NONHSAT138412
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT138412 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2138 nt |
Genomic location |
chrX+:121385515..121389909 |
Exon number |
2 |
Exons |
121385515..121387589,121389847..121389909 |
Genome context |
|
Sequence |
000001 TTGAGGTAAG AACATATTTT AGTAAGCTCA AGAATAGTTT TCTAATTCAT TTTAATTCCT GGGAATTGAT AATGTAAGAA 000080
000081 AACAAACAAG GTAGCCAAGA AAGTGGTCTT CCTTATTGCA GAGACAGAAG GCAACAAATT AGTATTAATT TGTTATGAAT 000160 000161 GCATCACAGA AGGTACAAGC AAAATTCCTG TTACATATTT GAAAATAACA ACAGAAATTT GCAACATTAT CTGCCATTAA 000240 000241 ATATGTGCAG AGAAATCAGG GCTAGTATTG TCTTAGaggt aacttgaagg ttacttgaag gttacttaaa ggttacAGGC 000320 000321 TGGCCAAGTG GAACTAGGCC AATACTTGCA GCCTTACTTT GTTTTAAGTT AAAATATAAC AACTCTATGG AAATGACTTG 000400 000401 TCCAATTGTT CAATCCTTGC TAAGTCTCTA GCACACATTT TTATTCTGTT GATACTTATT TCGTGTGTGA TAATAAACTA 000480 000481 TGTAATTTAA ACAGAATGTT AAATTCAAAG TATTCAGAAA ACATTTTTGG ATGTATTAGG TAAATGCATC AGACCATGAG 000560 000561 GAGGTATCCT GGAAACACTA CTGACACCTC ATAAAGTGAA CTTCATATAT GTatatatga agggcagttt attatgtaaa 000640 000641 caatctcaca tgatcacaag atgaagtccc acaataggcc gtcagcaagc tgaggaagga ggaagccggt ccaagtccca 000720 000721 aaccctaaaa agtaggaaag ctgacagtgc agctttcagt ctgtggagga aggcctgaga gcccctggca aatcactggt 000800 000801 gtaagtccaa aagtccaaaa gctgaagaac ttggagtctg atgtttgagg tcaggaagca tacagcacag gagaaaaatg 000880 000881 aaggctggaa gactcagcaa gtctgctctt tccaacttct tctgcctcct ttattctagc tacattgaaa gctgattaga 000960 000961 tggtggccac ccagatggag ggcgggtctg cctctcccag tccacggact caaatgttaa tcttctttgg caacaccctc 001040 001041 acggacacac acacccagga acaatactat gcatccttta atcccatcaa gttgacgctc aatattaatc atcacaTCAC 001120 001121 TGTATTTTCT TCTATTAACG CAGTATATGC ACTTTTATGT ATGATTCTAT GCATGTAGGC TTCCTGGAAC AACCATTTGG 001200 001201 ATGAATTCAA TTGTCCAGTC AACATATAAT TAATTCTGCA AACAACTTAC TTGGCATTTT TACTATGGAA TGGTAAAAAA 001280 001281 AAAAAAAGTG ACCTAATTGC TTTGAAACTG CTGATTTTTG TGTATCCCTG TCATTGGAAT TACAGGTGCG GTATTCACAG 001360 001361 AAACTGTACC ATAGCATTGG AAAAACAGGG AAAGACAAGA TCATCTCTTC TTTATGTTTT GTTAACACTT GTCACCCTTA 001440 001441 AGATGTCTTT TGTTGTAGGA GCTTAACAAA TATATCTTTG TGATGGATGG AGGTAACCCA AGTGAGTACA AATAAATTAT 001520 001521 GACAGACAAG ATAACTTTTC TTACCTCCTC ATGCAATGGT AATATTTGTA GAATATGTTG TCAGTTTCCA AACAAAATAT 001600 001601 GTCAAAGAAT AAACTTCCAA TAAATATCCC CAGATATTCT AATCACGGCT TTAAATAGGT AACATGGTCT TTGTGGAAAT 001680 001681 AAGAGATCCA GTTGATGACA AAGCAACGAA TGAGACTGAA TGTCAACAAA GTTATATGAA AGGTATTTAT TCACCTGAGG 001760 001761 ACAGATTAGA AAGGTAGCAA ACACTTGGGA ATATTTTATC TTTGGAAAAA TAATGAAGTA TTTGATCATA AAGATCTGCT 001840 001841 AAAGTAAAAT AGAGCATATG CCTCATGACA TTTAATTAAT CATTAATTTC ATGCCTGTGT ATTGTGGGTT AAAAAGATGT 001920 001921 TTTCAATATG AATTGATCCA AAACAACTCT TTAAGTTAGT ATTATTAAAA TACATCATTT ATATAACAAA TTTTCACAGC 002000 002001 CAGAGAATGT GGAAGCATAA AATGCCAATG GTCACTGTAT CTCAATTCAT TTTCTGCCAA CTTATTTTCT CTCTGcaatg 002080 002081 gggaaaggat tccctattta ataaatggtg ctgggaaaac tgggtagcta tatggaga |
Predicted Small Protein
Name | NONHSAT138412_smProtein_959:1177 |
Length | 73 |
Molecular weight | 8028.2428 |
Aromaticity | 0.0972222222222 |
Instability index | 52.1736111111 |
Isoelectric point | 6.21588134766 |
Runs | 13 |
Runs residual | 0.0396390916464 |
Runs probability | 0.0455070455071 |
Amino acid sequence | MVATQMEGGSASPSPRTQMLIFFGNTLTDTHTQEQYYASFNPIKLTLNINHHITVFSSIN AVYALLCMILCM |
Secondary structure | LEEEELLLLLLLLLLLLEEEEEELLLLLLLLLHHHHEEELLLEEEEELLLLEEEEEHHHH HHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHH HHHHHHHHHLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTT TTTTTTTTTooo |