NONHSAT139027
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139027 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2072 nt |
Genomic location |
chrX-:151138324..151141132 |
Exon number |
2 |
Exons |
151138324..151138874,151139612..151141132 |
Genome context |
|
Sequence |
000001 TTTATTGCAG ACCTAGTCTA GGGGCAGGAG GGCTTTGGTG GTCTCAGTGC TTTCAGGTTT ATTTGTTTGC CTCTGCACTT 000080
000081 TTAAACTTGG GGCAGCGGGG AGGATCTCGT CCATGGATTT CAGACATCTG GGAGGGGCTG CTTCAGGCGT TTAGGTGGTC 000160 000161 CTGTCTGGCA GTGCTCAGTC TACCACTGAC TGCCAGTTCT GATTGTGCCA CGTTTCCAGC CACATCACTC ATTTTACAGG 000240 000241 GTCTCAGGGC TCCATTTTTC CTCCTCTCTT CCCATAGTCA CTGGCCCTTA TCTTTTGAGA TGGCTGGGAG TTTGGCCTCA 000320 000321 GGGAAAGAGG ACATCTTCTA GATATGGCAT TTGAAAGTAG AAACTGTATT TTCCAAGCCC AGTTCTTCCC TCGCCCACAA 000400 000401 TGGGAAGTAG CCACTTCAGA CATGAGAAAT GGTGTGGATT TGGCACATCT GTATGCCACT TAAGCAATTC TAACAGCTTG 000480 000481 AAATACTGCA GAAAAAATGC ATTTTGCTTC TTAAGTTGGC AGTCCCTTGG TCCGCAATAC AGGGGTCATG CCAACGTCTC 000560 000561 TTGCCCTGTT TACCCCTTAT TTTAGGAAAC AAATTGCCTT ATGGCTTAAA AAAATCCttt tggaagtgtg acgtgccagt 000640 000641 agaaaagcat agacatcatg agtgaacagc tcagtggctt ttcacaagta aacaggcccg tgtaaccaac acctagatca 000720 000721 ggaaatacag cattgcaacc ccctcaccac acacacacac acacacacac acacacacac acacacacac acagacacac 000800 000801 acacacacac acacacacac acacacacgc atgcatctcc aaaatgcctg tccccgtaca ctttcctccc caaaggaaac 000880 000881 cactctcctg ccttccagta tcacagatta atATGGGACG ATGGCTTTTA AAAAGACttt taattataat tttttaaaGA 000960 000961 CATATAAAGG TAGGGGGAAC AGTGCACCCC CATTGTttgt gaactcatgg ccactcttat tttcttttac accacccacc 001040 001041 ctccaattcc aacttagatt gtcttgaagc atatctcaga catcatatca ttttatatgt aattgtttta gtatgtattt 001120 001121 ctagtcatta atatttcaca aacataagaa aataccataa ttacaccaaa aattaaagaa taatttattc atgtctcaac 001200 001201 tgtccactca gtgttcaaat ctctcctatt gtgtcataaa tgatttctgt ttgtttttca agagtttgct tttaaataaa 001280 001281 ataagatcca gatattagca agtggGGCAT TTTGAttttt aaaaacactt tttatggaat tagaacatgt atacagagaa 001360 001361 gtgctcaaat cataagtgta cagctgatga gttgtcagaa tatgaccaca gcggtgtaaa gaaagccaaa tcaaggaccc 001440 001441 gaatgtgagc aggacctcag aagccccctt tgtcactgcc tcccagcaaa ggcagcacta tccggacttc taacaccatc 001520 001521 gGGTCGAGGG ACCTCAGACT GAATCAAAGA ATGAAGCCTC TTCCCGTGAT GTTGTCTATG GCCCCCAGCC CCAGCCTCTG 001600 001601 GAAAATCAGC TCCTCTCTGA GGAAACAAAG TCAACTGAGA CTGAGACTGG GAGCAGAGTT GGCAAACTGC CAGAAGCCTC 001680 001681 TCGCATCCTG AACACTATCC TGAGTAATTA TGACCACAAA CTGCGCCCTG GCATTGGAGG TGAGGAGCAG AACGACGTTC 001760 001761 TTCCCCTCCT AGAGGGTCCA GGGGTTGAGG GCATAGGCAT GGAGAATGCA CCTGGGCAGT AACAGAGGGT GCCATGCTCA 001840 001841 TGGACAGGAA CATCTGCTAT TGACCTGTCa ggtaagagat attaactcta ttctcagcag tgtcattgac cttgatcaag 001920 001921 acttttccct tctctcgccc tcagtttttc cagtggtaaa atgagaggac taaactagat tgttgatctt caagatgtgt 002000 002001 gtccaattct taacagtccg tgaGCTTGGT TTTGCCATGA AAGAATAAAT AAAGAAATAG GATTAGATGC TG |
Predicted Small Protein
Name | NONHSAT139027_smProtein_1805:1963 |
Length | 53 |
Molecular weight | 5728.4978 |
Aromaticity | 0.0384615384615 |
Instability index | 49.8557692308 |
Isoelectric point | 5.97613525391 |
Runs | 9 |
Runs residual | 0.0227075184702 |
Runs probability | 0.0405797954817 |
Amino acid sequence | MHLGSNRGCHAHGQEHLLLTCQVRDINSILSSVIDLDQDFSLLSPSVFPVVK |
Secondary structure | LLLLLLLLLLLLLLEEEEEEEEELHHHHHHHHHHLLLLLLEELLLLLLEEEL |
PRMN | - |
PiMo | - |