NONHSAT131102
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131102 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2271 nt |
Genomic location |
chr9+:37865023..37867293 |
Exon number |
1 |
Exons |
37865023..37867293 |
Genome context |
|
Sequence |
000001 AGTTTGTAAA GTATGGTAAG CTGGCCTGTT ATTTGTTTAG TATCTTCTGG ATTTTTTTTT TTTAATTATA GAGCTAGCTT 000080
000081 ACCGTGTGTA TCATGTAAAA AAAATTCATA AGATTAACAA TTTCCATGAG AATATCATAA ACTCAGGGCA CACATTCTGG 000160 000161 CCATTCCTGA CTAAAAAACT TCAAGCAGAA TAAGCAGCTA TAAAATAGAA AAGAAAAATT AAGGATAAAC GGCATTGTGA 000240 000241 AAAAAAACCG AGCCACACAG ATGAGAATTA AAAATTAACA GCCAGCAAAC TCAAAAGAAC CTTTGTCCTC CTTGAGATAT 000320 000321 GGTGATGATC AAAAAGTTAG CAAGGAATAT TAATCAAGGA ATTAAAGGGC ATTAGGAATG CTATAGTATT GGAAGAAATT 000400 000401 ACATCTTAAC ATTTCAAAGC CCCATTTCAC TTAAGAGTAA AATCTAATCT GATGTTTTTT ACTCTGAATT TTATTCAGTA 000480 000481 ATTTTTATTC ATAATTCATG ATAATTGGTA ATGTAGTATA ATTGTTAGTA AATGCAGTAC AAATTGTTCT ACTGTTTTAA 000560 000561 AAAGTTTTCC GCAGAACAGT GCATTTATGG CAATGCTATG TTTAATGAGT TAGGGACATC AAATATATAG TAGTTCCTTA 000640 000641 TTTTCAGTTG TGAAAATGAA ATGGCTAAAG CAGAAGAGAC GTCTATTTTA GTCTTTTAAA AATGTGTGTG GGTGGTCTTT 000720 000721 TTTCCTCAGA AGCCCAAAGC ACATGTATAT TTTGTTATTT CTCCTTGCTA TATTCCTGAG ACTATACTAA AAACTTTAAG 000800 000801 AAAAGGAACA AGAAAAAGGT AAATTCATGT GTTCCCCACT GCTGTGTCTA GAACCAAGAT CACATTATAT CATTGTTAAA 000880 000881 ATTGTGTTAT CTAGAAAGTG CAATATAGGG AAAACACTCT AAGAATCTTT TAAAAGCCTA GTGTTTCCCT TATTTGTCAG 000960 000961 AATATGTGGT AGTGGCATCC ATAAGTATCT TTTAACTTGC ATTTAGCAGG ACAAATAGTG TGATACTTAT ACTGATGACA 001040 001041 ATCATCCCCA TTTAATGACC AGCAGTCACT GAGCGCTGTG AAAATTCACT CAGTGATACC CCGTGTTGGT CTTGAAGGAA 001120 001121 ACCGTACATA TGAATTTTTG GATAGCTAAT GTATATCTCT CAAGTGCCAA CATTTAAAAC TTGTAATTAT TTTTGATGTG 001200 001201 AGTATTTCAG GTATGTTAGT ATACCTTCCT GCCTTCTTCT TAAACATCAT GCTCAGTATA ATTCACATTT TCATGATGAA 001280 001281 AAGTTAAAGT TATATTCATA ATGTATTATT ATAAGTATCC AGCTCTGATG TATGTAAAAC ACTTCATAAA ATGTAAAGGG 001360 001361 CTATAACAAA TATGTTATAA AGTGATTCTC TCAGCCCTGA GGTATACAGA ATCATTTGCC TCAGACTGCT GTTGGATTTT 001440 001441 AAAATTTTTA AAATATCTGC TAAGTAATTT GCTATGTCTT CTCCCACACT ATCAATATGC CTGCTTCTAA CAGGCTCCCC 001520 001521 ACTTTCTTCT AATGTGCTGT TATGAGCTTT GGACATGAGA TAACCGTGCC TGTTCAGAGT GTCTACAGTA AGAGCTGGAC 001600 001601 AAACTCTGGG GGGACACAGT CTTTGAGACA GCTCTTTTGG TTGCTTTCCA CTTTTCTGAA AGGTTCACAG TAACCTTCTA 001680 001681 GATAATAGAA ACTCCCAGTT AAAGCCTAGG CTAGCAATTT TTTTTAGTTG CAACTAAGTA AGATATACTA CAAACTAAGG 001760 001761 ATGCTGCTAG ACTAAGGAAT AAACAGCAAG GTACCAAAGT ACAGCAAAGC AACAACAAAG GCTCTGTATT TGCAGAGGGG 001840 001841 TCTATCATGC TTTTAAGAAA AAAGAAGAGT ACAGGAAAAA AATTCAGATA GACATAAGAG TATTTTGGAT GCCATTAAAC 001920 001921 TTTGTCAATA ACCATTAAAA CATAGGCTTA AATTATCACG TATTGTTACA AAGACACAGT TTTGTCTCAT TATAAAATAA 002000 002001 GATTATATGA AATTTATATT CTAGAAATGA TTCCAAATCA TGTCCTAAGA ATTTCTCCCA TTCAAATGAT AATGGAAATT 002080 002081 ACTGTCAAAA GGAAAATCTC AAAGTTACCG TTACGCTGCT CTCTTGTAAA TGAACTAGGG ATAAAGATAT GGGTTTTATC 002160 002161 AAAAGCCCTA AGGAATATAT CTCACATTCA CCTCCTATAT GTATGTGTAT ATATAAATGC CACTATAAAT GAAAATGTCA 002240 002241 CCCAGAGATA ATAAAATAAT TTTTAAAGTT T |
Predicted Small Protein
Name | NONHSAT131102_smProtein_1541:1672 |
Length | 44 |
Molecular weight | 4834.4217 |
Aromaticity | 0.139534883721 |
Instability index | 59.4860465116 |
Isoelectric point | 9.69720458984 |
Runs | 5 |
Runs residual | 0.0410243010191 |
Runs probability | 0.0354354354354 |
Amino acid sequence | MSFGHEITVPVQSVYSKSWTNSGGTQSLRQLFWLLSTFLKGSQ |
Secondary structure | LLLLEEEEEEEEEEEEELLLLLLHHHHHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |