NONHSAT131507

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT131507

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1393 nt

Genomic location

chr9-:65696702..65725786

Exon number

7

Exons

65696702..65697375,65697732..65697873,65705306..65705431,65705959..65706118,65707472..65707645,65707797..65707847,65725721..65725786

Genome context

Sequence
000001 ATAAAGAGAT GTGATTTTTT AAAAAACTCC CTTTTTATGA AATTATTTTC TCTACTAAAC TGCTATCTTT GGAAACCCAA 000080
000081 CTCACCATTA AATTGCAGCG TCTTAAATTG TACTCTCACT CTTTTCGTGT TCGTTTTTGC CATCGAGGAC ATCAACAGGG 000160
000161 GCCCGCTGCT CTTACTCTAC ATGTCTTTGG GGTATCACGT CTACAATACC TACCACATTA ATCAGAGGAC TTTGGAGGGC 000240
000241 CCTCTGTTTT GGCTGTCAGG AGGGGCCGAG AACCTTCCCA ATTATACATG TCCATTTGAT CCTTTGCCTA ATGATGAAGG 000320
000321 ACAGTTTCCA TCTCTGTATC AGATGGTCCC AAGGAATCAT CTTTGCCTCT TGGCATGGTG AAGCTGTTGC AGCATTTTAG 000400
000401 CTAGATCTGG TAGGGCTGCT TGTCTCGGAT GACATAAAAG GTGGGCATTT TGTTACCACC TCCCAGTGGG ACTTTATCAC 000480
000481 ACATGGGGGA AGTTTCATAC TTAATCCATT CCATGGGACT CTCACTTTTT CAAAGCAGAA CAGTGAGATG CCTGGCTTCC 000560
000561 AGCATTTTGT TCAGACAAAT GAATGTGCAA AATGCCCAGA CAACCAGTAT TCAGTGAGAG CGATCACTGC CTCACAGAGT 000640
000641 TGTGACCTTC CTGGACTTTG AAGATGCACT GGGGACAGCA CTGGCCAGCA TAGCTCTCTG TTTCTCTGTC CTCACTGCCA 000720
000721 TGGTTCTTAT GATCTTTGTG AAGCACATAC ACACACTCAT AGTCAAGACT CTCAGCGACA TCTCTCTGTC TGTTTTCTTC 000800
000801 TGCTCCTTGC TCTTCACTGG CTGTACAAAC ACAGTCACTT GTAACCTCTG ACAGACAACA TTTGGAATCA TTTTTACTGT 000880
000881 GGTTGTTTCA ACTGCGTTAG CTAAAACTAT CACTGTGCTT ATAGCCTGTA AGGCTACAGC ATCAGAGAGA AAGCCAAAGT 000960
000961 GGTTTTGGGG ACCGGGAGTA TTTAGCACAG TTATTTTCAT CTGTTTCCTT ATCCAAGTAA CTCTCTGGAA TTTGGCATGG 001040
001041 GATCAAAGAG TGCCATCAGG ACTCTCAATG ATGAGGTATT CTTTGCCTTC CACTCTGTTC TGGGATTCTT GACCTTTTTG 001120
001121 GCACTGGGGA GCTTCATCTT GGCTTTCCTG GCCAGGAGCC TGCCTGACAC CTTCAATGAA GCCAAGTTCT TGATGTTCAG 001200
001201 CATGCTGATG TTATGTACTG TTTGAATTAC CTTCCATACT GTGTAACATA GCACCAAAGG GAAGGTCATG GTTGCCTTGG 001280
001281 AAATATTCTC CACCTTGACT TCCAGTGCTG AGTGCTAGGT GGTATCTTTG CTCCCAGAGG CCGTATTATT CTAATAAAAC 001360
001361 CAGATAAGAA TACTCTTGGA GAGTTAAGGA AAA
[back to top]

Predicted Small Protein

Name NONHSAT131507_smProtein_482:616
Length 45
Molecular weight 4947.6936
Aromaticity 0.0681818181818
Instability index 42.7363636364
Isoelectric point 9.49310302734
Runs 7
Runs residual 0.00401069518717
Runs probability 0.0323390617509
Amino acid sequence MGEVSYLIHSMGLSLFQSRTVRCLASSILFRQMNVQNAQTTSIQ
Secondary structure LLEEEEEELLLLLLHHHLHHHHHHHHHHHHHHHHHHHHHLLLLL
PRMN -
PiMo -