA AACTATAGAA AATTGAACAT GAAAATGAGA GCAAAGGTTC TACATCAAAA TGGCAATGAT CCAATCAGCC 001360 001361 CAGTCAAGGC TGAGTGGGTT GAATGGGGAC TTCGAGTTTG GATTCAATGC TTTGAACTTC ATAGCTCCAG AGAAGCTGTG 001440 001441 CAAAAAGGGG GGATTCTAGG GAATCTGAGG AAGATTGTTG GAGAAACCAG CTTTCTTCTT GTCTCCTAAT CCCTGCTAAG 001520 001521 ATTGATACCA GTCAAGGAGC TGAGTTACTT TCATTTCATT ATGTTGACCA AGAGAAGCTT ATGATACAGA CTATGACACA 001600 001601 GCACCTATTT CAAGAGAAAG ATGTTACTCT ACTTATGGGA ACCTGCAGAT CAAATTCTCC TGGGGCAAGA GAAGAAATTT 001680 001681 GTTCAGCAGC CTAAGAAGTC AACTGTACTT TGGACAGTGC TGCCAAACAC ACCCCAGGAT TCTCCCACCC CTGTGCTTTC 001760 001761 CCAGAAGATG CCACATAGCT GGTATTTGGT TTTCATGAAT AACCAAAGAT TCTTCTTTGC TTCCTGAACC CCAGGCATCC 001840 001841 TTAGGAATTT GCTTCATGTC CTCACTTGTC CTTGAAGGCT TGTTTTTCAG GATGAACTTT TAAAGTCTAA GTTGTTTATA 001920 001921 TTCAAATCAA CCCAATGCTA TTGTTGCTGA TATTAAACCA TTCCAAACTG AGCCAACTGG CCCCTAAACA AGCCAGCAGG 002000 002001 CAGCCCCTCA CTAATGCCCA GTTTAGAACA TGTTAGGACC AGGCTATCTG CATAGCTTTA GTGGTTTTAG AAGCCAGTAA 002080 002081 TGGCAGTGTA AAAGAGGAAT CATACAGAGA TGACCTGGAA GAAAATTTGA GTTTCAGCAC ATTCAAAAGC ATTTGACTCT 002160 002161 TCTGCCGTGT TTTGATTTTC AAGTGAGACA ATCAATGTAC ACACAAAGCC TCTAGTACAA TGACTGATGC ATACTAGGGA 002240 002241 CTGTTATTTA TGTTATTTTT TTACAGTATG CATGGACTTC ATTGTCTCAG TCTTTGGTGT TACTTATAAA CTCTAAATTT 002320 002321 ACACCAAAAA AATTTTTTTT CAGAAAAAGA ATCGTGGAGA AACAATCCTA ATTATTAAAT CAAATGCTTT CACAATTGCT 002400 002401 TTTTAAATAA GTACATCTCT GCAAATAAAA ATGCTTGCTC TTGTCTACCA CAATAAAGAA CAGAAGGAAT CTTGGAATGA 002480 002481 AGAGAGGCAG GAATGTTGGA TCTCAGTGGC TGAGTTGTGG CAATTCCATT GGACATATAG TACCAGATGT TGCACCATCT 002560 002561 GGATGATGTG TAGGAGATAA AGCCAAATTG CAAAAATAAA AGACTCATGA TTTCCCAAGG AAAGTCAACT GTGCATGGTG 002640 002641 GCTATCAGAC AACACCCTAG CAATGAATGG GGGAACTTGC AGAAGAAAGA GTTAATGCTT GCTTAAACCT TCCCTGGGGA 002720 002721 GATTTGTTCC CAGGCTTTCA CGGCTTTAAC CTCAGCAACC CTGTAAGAAA ATTGTGATTC ATATTTTGAT TTGTTATCAT 002800 002801 AGATGCAAAG AGACATAATT TCATGGATTC TAAGATACAC AGAGCAAGAA GAGATTTTGA TCACCCAGAA CAACCACCTG 002880 002881 TCTTTTTAGA TCAAGAAGCA GAAGCTCAGA GCAAAGAACA TCACACCACG TCCCTCAGTG ATTGAAGCAG TGATTGAGTC 002960 002961 ACAGAATAAA TCTGGAACTC AGGTCTTCTG ATCTTTGCTC CAGATGTTAG AGACAAAACT AAAAGTAAAA TACCAAGTGA 003040 003041 AATCAAAGCA TCACGATTGA GCCCAGAACA TGAAAAAGAA CTTCCTGGCC CACTTGAGAA ACTGTTAAAC CGGACATACC 003120 003121 TTTGGGGACT TCTTCCCTTC TCTGGAATAA GATTGATGTT TCCATGCTGT GAAAGACGAT GATGTTCCTT CTCCCAGATT 003200 003201 CCTGCTGTCT TCAAAAGGCC TAGCAAAAAC CACTGCTGCT GGGTGCAGTT GAGAAAGGGA ATGAAGAACA ATCCCATGGC 003280 003281 CATGCAGGCA CTCCTCCCCT CCACCTCTCT GCCCTCCACC CCTCTGCCCT CTCCTACCTT GTTCCTTCTT GGTCCTGCCA 003360 003361 TGTTTGGACT GGTTCACCTT TTTGGCCCAT CACTTGGGCT CATTCAGCAA CAGTCATGCC TTAGGTTGCA TCCTCATCTA 003440 003441 TAGGCCAATT AAACAGGGTT TCTTCTTGAT AAATCCCTAT GGTTTTGATT TTAGGAAGTC AGGCATGATT TCTTTTGGGA 003520 003521 TCTATATGAC CCAAAGTGGC CAGTTTTACC AAAGGTGTCC CTTTGCACTG GGATCTCTGG GTCTCATTTG AACACAGCTT 003600 003601 GGGTCCTCTT GCCTTGTCCC AGAGAATCCC CATGTTGTCA GGACATAAGC AGATACTCTA GGGCCTTCAC CAAAAGCTAC 003680 003681 AAAGAAGCAG ACAGGACTCA ACTTAGGACA TCTTATGGTT ATGTAACTAA GAGATTATTT TAGGAAGTAA ACAGGCCTCT 003760 003761 GTTGGCTCAA ATGAACATCT TCATTGTTAG TTTCCACTTA CATTGTTCTC GGGATAAATC GGCCAGAATT TGGCAGGGCT 003840 003841 CCCCAGCAGT CCTTGTGAAT CCCTGTGGTA GGATGTTTCA GTTCTCCTGA GTCAGGCTGA AGTGAAAGCT CCTAAGAGAT 003920 003921 ATTCAGAAAG AAGGATGGTC AAGTTCTAGA ACAACAATAG TTGGCCCAGT AATTTTAAAG ATTGTCATTC TACCTAAGCC 004000 004001 TTCATCCTCC AGATAGCACT GTTATGGGCT TAAAATAAGC TTCAAGGGAA ATAATGAATT TCTTTGACAC CGCCAAAAAT 004080 004081 CGGCTGTATA TAAGAATAAC TTGAGAATGG CTTACAATGA GGTAGTCAAA AGCCCAGCTC AGTGCTCAGG AATGTATTTG 004160 004161 TAATTCCTCT TAGACTTGTC GAATGGACTG CAATTTGATA CCTAAGAGTA ATAAAAAATG AGACCATATT TTATGTTAAT 004240 004241 GTTCCCTTCT CTTCCTCTGC CCACAAAAGT GAGGTCAGGG AAGGGGAGAG AAACTTATCC TAAGCACTCC TTATGAGTTG 004320 004321 CTTGTGACAT GATAGCTCTC TCTAAAGTTC ATGCAATCCT CATCGCAACC CCATGAGGGA GATGTTATTG TCTCCATCTT 004400 004401 ATAGATGAGG AAACTGAAGA CAAGACCTTG TCAAAGGTCA CACATTGTAA GAAGTAGAGC TGCATATTCA ACCAAAGCCC 004480 004481 GTGTACCTGG AAAGCTCATT CTCTCTCCCC CTTCTTCCTC TCAAATCAGG CCCTAGCTCC TCCACAATGC TTCGGGCTTC 004560 004561 TACGTTCACT CAGCTTTACA GTAAAATGAT CACAGACCCA TGAGTTCCCT GGAGAGTAGA GTGATGCCTG GGTCAGCTGT 004640 004641 TCCTCTTGTC TGTTCAGCAG GTCCTTTGAG TGGCTTCACA ATCCAGCTGT CAGTGGCAGA AAATAATGCC TCATAAATTA 004720 004721 TTCACCTGGT TCACATTGGA ATCCATTAGC TCTCGGGGCT TGGTGTGGCT GCAGATCATC CACAAGTGCC CCTTGTTCTC 004800 004801 TGCCCCCAAG GAGCTCCTGT CATTGTTTTT AACCAAACAA GTTCAAATAT CTCCACGTCT CTGCTGACTC TGGTCTTTTG 004880 004881 TCTCTAGACT GTACCTTTAT TTCTGAGCTC TGAAATTCTG CAGAAACAGG TGAGTCTATA AAAACATTCT GTGGGAGGCC 004960 004961 AAAAGCTCAG AACAGTTGTG TCTCTCTTTC TCAGTATTAA AAGATCAAGG TTTCCCATGG AAGCCAACCT GATCTGGTAA 005040 005041 TTGGGCCCTT CTATACCCCT CTGAATACTT TTCCAAGGAG GGGGCAGTTC CCACCCCCAT AGTTCCCCTG AGGGTTAAGA 005120 005121 GTCCAGGTGG TGGCCAAGTT GCAAGATTTG GGGCAGCCAT TTTGCCAAGG ATCAGAGATT TGCTGTTGGA GAGGTGAAGT 005200 005201 CGGCTCTGTG CCATCCTGAA AAATCAACTT AGAAAGATAG GTGGACTTCA TCAGATTTGT CAGTCCTTCC TTGTTTTAAA 005280 005281 GAGAAAAATG ATCTCTGCCT TGCTTCAGAT AGGATATGGC TATTTTTTTT CCTTCTTTTT CTAATGTAGC AGTGATGGAA 005360 005361 AACACCAGTC TTTGAAGAAC AAATGGAGGT TCCCAGTGAC ATGAATCCAT TATATTTGAT TTTGGATTGT ATTTTTTAAC 005440 005441 CCCTTTTTAT GGCATAGAAT TCTGGTGCCT TGCTCCCTGG GTTTGTCTCT GTGCTACGAG TAGGCTTTCT TCACATTCTG 005520 005521 GCTTACAGGG GAACACAACT ATTCCACAAG TGGCCTTTAG TGCTCTTTAT AATATGATTT CCTGTAATTT TTAAACTGTA 005600 005601 TGTGTAATTT ATATTCTGGC TCTGTCCAAT ATTTGAACAA CTTTAATAGG TTGATTTCCA TATATATTAT GCAAATAATT 005680 005681 CTTACCTGAT TTTTTATGTT CTATCTTAAA TAAATACTGC ACCACTTATT AATAAATAGA CATTTCAGTG ATT |
Predicted Small Protein
Name | NONHSAT129183_smProtein_3260:3442 |
Length | 61 |
Molecular weight | 6461.7077 |
Aromaticity | 0.05 |
Instability index | 67.0166666667 |
Isoelectric point | 9.50103759766 |
Runs | 11 |
Runs residual | 0.0335992907801 |
Runs probability | 0.0322220616338 |
Amino acid sequence | MKNNPMAMQALLPSTSLPSTPLPSPTLFLLGPAMFGLVHLFGPSLGLIQQQSCLRLHPHL |
Secondary structure | LLLLHHHHHHHLLLLLLLLLLLLLLLLEEELHHHHLLEEELLLLLLHHHHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiii |