NONHSAT134943
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT134943 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3127 nt |
Genomic location |
chr9+:131092691..131096347 |
Exon number |
2 |
Exons |
131092691..131095222,131095753..131096347 |
Genome context |
|
Sequence |
000001 cgtaggtaat ttttaatttt ctgccagcta ctttaatagc aaaaagaaat taattttttt gctattaaaa ttaaggtgga 000080
000081 atttttttgt ttgttttttt gagatagagt ctcactctgt tgcccaggct ggagtgcaat ggtgccatct cagctcactg 000160 000161 caacctctgc cttctgggat caagcaattc tcttgtctca gcctcccaag tagctgggat tacaggcacc cgccaccatg 000240 000241 cctggctaat ttttgaccat attggtcagg ctggccttga gctcctcagg tgatccgccc gcctcggcct cccaaagtgc 000320 000321 tgggattgta accatgagtc accgtgcctg gctagaattg attttaaata tgcatcttgt ttagcccaat atatccaaag 000400 000401 tattatttca acaagtaatc aattttcttt tttttttttt ttttgagacg aagtctcact ctgtagccca ggctggagtg 000480 000481 cagtggcgcg atctcggctc gctgcaagct ccgcctcccg ggcttacgcc attctcctgc ctcagcctcc cgagtagctg 000560 000561 ggactacagg cgcccgccgc cacgcccgga gaattttttg tatttttagt agagacggag tttcaccgtg ttagccagga 000640 000641 tggtcttgat ctcctgacct catgatccac ctgcctcagc ctcccaaagt gctaggatta caggcgtgag ccaccgcgcc 000720 000721 cggccagtat ttttaaatca ttgagagttt tacatttttt tcatactaag catttgaagt ctcgtgtgta ttttatatga 000800 000801 tcagcacatc tcgcttggac aactttcttg gccacatgtg gcaagcggct gccatactgg acagtgtagg tctaggaGAC 000880 000881 ATTAATACTC ACATCCACTA AACATCAAGG TACAGTTATT TTGAGTGCCA CTAAGAGGTG AATGATGTTT CCAGAGACCA 000960 000961 TAACATGAAC CCACTTGGTC TGTAGGTTAG GGGTGGCCTC TCTGTGGtgg ggggaaggga tgggggacag gggacactta 001040 001041 acccaggtca tgaaggataa gtaggagtta ccacagtgaa gatggaggta gtgggagaga acaccccaag ctgggagcaa 001120 001121 gttatgcTAG GATCAGGGTC TTTGGGGCTT CAttatttat ttttagagac aatgtcttgc ttgagtgcag tggtatagtc 001200 001201 atagctccct gtaacctcaa actcctgggc tcaagcatcc tcctgtccca agcctcctga gtagctggga ctataggcac 001280 001281 acaccaccac acctgactaa tttttgtatt ttttttgttc tgggtttttt ttttctttga gacagagtct ctgtcaccca 001360 001361 ggcaggagtg cagtggtgca atcttggctc actgcaacct ccgcctcctg ggttcaagtg attctcctgt ctcagcctcc 001440 001441 cgagtagctg ggactacagg tgtgcaccac cacacccggc taatttttgt attttttagt agagacaggg tttcaccgta 001520 001521 ttggtcaggc tggtgttgaa ctcctgatct caggtgatcc gcccacctta gcctcccaaa gtgctgggat ttacaggcat 001600 001601 gagcctcggc ccctggccAG TCGCCAGAGT TTTCTAGTAG GTATGAGTTA GGTGAGAGTT GTGACGGTGT CAGAGACAGA 001680 001681 CTGGCAAATC GGGCCCTGGG AACCATCAGG AAGGGTTCTA GGGGAGGCTC ATGGTTGTCA GAGGGTCTCC CCAGACACCC 001760 001761 GAGCACCCAC CCGCTTCGTG GATGATGAGG AGCTAGCGTA TGTGATTCAG CGGTACCGGG AGGTGCACGA CATGCTTCAC 001840 001841 ACCCTGCTGG GGATGCCCAC CAACATCCTG GGTGAGTGCC CCCAACCCTG ATGGCCTGTC TCCCTGGGGT GGCTTCAGGG 001920 001921 CCAGGGCAGG GCTTGCCTAT CTCCACCACC CTCTGCATCA CCTGGCTTGG TGCCTCAATT TCTGCTTTAC CTGAACATCT 002000 002001 TAGTAGCATC TTTGCCACAT GTCCCCCTTC TTTCTCCCAC TGCCCCTCAG GGCTCCTGCA CTAATGGAGC AGCAGAGCCC 002080 002081 ATCTTCAAGG CTCCTGGTGT CTTTTTAGGC TTTAGCTGCC TCCCTGCTCT GAAACCTCAG TAGCTCCCTA AGGCCTGCAG 002160 002161 GAACCATCCT GGAGTGTTTA GCCTGGCTTA TGGGGTCATG GGGTCCTCTG CGCCCTGACC CCAGGCTTCC TTTCCATCCC 002240 002241 CTACTCCCTT CTGTTCACTC TTGGGCTCTC TCCTGTACTC CAAGCCAAGT GCCCCAGGGC CCAGCACAGG CCAGGACTGG 002320 002321 GCACAGCTGA CCCCGTAGAG ATTAGGGAGG AACAGTGCCT CTCTTTACCC TGCTGTGAGC ACCACTGGCC TTTCCTTCAG 002400 002401 ATAGCTTGTT CACCTCCCAA CACATCCCTC ACCCACAGGG GAGATCGTGG TGAAATGGTT TGAGGCTGTC CAGACTGGCC 002480 002481 TGCCCATGTG CATCCTGGGT GCATTCTTTG GACCGATCCG ACTTGGCGCT CAGAGCCTGC AAGTGCTGGT CTCGGAGTTG 002560 002561 ATCCCATGGG CCGTTCAGAA CGGGCGCAGA GCCCCATGTG TCCTCAACCT GTACTATGAG CGGCGCTGGG AGCAGTCCCT 002640 002641 GAGGGCTCTG CGGGAGGAGC TGGGCATTAC AGCACCACCC ATGCACGTCC AGGGCTTGGC CTGAGCTCCT GAGCCAGCGG 002720 002721 GGCCTGGCCT ACCTCCCCCA TCCCCTGCTT CCCTTGGAGG CAGAGGGCTC CCTTGACTAC CTTTGTTCCT CTTCTTTGAA 002800 002801 CACTGACCCT TGGACAACAT TTATCATAAT TTGTCATAAC CACTGCTGAG TGGCCTTGAG GACGAACCCC GCAGGGAGCA 002880 002881 AGCAGTACAG TGGCATTCCC AGGGGGACCA GCAGCTACCC AAGGAGAACC ATGCATGAAC AGTATCAGTC GTCTGGGCTC 002960 002961 ATGCTGGGAT GTCGCAGTGC TCCTGTTGCA ACTCCTCCCA GCCAGCCAGG TTTGCTGGGG GCCAGGCTGG GTGTCCTCAC 003040 003041 AGGAGTGAGG GCTACACCCA ATTCCAAAAG CCTGAGAAGA GAGAAGTGGA GGGGGAGGCG AGTGTGTGAA TAAAGGCTCC 003120 003121 CATCAGG |
Predicted Small Protein
Name | NONHSAT134943_smProtein_2930:3112 |
Length | 61 |
Molecular weight | 6548.5273 |
Aromaticity | 0.0333333333333 |
Instability index | 76.5083333333 |
Isoelectric point | 11.2363891602 |
Runs | 11 |
Runs residual | 0.0335992907801 |
Runs probability | 0.0174238409533 |
Amino acid sequence | MHEQYQSSGLMLGCRSAPVATPPSQPGLLGARLGVLTGVRATPNSKSLRREKWRGRRVCE |
Secondary structure | LLLEELLLLEEELLLLLLLLLLLLLLLLLLLEEEEEEEEEELLLLLLHHHHHHLLLEELL |
PRMN | - |
PiMo | - |