NONHSAT142374
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT142374 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3461 nt |
Genomic location |
chr16+:49376129..49383279 |
Exon number |
2 |
Exons |
49376129..49378260,49381951..49383279 |
Genome context |
|
Sequence |
000001 GCCGAAAGTA AAGAGGGCCA CAGTAGAGGA GGGAACAATG CCACACAACA TGAACAGCAA GGAGGGAGCA TTCCATTCTG 000080
000081 AGCAGAGGGA CGCGAGGAGG TGGGGCCTGA AAGGACACAG GAGGCACTGA CCCCCCGAGG CAAGGGAGAT GTGCCTTCTC 000160 000161 TGGGAGACAG CGGCTTGGGA TGGTGGTGGG GCAGGTTCCC CGGGGAAGAC CTGGACCAGG GGCTGGGGGT GGGAGTTGGA 000240 000241 GAGGAGAGTG CAGTCTTGGG AGCAGATTTA AAGTTAAGTG GCCTCCATGG ACCCCACATG GCCCAGTCAG TTTGGACCCT 000320 000321 CCTGGGAGAT CCTGAGTTCT GAGCCTAGGC GGTCTTGTCC TGCCTCTGCT GAGCACCCGG GCCATGGCAG CCATCAGGAT 000400 000401 GCAGGAAGGT GGGGTCCCCT CCCAGCAGCT GGGAAAGCAT GAAGGAAGTT CATTTCTCTG CAGCAGCTAT AGTGATCGTG 000480 000481 AGGAGAAGTA ACTGAAAAGG TCAGACACAC ACTTCACTTA CACAGCTCAT AAGTCAGTAA AGAAGCAAAG CCTGAGACTT 000560 000561 CCTCAGGAGG TGAGTAAATC CTCTGCCTTG CCAAGGCCTG CAAAGCTAGG CTTGGGGCCG GCCAGCCTAG GGGAGTGGCT 000640 000641 TCTCCTGCTC TAGCTCCCAG TGCCCTCTGG CTTGGCTTTC TGAAGAGAGG GCTAGAGGAG CTGTGCCTCT AGAGTTCAAA 000720 000721 AGAAAAGTAC CTTagggagg gagtataggg ttgcagtcaa aagaatgggc tctggactca taaaaacatc agttcaaatt 000800 000801 cagactcata ccacttattt gctgtgtgat tttgggccac tcacacaacc tctctgagct gtcgtttccc ctccatactg 000880 000881 tagggctgat aatagtaccc aaaccataag tcattgagag gattcaatga agatcataca agtaaaagag ttagatcaat 000960 000961 gcctagGTTC CCACTGCATA TTGGCTGTGG TTGTTATCTT TATCATTTAA ATCATTTATT ATTATTAACA CTTTAATTGT 001040 001041 Acagcctcca aaatgacccc tgtgatccct tccccctggt attcatgcct gctatttaac cagaataggg ttgatctgtg 001120 001121 tactaatagg agattgtggg gacagcagaa tgtgacttcc aaggctaggt cctgaaagat gctgtgactt tcgcctgagt 001200 001201 ctcttggatc actcgctctg ggggaggact gctgtcatgt catgaggaca ctcaggcatc cccatggaaa agtctgcatg 001280 001281 gtgagcaccc gagacctcct acccacagcc agcattaact tacctgctct gtgagtgagg cagcttggag gaagatcccc 001360 001361 ccaccccaga taacccctaa atgacagcag ctcccaccaa catcttctct ccaagctcat gagggagtgt gagtcagaac 001440 001441 cacctagcta agctcgtgaa ttcctgacct gcaaaaaccg tgcgagatca caaatgttca ttttttttat tgaagccatt 001520 001521 aagttttggg gtgatttgta atgcataaat aattaataca ATTATTATAC TGAAAATTTC TCACTAGGAA GTGGCCACTC 001600 001601 ATTAGGCAGC CCCAGCCTTC AGGCTCTGTC CAGCCCAGTA AAAGTCAGTC ATTTTTGTGC CAAAGATCCC TGAAAGAGAC 001680 001681 agcatcatgt ttgggtatca cctcctccag agagccttct tggccaagtc aagagctttt ctccatgtgc ccacagAAAG 001760 001761 GCTCTTTGTA ATCCTCTACC ACACTGCATT GTCATTCTGG Gaccaatcat gttttcatct aggctttggc tactaggagg 001840 001841 ctcagaccca aatttTCAGG CCACTGCGAA GACTCTCAAT TTATTCTTGC CCTAGTTTAC TCATCTATTT GCTTTGTCCT 001920 001921 GTTttgtgtg tcccttgtgt aaattatcac acatcctttg tgaaatgagg cggcatGAAG CAAGTCCTTG CTGAAGGTCC 002000 002001 AGGGCATGGC AAGAGAACCT GAGTTTAAGA AGCAGACATC ACCTGCTGGC AGCAGGCAGT ATCCTCTCAG TCAGCCTTGA 002080 002081 TGTCCCCTTC CCTGGATCCT CACTTCTCAT GGCAATCTCC CCGTCTCCTC AGGAAAAAAT CTACAACTTT CATCAAATTA 002160 002161 CTCAGGGAGA CTTTATTCTA AAGAGACTGA AAACGACCAA CATCAATTTT GACTCCTATG GGCATCTGTA AATAGCTTCA 002240 002241 AGGTTTTAAG GTGAAATGTC ATGTACCAAA ATACACATTC TGGAGAAGCA GGAAGCTACA GACCAACTTG AGATGAAAGT 002320 002321 CTCATATcaa tgttttccca agtgtgctcc ttggaataca ggttgacatg atatgatgcc cagcaaggga aacaaaacat 002400 002401 attcatgttc aaattagttg gggaaatgct ggactaaata aggtttgatg ggattctttt ttctgcagga cttctcagaA 002480 002481 GGGGCTAGAG TAGGCAAAGT TTCCCAGATT TACCTAATAA AAGCATTGTT TCTGTGGGAG TTTCATTTGT TATTACATGT 002560 002561 TTCCTGAATG CAGATTCATA GACTATCCTT TGGGGAACCC TCGTCCTCAC GGGATGTATG TTCATGGTGG TGTCTTCGAG 002640 002641 TTTGTGCCCT TGTGAAGCAT TCTGGCAGCA AGCATCTGAA CACTTCCAAA AGGGGGCGAT ATTTAGGAGA AATCGCTCAG 002720 002721 CCTGAGTTAG AACAAATGCA GCTGCTGGTG TCTCTTGGTG CCTGGGAGCC CTAGAGTGTc agagggagga gcgtgcacac 002800 002801 tggaaccagc agcctggtgc tgcgtctcag ctctgtcgct aactggctat gcacctctgg gcatggcact taacccttct 002880 002881 gagccccagc ccgccatctg taaaaagggc ttgatgtgag gattgaatga gatcatgcag ggaacacaat gtctggcact 002960 002961 tggaagcgtc caccataaaG AGCCAAGGCA GTAGATGGCC CAGCTGGGTT TGGTCCAGGC AGAGTTTACC CTCTGCCCTG 003040 003041 GAGGCTCCAG GAAATGCTGC CACGTGGCTC CTATTGCCTT AACCACATCC GACCTGTTCC TGACAGCTCC CCACATCTCC 003120 003121 AGCTCCTTTG CTGGTGCTCC AGGCACCTCC AAACGTGGCG AGCCCCTCTC CCCTGCCCTC TTGTGGCAGC TGACCTGGCA 003200 003201 GGAGTGGGAC CAAGACATCC AAGGCAGCTC CTTTCCACCT GCATGGGCAC TTTCCTCAGG ACATCCTTGC CCCTGGCACC 003280 003281 ACCTTGGGCC AGCAAGCCAC ATGGAAATGG ATGCAGAGGC ACCACTGTTT GCTGACAATT ATACACTGTC CTTAAGGTCA 003360 003361 CCCTTGGCGA TCTGTCACCA GGAGCAGACA AACCCACACC TCAACCATCC CATCAGAGCT TGTTTCTATC TGCATCTGTC 003440 003441 ATCGCTGATC GCATTTGAAT G |
Predicted Small Protein
Name | NONHSAT142374_smProtein_3053:3334 |
Length | 94 |
Molecular weight | 10175.8829 |
Aromaticity | 0.0537634408602 |
Instability index | 53.1709677419 |
Isoelectric point | 9.54766845703 |
Runs | 11 |
Runs residual | 0.0126443647949 |
Runs probability | 0.042708483885 |
Amino acid sequence | MLPRGSYCLNHIRPVPDSSPHLQLLCWCSRHLQTWRAPLPCPLVAADLAGVGPRHPRQLL STCMGTFLRTSLPLAPPWASKPHGNGCRGTTVC |
Secondary structure | LLLLLLEELLLLLLLLLLLHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHLLLLLLHHHHH HHHHHHHHHLLLLLLLLLLLLLLLLLLLLLEEL |
PRMN | - |
PiMo | - |