NONHSAT137282
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT137282 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1677 nt |
Genomic location |
chrX+:57148042..57154636 |
Exon number |
2 |
Exons |
57148042..57148400,57153319..57154636 |
Genome context |
|
Sequence |
000001 CGGCTCTCCT CTCCACCAGG CTCCCACGCC CACCACACAG CCTGTAGCCC CGGCGGAGCT ATGGGCTCTG ACTCCGCCTC 000080
000081 TTTCCAAATC CGGAGTAGTT CGTGCCACAG TCGTCCTCGG AACCCTGTGG CCCCTTCCTC ACCCGTTTCA GGGCCACTTG 000160 000161 GTTCCCACCT CCACCTTCTT AGTCTGCCTG CCCTGCTTTC CATCTTCTTG GAATTCGCCT TGCTGCCGcc ccgcgcccac 000240 000241 ccccgcgccc acccctgccc ctgcaccgtc ccatgcccTT ATGGATTTAT TCTTTACACG TAAATATGTC TTTCCTCTTT 000320 000321 TTGAAAGGAT TTGGAGTTGG AACAGAGAAA TTCACTATGa tgatgctata tctttatatg acctttggaa tatctgtaat 000400 000401 catcctgagg gcaatactta tgtaatgaag atggaagaag agagaatatg aatactccgt gcactttgat cttatcgttt 000480 000481 agctgctgat cataccatcc ctggagtcct acttctgact ccaagttatg aggtaacaaa tttctttata gttaaagcaa 000560 000561 tttgattctg ggttttctgt tacttgcagt tgaaggcatc ttaaatgGCT TAGCGTTCCC AGACTTAAAT GATATAGTAT 000640 000641 CCCTAGACAA TACCGTTATA CTTTTAAGTT ATATGAAACA ATACATTCTC AGGCACTCAT TCATACAACC AGCTCCCATA 000720 000721 TCAGGAAATG GGACCTTACT TCCAGACTTA AAAAATCCAG TATTCAGTTG CAGATAAGGA ATAAGGAGCT ATCTAAAAAA 000800 000801 CAAGCATGAG GTAAAAAGGC ATCATTCTAA TTTGCACTAT AAGAAAAAAT ATACCAGGAT TAGCAAATAA CTCCCTAAAT 000880 000881 AAATGCTGTC AGCAAAGTGA TGAGCCTCTT ATATTTTCCT CATAGGAAGA GGTAGGCTTC CGGACTCCAG TCTCTCCACC 000960 000961 TCACATCTAT TTTCCATATA CTTTAGATTT CTTTGTCTTA AGGAGGTGAT CCTGATATTC AATCTTATGA GAATAAAAAA 001040 001041 TAACATTCTA ATCACTTATT TTTTAAATGT CATGCATTAA TATTAGTTAA GACCATCTTT CAAAATTACC AAAAATTAGT 001120 001121 ATGGTTTACT GCAATCTTTA TGACAATGAA AAGATCTATA ATGAATGAAA TAGACCTTTC TCTATCTCAT TTCCTTTTTC 001200 001201 TCCTTGCCAC CTCTCAGGAT GTCCCAGTGT TCTCACGTTC CACCTTCAAT CACACTTAAC CAATGTTAAA TCCCTGGTAT 001280 001281 GTATTCTTCC AAACCATTTT CTATGTTATT ACAACAATAT ATAAATATAA ACGTAAATAT AGGAATTTGG AAGTCCTTCT 001360 001361 CACTTTTTAA CGTAAGTGGG ATCATACTCT TTACATTTGT GTGCAATGAC ACATCTATAT ATATTTCTAA AACAtcttct 001440 001441 ttataattgt ataatatttc aaatgataca taaacacaat gtattcaaaa gttctggtat tgatagacat tcaagatttt 001520 001521 cccccagcta tttttgctat ttcaaacaat gctgTGATAA CAAgtgaatg caatccaatt gtgacatttc tcattccatc 001600 001601 tattttgagg gttgatggtg cctattttgc tgatgaggta ggtatctttg tcttttctca atgttgccat attcttc |
Predicted Small Protein
Name | NONHSAT137282_smProtein_272:424 |
Length | 51 |
Molecular weight | 5870.2557 |
Aromaticity | 0.18 |
Instability index | 48.558 |
Isoelectric point | 9.39898681641 |
Runs | 9 |
Runs residual | 0.0153216374269 |
Runs probability | 0.0498635890793 |
Amino acid sequence | MPLWIYSLHVNMSFLFLKGFGVGTEKFTMMMLYLYMTFGISVIILRAILM |
Secondary structure | LLEEEEEEEELHHHHHHHLLLLLHHHHHHHHHHHHHHHLHHHHHHHHHHL |
PRMN | LLLLHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHLLL |
PiMo | ooooTTTTTTTTTTTTTTTTTTTiiiiiiTTTTTTTTTTTTTTTTTTooo |