NONHSAT140925
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT140925 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1690 nt |
Genomic location |
chr16-:20451077..20458302 |
Exon number |
5 |
Exons |
20451077..20452277,20452816..20452908,20453548..20453710,20457315..20457433,20458189..20458302 |
Genome context |
|
Sequence |
000001 ctcacatgta atctaaacaa gaactctaca agagaggtat ccagagccac attttataga taaggaaatt gaggctcaga 000080
000081 gaggactaga aatttggcta agctcctgca gctgAGTTGG GGGCTGCATC TGACAAGTGG CCGTGGTTTC AAGTCTCTGG 000160 000161 AGTCCCATTT TTTTCTCTTC CATGGAGTTT GTTTGCTGCA GTTTGAGGAG CCGAGGCATA TGATAAATAC CAGgtgtcct 000240 000241 tagaagaaga ggagattggg ccccagacac acatgcacag aagaaagacc acgtgaagac agagggagaa gacggcgatc 000320 000321 tacaaaccaa ggaaacatcc tcagaatgaa accaaccttg ccaacccctg atcctagacc tccagcctcc acaacggtct 000400 000401 ttggactcag atggaattat accacggggt ttcctgggtc tccagcatgc agatggcaga ttgtggaact tctcagcctc 000480 000481 caaaatcgat tttaatgctg tgtgatcatc ttagtgcacc acacattttc tgcattttga tttttttctt ttgtggtgac 000560 000561 tcccgaagat agaatttctg agctaaagga tattttattt tatgttcctg catacttttg ccaaatggtt acatacaaag 000640 000641 gatgaagcct ttacattccc actggcagaa aatgagtacc cACAAGTGCC CCAAGTCTAT GGTAACCTGT CCTATGGAGG 000720 000721 GAAATCTGAA AGCTCTTAGT GAGACCAGTG GGCAGATGCT GAGCCTGCCC CCAGACAGAG GGAGAAGTCG AACCACCAAG 000800 000801 CATTTGCTAG GCGGCGCAGC ATCTATGTGA TCAGGGCCAA TGATATTCTT TTGCTCTTTC CAGCATTGCC CAGTGATCCT 000880 000881 GGGGATGCCG TTTGGAAGCT GCACACCTTT GACATCTTTA GGGTCGAAGA GATGATGCTC CCCATGGGGA CTGACCAGTG 000960 000961 ATCCATTAGT TTCTTGTGGA GTCTTCGGAG GTCTACGGGG CCTTCCTGGG GTGCACCTCA TTTCCCCCAC TCCTGACTTC 001040 001041 GCAATTTACT CCTTTGGATC TTTCCAGAAA CCGTCTTTGG CAGTTCTGAA ACAAAGGCCA CCTAGTGACC AAACACAAAA 001120 001121 CAAAAAACAC TTGGAAATCA TCATTTCTCA AAAAGACTTT TGTTTTGAAA GAGACAATAC TGTCTGCCTG TCCTTGGAAA 001200 001201 GCGTCCCTGA TTCAGGGTTT CCCCCTAAAT GGCCAGAAGC AAAACAGCTG GAGCCTGGAG CACAGGATCA TTTTGACAGC 001280 001281 ATTTGAGCAC TACCTCTTGT ATCTGATTTG TGGTAGGGAT CAGGCTGTTC TTAGAGTAGG AACAAAATGT GCTTTGGGGA 001360 001361 GAATCCAAGT GAAGAAATAC AGAAAAAAGC TGAAGCAGCA GCCAGGGTTA CAAGTTTCTc catatcccca gtgcctggca 001440 001441 cagggcctgg ctctgagtgg gagcccagGC AGAGCGTGCC CATCTGATTC CCAGATCACT GTGCCCTGGA AACCCTGATA 001520 001521 TTTACCTTCC TGGGGTATTT GTATGGAGCA GTCACCCTTT TCACATGCTC CTGGAGTTCC CGCGTTAGTG CCTCTGGGTC 001600 001601 ATGAGAGGAG TAGGCTGGAG TAAGGACTAT AAATGCCTTT ACCACCTGCA GGAAAACAAA ATACCCAGAA AAGATCAGGC 001680 001681 CTCGTATAAC |
Predicted Small Protein
Name | NONHSAT140925_smProtein_641:829 |
Length | 63 |
Molecular weight | 6804.9498 |
Aromaticity | 0.0161290322581 |
Instability index | 41.5435483871 |
Isoelectric point | 10.0394897461 |
Runs | 11 |
Runs residual | 0.0237788018433 |
Runs probability | 0.0487225193108 |
Amino acid sequence | MKPLHSHWQKMSTHKCPKSMVTCPMEGNLKALSETSGQMLSLPPDRGRSRTTKHLLGGAA SM |
Secondary structure | LLLLLLHHHLLLLLLLLLLLEELLLLLLHHHHHHLLLLEEELLLLLLLLLLHHHHHLLLL LL |
PRMN | - |
PiMo | - |