NONHSAT129265
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT129265 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6272 nt |
Genomic location |
chr8-:135804263..135810515 |
Exon number |
1 |
Exons |
135804263..135810515 |
Genome context |
|
Sequence |
000001 ATATGTTCTG AAATTAAACT TGAACTTTTT TCTGTGAATT TTGAAGATTT GGTATCTTAT AATTATTTGG TGAGCATTTG 000080
000081 GCATGAATTA TTTAGCTTCT CCCCTGTTTA TGATTTATTT CTCTTGTCAT CGATTTCCAA TAGGAAAATG TTATGGTTCT 000160 000161 AAATGTCTCC TGTAGACTTC AGTAATTGAA AAATGTCAGT CAAGATGGGG GGAATCTGTA ATATATAATA GAGTTTATCT 000240 000241 TTTAGTTATG TTCATTTCCA CTTTTTTTAA TGTGTTTTTT TTTTAGTAAA TGTCAAAAGT GTTACTCAGT GCAACATATT 000320 000321 ATGCAATATT ATAATCAACT AACCTCTTCA TTGATAATGA CTTCATATTG AGAGGCTTTT TAAATCTAGA AATATTCTTG 000400 000401 TTTTAAATTC CAGGTTAAAA TGTAAAGGTA TTTTTATTTT TTTTAATTTT AATTCTTCTC AAAGCTACTA GTACATTATA 000480 000481 AAACAACAAT TTCACATTTA GAATTTTTAT ATGTATATAA ATTAGGATTA TTTTTTAATA TTAGCCTTAA CTTTCTTTAA 000560 000561 CTTTTATGAA AAACAACTAG TCCCAAGGGT ATTTTTACTA TTTAATATAC ATTATTCCTG TGATTCAAAA TCTTAGCAGT 000640 000641 AGAACCTGTT GAGCTACTTA ACTTTCTGTC TTGGGACTAT CCAGGTGCAG TCATAACTGG TTTCAAAGTT GTGACCTTTT 000720 000721 CCTTGCTGGT TTCAAAATCA TTCCTTAAAA AATGTTCAGT ATTTTTCTTT TGTCAAAAAA TAAAAACAGG ATTTGTGGGT 000800 000801 TGTTCTGTTT TTTAAAATTA GTTTGAGAAA CTTCCTTTGC CACTTGTTTT CTGTGCAAAT GTTGTAAGAG CTCAAATTCC 000880 000881 CTGGGGGTAG GGAGGACTTT TATAAGGTTT TTTTGGTTGA AGGGTATAAA AGGCACTTAA AAGGTATACA GTTACTTTTA 000960 000961 TTTCGATATC CCAGTCATTT TGACATTATG ATAGGCTTTC CCCACTTTAT AGGTTATCTG AAAATTTGGT GGGGGGCGGG 001040 001041 TATTTTATTT ATCCTTAATA TAACAAAATT ATTTTCCTAT GTGTAGTCAA TAGCACATAC AAAAAATTAT CTCCTGTTTG 001120 001121 TAGTCAGTAG CACAGTCAGT ATTCACCAAA ATACTGAGTT ATTTTTCAAG TAAAGGTATA AGTATGAATG AGAAACAGTT 001200 001201 TGTGGGTTGG GTATTGTCAG TCCTTCTTTT TCAGATAACT TTCTAAATGG TCATTCAATC TGTAATCTTA AACTTTTTTA 001280 001281 ATGTTATAAA TTCTTCAAAT CAGTATTTGT ATTAAATGCA GTGACCAGAC TATGTCACTG ATACAATGTC ATGATTAGAT 001360 001361 GTGCAGAAGA CTATGTTACA TGGGTGATAA ATGAACTTTT AACATATAGA AATTAATATC AGATTAAACT AAAACATTAA 001440 001441 GCAAAGTTAA TACATGCTTG CATACATATA TATATTTATT TATTAATGAT ATGTGGAGAA TCTTTGTGCT TCATAGTCAC 001520 001521 TAGACCTAAA GTAGAAGCAG TTGTCAAGAA TGTCCAACTG CTATTCATCT TTGTGGCCAA AGTAAATTTC AGATTTTTTT 001600 001601 TTTGTAATGG TTTTCTTTAG TCTCTTTATT AACCCATCAT CATGACAAGT CTGTCAAGTG ACACATGTGA AAAGCAGATG 001680 001681 TCCTTTCTTA TTCCTGGTGC TTCCTAAGGA GGCAGTGCAA TGCAGGAGAA GGAACATTAT TAGAGATAAA GGAAAAAACC 001760 001761 AGAAGTGCTT TCTCCTCTCA CATTCCACTC AACACTTCTC TCACCAAATG TGTGTGGGGA TTTCTCTCCA CCAACAACCA 001840 001841 GCAGTTCTTT ACTGCAGATT CTCCAGTGGA TACCAGCCAG GTGTCCTCTA ATTCAGTTCA ATTCTGACAT TATCTACTGG 001920 001921 GAGATAGTGT CAGATCCCGC AAGTGGAGGG CTCAGTCCTA CAAGACTACC CCTTACTTCA GATGTCAGTC ACAAGCAGTT 002000 002001 AGCGGTTTGT GATTCTGACC AACTGGCTAG AGGTCCCCCT CCTCAAGTGT GATTAATTTG CTAGAGCAGC TCACAGAATT 002080 002081 CAGGGAAACA CTTTATTTAC ATTTACCCAT TTATTATAAA GGATATTATG AAGGATACAC ATGAACTGCC AGAAAGACAA 002160 002161 GGAGCATAGG CAAGATACTG AGAAGGGTCA CGGAGCTTCT GTGCCTTCTC CAGGTGCACC ACCCTCTGGG AATAGTCAGT 002240 002241 TCATGTGTTC AGCTGTCTCG AAGCTCATTC GAACCCTGTC CTTCTGAGTT TCTGTGGAGG CTTCATTACG TTAAGGTTCA 002320 002321 GAAATCAATA CCCCAAAATA TGGGGCTTTG ACATGCTGAA TTAAAGAAGC AGCCTCAAGG CCTCTTGGCC TTCTCCAGCT 002400 002401 CTCCTCACCC AAATCCTGTC TCTCCCAAAG CACAAGATGA GGCTGTTCAC CAAAGTTCCC TTATTTACCT AGAAACTGGA 002480 002481 CCTTAAAGAG GAACACAGTT GCCTGCGATT CCATCCCTGT AATTTTATTA ACCAGAGATT AAAACTTATA TCACAGAGGA 002560 002561 AGAGACTAAA AATTAAACAC CACACCTGGA GCCCAGATGA CCTGTCCCAA TCTATTATCT GTTCTCCAGT CCCATTTAGT 002640 002641 TCCCAAAGGG AATCATTTAC AAACCATTGT CTGATCTTCC GGCCCATTTA TTTACAGCTC CCCCTCTTTC CCCAATGAAA 002720 002721 ATGATACTTA AGTGTCAGCC ATCTATCGGC TCTTTGAGTT TTCACATTTT GTATGACTCC TGTGCACACA CATGCATGTA 002800 002801 ATAACTGTTA TACTTGTTAA CTTTTTTTCA TTATAGGGGT ATCCACCATG ATTATATATG ATGGGGAGGA AAGGGATTAC 002880 002881 TCCATTTCTG CCCCTGCAGT CTGTAGGCAT GATTGATTAC ATCATTGGTC GCCGGTGATT AACTCAGTCT CCAAGCCCTG 002960 002961 TCGTGTCCCT GGAGGTTGGA GGGTGGCACT GAAAGCTCCA ACCATCTCAT CATGCTTTGA TCTTTCCGAT GACCAGACCC 003040 003041 CACCCTGAAG CTATCTACGG GTCCCCAGCA ACATTCATTT CGTTATCATA CAAATGACAT TCTTACAATT TCAGAGATTC 003120 003121 CAAGGGCTTT AGGAAATGGA GATGAAGAGC AAATATATAT TTCACAATAT CACAAACATA CCCTTGGGAA TTAGACCTCT 003200 003201 GATCTAATCT AGGCTCCCTC ACTTGCCATT TTTGTGACCT TGAACAAGTT GTTCATCTTT TCTGGATAGT TCTCTGTTAA 003280 003281 AAAAATTAAA ATAAAAAAAT GGTGGCTATC AGGTTGTTAG GAGGACTAGA TAAGAGAACT ATGTGAAGGA CCCTGCACAG 003360 003361 TGCTAGCAAC AAAGTTGTTT AGTAAGTGCT ATTTCAATTT ATTTTGCTTC CAAGCTCATG TGAGCTCCCT CAGTGTGTAC 003440 003441 CACCAAATCA CATGATGTGT ATCCCAGTCA AATCTTAAAG GTCATCCACC TTGAATCTTT AAGTTAATTA ACGTGTGTTT 003520 003521 TTAAAACTGC ATTATAAGAA CGTTAGGGTT TTTGTTTTGA TCCTATGGAA GTTAAATTTT TTACACAAGC ATTCAACTGT 003600 003601 TTAGCTTCAA ACTGAACAGA TAAATAGTCT GTATTATTTC ATTATGTATT AAAAAATGAT TAAGCCTGCC TCAGGCAGTT 003680 003681 CAGGCAAAGC AGGTAAAAGA TTATCAAGGA GTAACATTAG AAAACACTAA TCAGAGTGCC TAAAAAGCTT TATGCGGTCC 003760 003761 AGGTTGTACA GGGATGTTGG AACAGTAAAA CAAACAAAAC ATTACAAGGT ATGAAGCGTT CGAGATAGGT AGAATAGAGC 003840 003841 AGGTTATATT AGAGAAGTCT CTTCTAAAAT TGTGTTGGCT AGCCTGGGAT TTGAACTTAT ACCGTGTATG TATGTCCATG 003920 003921 TGTAACAGGT TGAACATGCA AGAAGCAGTG TTCATAAAAG GTGGCAAACT TGTTTTACTT GTTTCTCAGT CTTTTCAGAT 004000 004001 CAGTACTTAT AAAACACTGA TATTTACAGT AAATATCTTA TATTAAATAT TAGCTAACCC TATTAAATTG TGTGTCCTTG 004080 004081 TGCTGCAGTC ATTTAATGAC CTCATTCTTT GGTAAGTTGG CATGTGATTT GAGATAGCTC TAAGTGCTAA TGGATTGTTT 004160 004161 GAAGGGGTTA AAGGCAAAAC CAGAAAGAGA AAACTATTTT TAGGAAAAAG CGATCATACA ACAGGCCTTA AATAGAAGAA 004240 004241 ATGAGATATC TCTATCTTTA CTATGTAACC TTTAATTCCT TACACATTTT GACTTCATAT TTTTTGTATG TAAATGAGAA 004320 004321 TGTTATAGTC TTGTAAATTC CTTTTCCTCT GTGACTACAT TCAGTTATTT ATTTTATTGT GTGTTTGTGC ATGTCGGTAG 004400 004401 AGCACAGTAT TTAGTAGAAT GAGTTATTGG TTAAACCACC TGGATTCATT TGTAAAATGG GGCCACCTGT CTCTTAAATT 004480 004481 GTAATGAGGA TTTGATTAGA TAATCTAGAT AAATCACTTA GCACAAGAGT CTCCAGCCCC CGGACTCTTG ACTGGTACTG 004560 004561 GTCTGTGGCC TGTTAGGCAC TGGGCTGCAC AGCAGGAGGT GAGCAGGGAG CAAGCTAGCA CTAGGGCCCA AGCTCCGCCT 004640 004641 CCTGTCGGAT CAGTGGCAGC ATTAGATACT CATAGGAGCA CAGACCCTGT TGTGAACCGT GCGTGTGAGG GATCTAGGTT 004720 004721 TCGTGCTCCT TACAAGAATC TAATTAATGC CCGATGAGTT GAGGTGGAAC AGTTTCTTCC CAAAACCGTC TCAGGAAACC 004800 004801 TGTCCCTGGT GCCAAAATTT GGGGGACCTC TGACGTAGCA CACTATCTGG CACATACCAA GCACTCAGAA AATATCCCAT 004880 004881 TTCTCAAAAC TCAGTTCCAG TGTCAAGTCT TAATAGTATA TTGATCTTGG AACTCCAAGG TAGTTGGTCC TCTCTTTGTG 004960 004961 CCATAAATGT GCCTTGTACT CAGTAGTGCT AAATTGCTAT CAACTAGTGC TAAATGTACT ACTAATTCAT CTGTGTGTCC 005040 005041 ACTTCCCTTC TTAGATTGTG AGCCCCTTGA GGACAGAGAT GGGTTTACTC ATATTTATAA ATTCATTGGC ATGATAAATA 005120 005121 TTTGCTGAAA GAATAAAATT GTATTCTTAT GTTTTAAGCA GGGTCCCCTC CACCTCTGAG TGGAAGATGG TCTGGGAGCA 005200 005201 AAGGTGACAG GTCTTCTAAA AAATCTGGCC ACATTCTCAA CCCACCACAC CCCCGCTTTT TTAAACAGCT ATTTAATTGC 005280 005281 CATTGTAATC CTAAGGATTG GATCAATTTT TCACTTCCCT TTTTCACACT TTTTTCCTTT TACTAAGAAA ATAAAGTAAT 005360 005361 AAAGTGACTG CCAAATGGAG AAAACTGTCC ACTAAATATG AATTAATAAG TGCTATTATC AGAAATTGTG TAAAAGCAAC 005440 005441 ATAATGGCAC TATAAAAAGG TATTATCTTA GAATCAAAAA CCTTGGGTTT ATATTATAGC CCTGCTACTT TCTAGTCATA 005520 005521 TGACAGTGAT CAAGCTATAT TACCTCTTTG GCTTGACAAA ATAGGGGTCA TCTCTATTTC TGGCTTGTTA TGATTGATGT 005600 005601 GAAATATTCA TACAAACTAC CACTGTGCCT GGTAAGTAGA AGACACTCAA ATATGTCTTG GAGTTACAGT TAATACTGTA 005680 005681 TCGTTTAAAT TTGAGAAAAA CCAACTTTAA AAAATCACAT AGATACAGTT GTTTACTGCT AGAAATTTTA TTTAAATTAG 005760 005761 TTGATACTCT TGGTTAGGTA ATGAAAAACA ATGGTTTTAT CTCCATTATG CTGTGATAGG GAAGAGTAAC ACAGTTCAAA 005840 005841 TGGCAAAGGC ATACCTGACA ATTAAAATGC ATAGTTAAAG GCTAATACTT CCTGAACACA AGAAGACAAG TCTCTACTTG 005920 005921 ATACTACTCT CCACAGTTAA ATCATTGATA CTTTGTGCCA TACAGTGAAA ACAGAACCAT CTAGGTGTTC ACGGATTGTA 006000 006001 TTTTTCCTTA TGAAAGGTAG AAGGTTAGAG AAAATTATTC CCAATACAAT TAATACAAAT AAAATTGGTT ATTAGGTGCC 006080 006081 TTTTAATTAG GCAGTAAGGG CATATGAAGC TTCATTACCT ATGAGAATTT TGTCAAAATT ATTTCCCAGT TACCATGTTT 006160 006161 TAAAACAGCC TCTCAGAATT CCCCACTTCT AATTTCTCCT TTCTATTCTA CCAATTTTAC TCCATACCTT TTTGCTAAAT 006240 006241 AAACATTTTC TTCCTAAAAA AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT129265_smProtein_3911:4045 |
Length | 45 |
Molecular weight | 5044.0274 |
Aromaticity | 0.113636363636 |
Instability index | 46.2363636364 |
Isoelectric point | 9.51531982422 |
Runs | 9 |
Runs residual | 0.0414438502674 |
Runs probability | 0.042042042042 |
Amino acid sequence | MSMCNRLNMQEAVFIKGGKLVLLVSQSFQISTYKTLIFTVNILY |
Secondary structure | LLHHHHLLHHHHHHHLLLEEEEEEELLEEEEEEEEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTToo |