NONHSAT131495
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131495 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1860 nt |
Genomic location |
chr9-:65487273..65494386 |
Exon number |
2 |
Exons |
65487273..65488372,65493627..65494386 |
Genome context |
|
Sequence |
000001 gctgccattg cggattttgc cagcttcagc cagtttagtc ctaagaagga acttctgacc ccagacatcc tgttttctaa 000080
000081 aactaagcag ttaaagctga atgggaattt agctctgtca cataggcatt tgttgggcaa caaAAGCAGG GTAGGGCTCC 000160 000161 AGCTAAGCCA CGTAGGCACT ACGATGGGCA ACAGAAAGGT TGGTTTCTGG GCAATTCAGA GAAACCAAGG ACAGCTACCC 000240 000241 CCAGAACTCA GAGTAGCCAA CTGGGCTGCT CACAGGAGAT GCCTTAACTG AAAGGTGATC AGACTCCACA GGAGACCCAG 000320 000321 AGAAGATGTG GAGGGAGCTC AGAGGCTGTC CTGGAGGAGA CGTGGAGACA GCTCAGAGGC TGTCCCAGAG AAGACGTGGA 000400 000401 AAGAGCTCAG AGGCTGTCCC AGAGAAGACG TGGAGAGCTC AGAGGATGTC CCAGAGAAGA CGTGGAGAGA GTTCAGAGGC 000480 000481 TGTCCCGGAG AAGACGTGGA AAGAGCTCAG AAACTCAGAG ACTGTCCCGG AGAAGACATG GAAACAGCTC AGAGGCTGTC 000560 000561 TGCAAGAAGA CGTGCAGAGA GTTCAGAGGC TGTCCCGGAG AAGACATGGA GAGAGCTCAA AGGCTGTCCA CAAGAAGATG 000640 000641 TGGAGAGAGT TCAGAGGCTG TCGTTACTGC TGCACTTGGC TGTTTTTCTT TGGATAATTA TTGCAATCAA TTTTAGTAAT 000720 000721 TCAGGTGTTA AATCACAGTC AAGCACCTAT TTACCTAGTG GTAAAATCCT TAAGTAAGTC ATATTTGGTT GGGAAGATCA 000800 000801 AAGAAATCAC CCAGTCTCCC ACATCCGAAA TTGTGCAGTC TGGACTGTCA GGAACAAAAG TGAAAGAGAG ACGTCATCAA 000880 000881 ggccgggcgc ggtggctcat gcctgtaatc ccagcacttt ggaaggccaa ggagggcgga tcatgaggtc aggagttcaa 000960 000961 gaccagcctg gccaatatgg tgaaaccctg tctgtctcta ctaaaaataa aaaaattagc caggcgtggt ggcaggcacc 001040 001041 tgtaatccca gctacttggg aggctgaggc agaagaatca cttgaacctg agaggcagag gttgcaataa gccaagattg 001120 001121 tgccattgca ctccagcctg ggagacaaag cgagactcca tctcaaaaaa aaaaaaaaaa aaaagaatga ctaaaattaa 001200 001201 gaagattgat gattccaaat attggtaaag atgtagaaca actagaactc ccacatattg ctgatgaaaa tgaagaataa 001280 001281 tacattactt tggaaaatac tttggtactg atttaccata tgaccccaaa atctcacttg tagaaattta tacaggaaaa 001360 001361 atgaaaacat atgctcacag aaagcttgta tacacatgct tatggcaata aatttattta tagttgccta tcaacaagtg 001440 001441 atgaacaaat atattttagt atcttgatac tactttctag ctagaaaagg aatactacta agcaaaaata gaggatgaag 001520 001521 tagtaatata cataacatat atgaatttaa aaacaccatg ctgattgaaa gaaaacaatt atcaaataca cagtgtaata 001600 001601 ttctattcac agaaagtttg aaaacaaaaa actatagtct ctgaaagaaa accattggtt gcaggaaggt ggggattcat 001680 001681 tggccacaaa agggactgag gaaacttttt atgggtaatg gaaatatttt atatcttgat ggtggcacca attatacaac 001760 001761 tgtatgtaca catttgtcaa aattctaatc gtattataca caacatgagt gactttaact gtctataaat tatatctcaa 001840 001841 taaaattggt cttaaaaGAT |
Predicted Small Protein
Name | NONHSAT131495_smProtein_1370:1483 |
Length | 38 |
Molecular weight | 4252.8114 |
Aromaticity | 0.162162162162 |
Instability index | 54.4945945946 |
Isoelectric point | 4.64935302734 |
Runs | 7 |
Runs residual | 0.009422266303 |
Runs probability | 0.03549347667 |
Amino acid sequence | MLTESLYTHAYGNKFIYSCLSTSDEQIYFSILILLSS |
Secondary structure | LLLHHHHHHHHLLLEEEELLLLLHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |