NONHSAT142647
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT142647 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1516 nt |
Genomic location |
chr16+:56142935..56170588 |
Exon number |
5 |
Exons |
56142935..56144151,56145720..56145859,56158886..56158948,56166142..56166207,56170559..56170588 |
Genome context |
|
Sequence |
000001 GGAACAAAAG GAATTTTGTC TGAGATTTTA GCAGAAAAGT AATTTTTGAA ATCTATTCTT GGATTTAGAC GTTTATTGGA 000080
000081 TTTCAAAGCT TCTTGCTGCC CAGGAGCTTG TGAATACGGT CAAAGGTCCA TGAAATTTCC AAAGTGGTAC CACAGCAGAT 000160 000161 GAACCTGAAT GCAAACTGGA GGGACCAACA GAGTCCAGCC TATAGACATA AATCCTTAAC TACACCTAGA TCTCACTGTC 000240 000241 TTTTCCAATG GTCAAAAGAG GGGCTCTTGA AATGGCTCCA TTGTTTTATA GAAACAAGGT CTTCCTAAGA AGTCTTTTTC 000320 000321 TCCTATCTTT TTCTTACCCA AAATAAAGGA ATGGCCCAAA ACCTCAAGCC AAGCTTACCA GCTATAAACA ACTTGGTGGT 000400 000401 CAGCAGCCAA AAGAAGAGTG GACATGCCAT GGTCATGTGG CACGTACCCT ATACAAGCTT CACAGAGAAG AATGGAAGCA 000480 000481 CTTGATTGTA AGACAGAGGG TGAGATGTGA GAGGAATATT AACCTTCACT TTCCACAGGC ATTTTTTTCT GCAAATGGCA 000560 000561 CCAGCTTTTG GACTTAAAAT TTTATTCCAA ATACTATTTA GATGCATCAG GGCCCTCAAA ATATGGATTT CAAGTTGGAG 000640 000641 ACATCAAAGT GCATTATTTA CTAAAACCAC TGCAGCTTTT TTCCCCTCTC CTTTCACAAG ATGCTATTGT AAATTCAGGC 000720 000721 TGCTTTAATC TCTGTGATTA AAAAAAAAAA GGAAGAAAGA AAAAAAAAGT GCTGCTTGAA GAGGAACTGA ACTCACAATC 000800 000801 TGGGAGCTAG AAAGTAAATA TTACCCAGAG AGTACCTCAC TTTAATTACT GGCCTGAACA TTGGTTTCAA TTTACATGTA 000880 000881 TTTTAATTAG CCACAGAAGG GTTCACCTAT TACTCTCTGA ATACAAAACT TAAAAAGCAA ACAGAAAATA GGGAAAGAAA 000960 000961 GGCTTATTTA AGGGCCTCCA AGGATTAATC TTTGCATTCT TCTCATTTTT TCCCCGAATT TGGGGATAAA ATTTGTCGCA 001040 001041 GGGAATTTGA TCTTAGGGAA ACATTGAGTT TGGTTTGTGA ACACAAGCTA CTTCTGAACA CTATTTTAGC AAACAGAATT 001120 001121 TTAGAAGCAT AAGGCTCTAG CAGAGGGCTA TACAGAATTT TGCATAAACT AAATAACAAC CGTTTCCTCC TGAAATGCAG 001200 001201 GAAATCAAGC TGCACGGTCC TTAGGTCTTC AGCAAAGCTT GGACCACTTG GCAAAGTCTT CTGTCTCCAG AGGAATGATG 001280 001281 GGAAAACTAT Gggacaaaag tcaggagagt ggtgctggct gatcctggcc tggacattga ctccctgggg actttggTGC 001360 001361 TCTCTCGTGC TCTCTCTGTC TCCAGTGATA AGCTGACCAG ATGCCTTGAA TTAAGTACAG tatgcagcAA TGCCAGCCCT 001440 001441 GGACTTTTCC CCAACCTATC ACCCAACCCA CTTACCTGGA GCCAAGGGTC ACCAACATCT CTAATAGAAT CCAACT |
Predicted Small Protein
Name | NONHSAT142647_smProtein_554:727 |
Length | 58 |
Molecular weight | 6744.1191 |
Aromaticity | 0.19298245614 |
Instability index | 51.8596491228 |
Isoelectric point | 11.0150756836 |
Runs | 5 |
Runs residual | 0.0662280701754 |
Runs probability | 0.0239357004063 |
Amino acid sequence | MAPAFGLKILFQILFRCIRALKIWISSWRHQSALFTKTTAAFFPSPFTRCYCKFRLL |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLEEEEEEL |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | ooooooooTTTTTTTTTTTTTTTTTTiiiiiTTTTTTTTTTTTTTTTTToooooooo |