NONHSAT143238
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT143238 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
3473 nt |
Genomic location |
chr16+:68298423..68335722 |
Exon number |
3 |
Exons |
68298423..68298479,68307721..68307807,68332394..68335722 |
Genome context |
|
Sequence |
000001 GCTGCCGCGG CGGCGGCGGC GCGACCGAGC ATCCTGGCGG CGCCGGGCCA CTGGGAGgca gtggcgtgat cttggctcac 000080
000081 tgcaacctcc gactccctgg ttcaagcgat tctcctgcct cagcctcctg agtggggatt acagGCTTTG TTTACACTTG 000160 000161 GAGCCACCTT GGTGTGGGTC ACCGGGACAG TGTACTCCTC TCCTGCCAGC CTCCCCTTCC CCGAGGTGTG GTGGCTGCAG 000240 000241 TCTCAGGAAG AGCTTGGTAC TTGTGGGGAC TTCTGTTTTC TCCCTGTGGA GATCAGTGAA GACTGGGAGG AAAGCTGCTT 000320 000321 CAACCTGAGT CCGGCTCTTC AGCAGGCTGC ACAAGTGGAA GCAACTAATT CTGGTGCTCA GGCTGGGCTC TCCACCCAAG 000400 000401 TTAGGCCTGC TCTGGCCTAA TGGATCTTAC TGTATGAGCA GGACGGCTGC ATTGGATTGT ACAACTGTTT TGTGATGCCC 000480 000481 CCAGACACTG TCATCCTGGG CCGAGAAGAA CCTGCTAGCT TGACATACCC CATGGGCTTA TCCTTAGGTT TTGGAATTGG 000560 000561 TCAACAGTGA GGCAGTCTCC CTTCCTGACC ATTCTTCTCC ACCCAGTCAC AGATAAGGGA ATAACCTTGG CCATATATTT 000640 000641 GCTCAATAAA GATTGAAGGA AGCATGGTCA TAGTTGCCCT GGGTTCAGAG CATAATGCAT ATGTGAAGCA TGGGGTGACA 000720 000721 TTCCTACTGT CATGGGTTTG GGATTTGTAA CGGCAAATTC CTGCCCGACG ACAGGGTGTC TTATGCAAAG GCTGACTTGC 000800 000801 CTGAACGCTA AGAACATGAC TTCTGTCTGA GCTAAGCTGG CACCCATCCC AGGGCTCCTC TGGAGCTAAT CCTTTAAGCA 000880 000881 AAATGTGCTT GCCTTTTAAA GATCCCTGAC CCCAGCTTTA GCTTTCTCCA CCAGATAACC AGCTAATCCC AGGAATTTGC 000960 000961 TGCCCCCCAC CAGTGGCTTC TAGGGAAAGC AAGGACCTCA CATGCCAGGT GCCCTAGTAC TTGCTTAGTG AGCCATGTCA 001040 001041 TCCTCCTTTC ATTTTTGGAT GGTGACAGCA TTTTTCCCCT CTGTGCTGGA TACAGACTTC TCCCAGGATC CTCTCTTTGG 001120 001121 GAGCGAAGCC AGAGGATCCC TACAGCACTC AAGCTTCATG GTGGAATTAA TTTCTGCCAG CTCTTTGTTG TCTGTCTCCT 001200 001201 TAAATCCTTT TCCTGGTGTG CTTATTATCC CTTTTGCAGT GAGTACAGTT TATTAAGTTG TCAGCCCTTT AATATTGGGG 001280 001281 AAACTTAATG AGTATAAATA GCAGGGAGCA CATTGTAACA GCACAGTGTT TTGTTTTTTT CACCCGGTTG CTGTATGAGA 001360 001361 ATGGCTTTCA ATCCTTTGTT TCTATGCCTA CAGACAGAAA GCAAGATGTC TAATATTAGA CATACAAGTT GCTGCCTGTT 001440 001441 ATAACGGTGA ATTATACCTT TGTGCATGCC TAGGATGTTT GTTGTTTTAA TTAGCTGCAA TATATACGGC CTGTGTACAC 001520 001521 AGAATTTAAT CACTTCGGCA GGTTGAACAA CTCCATGTAG ATAAGAGCAA GTGTAGGCAA AGGTTTAGAA AATGGACATA 001600 001601 AAGTCAAAGA ATGATGGCAG GTAGGATGAA GGAGAGATAC TTAGGAAATC CTAAAAGAGG CGGCAAGAAG GTACCTCCCT 001680 001681 GTGTAACTCA CCTTCCCCCA TGACAGTGAG TAAGAGACAC TCACAGGCTA TGAGGGTACA CCCCTAGCTG AATGTTCTGT 001760 001761 GTTGTTTCCT TAGACctgtg gtgtccgctg caacagctac tagccacgtg tagctaatta cattaaaatg aaataaaatt 001840 001841 aaaagctcag tttctcagtt gcgctaatca catttcaagt gctcagcagc cacccgtgtc tactactaca cagtgcagac 001920 001921 acagaacata tcatcactgc agatagttct actggacaat gttACGCTAG AATAAACACC AAGGCAGTCA GTTAAGGCAG 002000 002001 CTATGGTTTG GAAAGGCATA CGGACAGAGT CTGCTTAGAA GAGATACAAG TTGTTAATAA AATTGATCCT GTTGATAGTA 002080 002081 GTTTGTTTTT GTGGTGGGTG CTGTGAAGAG TAAACATTAC TCAGTGGAAA GCTAAGTTCA GAAGGTACTT TGTTTTTCCT 002160 002161 CCCTTGCCTT AAGTCCTTGG TATTTATAAT CAATGCTGAA CCTTCTATTT CACTACCGCT CCCTGTTTTA GATATTCAGA 002240 002241 TTTAAAAGGT TTTCAAAGAA TTACTTTCTT CCATGTTCAA AGCTAGATTT TACTAAACAC ATGTATCACA TTCATATATA 002320 002321 TTGTTTCTTG GCCCCACTGC CAAAGGAAGT CAGTCAGTAA TTTCACAACC GTTATCAGAG TTTGGAAGCA GAAATAGCTG 002400 002401 TTAACTAAAA TCTCCCACTG CTCAGACTAC TTTCTGCCCT AATGGCCATT ACTATCCAGT CTGTATTGCT ACAAGGGACC 002480 002481 CACTGGTACC CCTTTTAGAT TCTATCAAAA GGAACAGGGT TTTCCTAGAG GCAGGCAGCC TGGTGGTATG GCACAGCAGA 002560 002561 AGCTTACTGC TAATGAAATG GGAACCTCCC CCTCCCTTGT GGTTTCAGCA CAGAACCTGA ATGCCAGGAA AAATTCCTGG 002640 002641 GCCAAGAAGC TAAAGCTAAA GAAACCTTCC TTTTTTCAAC GTTTTTTTTT CTTTCAAACT GTAGGGTCAC TTTTGATTGA 002720 002721 GGCAAAGGGG TCCTACTGTA AGTGGAAAAG ACTCACTCCC CTAACATAAG TTTTCACTGT GGTGGGATGG TGCCGCCCGA 002800 002801 TATGCTTGAT ATGCTTTTCC TTCCACATGT TAAGCTAGGA AACCTAACAG GATGTCAGCA GGGCAGTTAA CTCTGGACTC 002880 002881 AGAGCCCTCA AGGGCATGTG GCAGAACCTC ATGGACATCA CAAGACCATC AGTCTGAATC CAGGTCGTGG GGGCTGTCAT 002960 002961 AGCCGAACTC CTTCTGCACA TCCAGAGGGT ACTTGCTCCA CATCCGCTGT CTGCTGCTGC CTCTTTCCTC CTCACTCAGG 003040 003041 CTGTTGTAGT CAGCAGAGCC TAGAATGACA TCCCGGGAGT GGATTCTAAA TGTGATTTTC CTAGGCTACT GCAGGAGCCC 003120 003121 CTTCTCTTCT CAGAAAGGTC TGTTTTTGTT CCCGATTGTA ATGCAAAATC CTTGCTCAAT AAATAAAAAA GAATATAGAA 003200 003201 TTCTTTTTTT TTTAAAGAAG GAATCACTTT CCTATCATCT AAACCAAGTT CCTTCACACT GGAGTATTTT GTCACTTCTC 003280 003281 CCCTCCGTGG AGTATTTTGT CACTTCTCCC CTCCGTATAG GATTTTTTGT TGTTGTAAGA GTTGTAGTCA TATTGTAAAT 003360 003361 ATTTTTGTAC CTTTCTCCTT TTAACGTGTT ATTGACAAAC CTCCCCAAAA GAATATGCAA TTGTTTGATT CATTTCTCTG 003440 003441 TTATCAGACA CCAATAAATT CTTTTTGTTG GGC |
Predicted Small Protein
Name | NONHSAT143238_smProtein_1034:1255 |
Length | 74 |
Molecular weight | 7979.0294 |
Aromaticity | 0.150684931507 |
Instability index | 46.5917808219 |
Isoelectric point | 4.41802978516 |
Runs | 10 |
Runs residual | 0.00715863897481 |
Runs probability | 0.0571718777601 |
Amino acid sequence | MSSSFHFWMVTAFFPSVLDTDFSQDPLFGSEARGSLQHSSFMVELISASSLLSVSLNPFP GVLIIPFAVSTVY |
Secondary structure | LLLLEEEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHEEELLLLEEEELLLLL LEEEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHH HHHHHHHHHHLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTT TTTTTTTTTTooo |