NONHSAT140949
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT140949 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
3846 nt |
Genomic location |
chr16-:20807666..20811511 |
Exon number |
1 |
Exons |
20807666..20811511 |
Genome context |
|
Sequence |
000001 CACATAAATG CATTTCTTAA AGTATTTAAA AACAACACAC AAAAAATAAG CACATTCTAA ATCTAATAGA ACTAAAAATT 000080
000081 ATGAAAAGTG TTTAATACAT AGTCTTTAAA ATAGTAATCT TCTTTTAAAT ATATCTTTTT TTATTGGTTA GCTTTTCTAT 000160 000161 AGGAGAAAAC CAAAAGGACT AAGTGGTGCC TTGCAGGAAG TAGGAATAGA ATTCTCAGGA CGAGAACATT CTGGTTAGTA 000240 000241 TACATTAAAA ATTATGTAAG CCATTTGACT TTTAAAAAAT ACTTCATATG AATTTCATTT TTTGGTAATG TCATTAGTAA 000320 000321 GGGATATCTT CAGCCTAAAA AAAAAAAACT CCTAATCTAA ACAATTCACA TTGTTTCTAA GACTTTCAAA TTACCACTTT 000400 000401 CATAAACTAT TGTAAGATAC ACTGCCATCT AGTGGCTTTC TAGTTGCTAA GAAGAATGAA AAGAATGAGC CAAATCAAAT 000480 000481 GGAGATTAAA CAAGTGCTCA AATAATAGAA TGGACTAGTG AAAAAACTGA ACAAGACTAT TAGATTATTC ACAAATCCTG 000560 000561 GTTCCTGCAG AACGCTGGCC ACATTTTGGG GAACTGTCTA ATACATTTTC ATATCCTCCT CTATAAATGT GGACGAGCTT 000640 000641 GTCTTTCACT GGTAATGCTG CCATAGCCTT CCACTTCCAA GACCAGTTTA TCATGATTAA AATTAGTAGA TGGTCATAAA 000720 000721 ACTAAAACTG TGTTCCAATT TCTACACAAG TGGTGTTTTT CTTTTTAAGT TATTTCTTTA GTACTAAGGA AATAGTACTA 000800 000801 GTACCACTAA ATTCAGTGTT TGATATCTGT ATCCTCAGGG TTGGACGATT CTCGGAATAC TGCCCTTCTT GCTTGGAAAA 000880 000881 TGATCAGAGA TGGTTGTGTA ATGAAAATTA CAAGGTCGTT GAACAAGGTT AGTAGTGTCT TGCCTTTTTA TTCTGTCATC 000960 000961 TCAAACTTCA TAAACAGTCA TACGTTCTTT GAAACGTAGA TTTAATGTGT GCAGTCATTT ATAAATCAAT GACATTTCTC 001040 001041 TTTTTTGTCA TAAAACTGTA TACTGAAGAA ATTAACGAAT GCACAGTTTC TAAAGCTGTT GCATTTGTCT GTGGAATCAT 001120 001121 AGGTTCCCAC TAAGAAGAAT TTCAGCATTC TGGCCAGAAA TTTGAATACA ATTCAAGTTG AAGAAATGTC TGCCTGTAAC 001200 001201 ATTAGCATCC AGGGTCCCAG CATATATAAT AAGGAGCCTA AAAATATAAT AAATCCTCAT GAAAAAGTTC AAATGAAGTC 001280 001281 AATTTGTGCA AATTCTCCTA TAAAGGCACA ACAGGATCAA TTACAAGTAA AAAACAATAT AAAAGCAAGT CTTCACAATG 001360 001361 TCAAAAGTTC CTTACCTCTT TTTAATACTA AGTCCTCTAC TTCTGTGGGG CAGTTGCAGT CTCCTACCTT GAATTCACCT 001440 001441 ATCTATATGC AAAAGCAAGG AAAAAATGAA CATCTTGCAT TTAATACCAA ATCTAAGGCT TCAACAGTTG GTTCAGAATT 001520 001521 GGTACTTGTT TCTACCACCG TTCCAACTGT TCATCATGTT TCTGATTTGG AAATGAGCTC TACTCTGGAC TGTTTACCTG 001600 001601 TGTTGGCTGA TTGGGAGGAT GTGGTTTTAC TGCCAGCATC TCAGCCTGAG GAAAACGTAG ACTGTACAGT TCCCATTAGT 001680 001681 GACTCAGACT TAGAGATTTC ATTTAATTCT GGAGAAAGAT TAATGGTTTT GAAAGAATTG GAAATGTCAA GTCATGAAAA 001760 001761 CTTTGGAGAC ATAGAGGAAA CTCCTCAAAA ATCTGAGACT TCTAAGTCTA TTGTGTACAA GAGTCCTCAC ACTACTATTT 001840 001841 ATAATGTAAA AGAAGCCAAA GATCCAGGTT CAGATATTTC TGCCTTTAAG TTACCTGAAC ACAAATCAAG TACCTTCAAC 001920 001921 AGAGTTAATG CCAATATGTC TCATCCTTTA GTTTTGGGGA AACATCCTCT TCTTTCAGGT GGTACCAAAA GGAATCCATG 002000 002001 CAGTCCCCAA GCTTTCCCAC CAGCAAAAAA ACAACCCTTC ACTATTCATG AAGAAAAGCC TACATCATCT GATTGCTCCC 002080 002081 CAGTAAGAAG TTCTTCCTGG AGGCGTCTCC CATCTATATT AACTTCTACA GTTAACCTAC AAGAGCCATG GAAGAGTGGG 002160 002161 AAAATGACAC CTCCATTATG CAAGTGTGGT CGGAGATCTA AGAGACTTGT TGTTTCTAAT AATGGACCGA ACCATGGAAA 002240 002241 AGTCTTCTAT TGTTGCCCTA TCGGGAAATA CCAAGAAAAC AGAAAATGTT GTGGTTATTT CAAATGGGAA CAAACACTTC 002320 002321 AAAAGGAAAG AGCCAACAGC ATGGTTCCAT CTCATTCCAC AGGGGGACTC ACTTTTAGTT CTCCAGAAAC AAGCCATATT 002400 002401 TGTGACAGAA ATTTAAGTAT TTCCACCAAA AATTCTTTGA GACTCAGGCC TTCAATGAGG AATTGATAAC CTTTCATGTA 002480 002481 TGAATCCTAA TTGTTCCTTG AATTTCCAAA CATGAGTATT CTGATAACAT CTTACACtat tttattttta ttttatatat 002560 002561 taatGTTTAC TGCATTTACC ATACTTTCTT CAGGAACCAC AAGTGTAATC TTTTGTAAAC AGTATTTATT AGATTACATA 002640 002641 TAATAAGCAA CAATAGTATA TGATCCTTCT TTTATAGTTA GACCTTGAAA CAAGTCTAAA CTATTTTTAA ATTATTTGCA 002720 002721 AAAAATGTGA CTAATAAAAA TCCCTAGTCT ATTTTCAGGT AGATTCTTGT ACTTTGAGAT TATCATAATC TTCTAACTGA 002800 002801 TATTTTATAT TTTTCTAAAA ACTTTTATAA GTTCTTTAGT TTTATTTCAG GCTTGAACAT TGGTTCTGAT TTGTATATCA 002880 002881 ACATATCAGA AGAATTAGTC AACTAAAGTT TGAAAACCTA TGTAGCAGAG ATCTGGTTCA GAAACTGCTT CTATACTATA 002960 002961 CATTTAAAAA TTAATCAGCA ATTGATGGTA TTATTTTTAT ATTAAGAAAT GATAGGAACA TTGACACTAA TGTGGAGGAA 003040 003041 TTTGCCAAAT ATTTTATTTC AAAATTTAGC CTCTGATATC ATAACCACAA GATATTTTAA ATCAACAGTT TCTAAGCATA 003120 003121 CTACCACAGT TTTTATGACC TCTCCATCAT CTTGTGGTTT CTAGAGATTG ACAGATACTA TGTTTGTTTT ATAGATATGG 003200 003201 TAATTAATGA AACAACTTTA AATTGTCTTC CATTCTTTCT TCCTCAGTTC ATTTCTTTTT GTCTTCCCAC TGATAGTCTT 003280 003281 TGGCAGCTCT TGAATAAATT CTACCTGTTG GCATCAAGGG GAAGAAAATT AGCCTGGAAA TTTTTATCTT TACATAAAGC 003360 003361 CAATTATATA GCAGTTTGAT TATGAATTCT AGGTGGAAGA ATTAGAATAG TCTTTGGAAT GGGTTTTGGG TAACAGCCAA 003440 003441 AATAGGGAAA AGGGTATTGT TAGGAAAGTT GTCTTGATAT TAAGTATTTA CTGTGAGTCC AGTAAGCCAA AGGACCAAAC 003520 003521 AAAATAGGTT CAGGGTTTCA TTTTAATCTC AAAGATTCTG ATTCTTACCC ATATGTCATC AGTTCAGTTT GGGACATGTG 003600 003601 GTGCAGCATG TGTGAAGAAA ATATTCATTA AAATGTAAAA ATAAACACTT GAAATTGTCC ACAACACTGA GCAAATATTC 003680 003681 GTTATAATTA GGATGCCTAC CTTTCTGGGA TATTTGTAAG GTGCTGTAGT TTTTTTAACA TGCTCCTGAA TCTCCTTTAT 003760 003761 TAGTTGTTCT TGATCATGTG ACTTGTAATC AGGATTTAGA ACGACAAAAG CCTTTACTAC CTAAAATAAA TATTTGAAAC 003840 003841 ACCAGG |
Predicted Small Protein
Name | NONHSAT140949_smProtein_3008:3163 |
Length | 52 |
Molecular weight | 5772.6944 |
Aromaticity | 0.117647058824 |
Instability index | 42.8196078431 |
Isoelectric point | 9.78216552734 |
Runs | 10 |
Runs residual | 0.0418365365948 |
Runs probability | 0.0481010422187 |
Amino acid sequence | MIGTLTLMWRNLPNILFQNLASDIITTRYFKSTVSKHTTTVFMTSPSSCGF |
Secondary structure | LEEEEEEHHHHLHHHHHHHHHHLLEEEEEELLLLLLLLEEEEEELLLLLLL |
PRMN | - |
PiMo | - |