NONHSAT143916
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT143916 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2087 nt |
Genomic location |
chr16-:81009698..81032554 |
Exon number |
3 |
Exons |
81009698..81010076,81015411..81015482,81030919..81032554 |
Genome context |
|
Sequence |
000001 tttgaggtat gttcttcagt gcctagtttg ttgagggttt ttatcatgaa gggatgttgg attttatcaa aggctttttc 000080
000081 gcatctattg agataatcac atggtttttg tgtttaattc tgtttgtgtg gagaatcaca tttattgatt tgcgtatgtt 000160 000161 gaaccctata tatatgtttt ttgactggct tatttcattc agaatgtcct cacatttcat ccatgttgta gcatatgcca 000240 000241 gaatttcctt ccattttaag gctgaatagt attccattgt atgtatatac cacattgtgc tgatccattg tctgttggac 000320 000321 tcttgggttg cttccatgtt ttaattattg tgaataatat gccgtgaaca tgggtgttca aatatctctt caaaaccctg 000400 000401 catttaattc ttatgaaaat atagccggaa gtggaattgt tggatcatat ggtaatttca tttttaattt tttgaggaac 000480 000481 tgctatacca gtttccacag tggctatccc agtttacatg cccgcccaca gtgcgcagga gtttcagttt ctccacatcc 000560 000561 tctttagcgt ttgttatttt ctgttttttt ttcagcagta gccatcctaa tggatatggg ttggttcctg ttttctattt 000640 000641 gGAACTTTAA AAAAAATTAA AGCAGGTAAT CGGTTCTTTC TTTTGGTAAT CATTTCTGAG TTAGAGTAGG TTAAGCCCAg 000720 000721 gtggggcacg gtagctcatg cctgtcccaa cactttggga ggctgaggat cacttgagga caggagtttg aaaccagcct 000800 000801 gggcaacata gcaagacccc tgactacaaa aaaaaaaaaa aaaAAAGAAC AGCTGCCCAT GATGTTTTTC CTTTGACCTT 000880 000881 GGCTGCTAAT TTTCCACCTT GTGGATGATC CAATTAAACT TAAGTTCAGG GATTTCAGCT TCATGTTTTC AGTGTAATAA 000960 000961 TTAGTTTTAT GGCTATATCT GTTAAATTTG AAATTTTTTT TCACAACTTC TGGTTTCATT TCATTGTTTA GTTTTTTTTT 001040 001041 CAGCCAGCTA TTAAGAAAAA AGCAATCTAT ATTCACACTA ATATGAGACT AATGACCCTT TAACCCTCAG AATAATATAC 001120 001121 ATTTTAAAAT AATAAGCCAA TTCTCTTAAT TGGTAGAATT TCATCTGAAC AAAATGAGTT GTTAATTTCG AGAATGTGGC 001200 001201 GAAAATATTT GAAGTCAGGC TTATTAATAT AAGCAAGCTG TTTCTGCTTT AGTGCTTATT TCCGGGATTG GGTCTCTTGA 001280 001281 GGCTTCCTGC TTTTCTCCTG AACCTGTAGG TTCTCTAAAT ACTACTGATA ACTTGCTGAA TATCTTAAAT CATTGAatta 001360 001361 gaaagctttg tctcaagttt aataatttgc ctgaggtcac acagctggtt aatggTTAAC ATACTTCTCT GATAAAGGTC 001440 001441 ACTAGAGGTT CTTATGAAGA TACTTTTAGG TGGCGTAACA AATGTGTTTA TGCATATTCA AGACACTCTT GTATCCACAG 001520 001521 GTTGCACTGC TGTGATCCAT CCTCATCTCC TAAAGATGCA TCCTGACTTA TCTCCACACT TGCACACTGA AGAATGCAAC 001600 001601 GTCTTGATTA ACTTGCTTAA GGAATGTCAC AAAAATCACA ACATTCTGAA ATTTTTTGGT TATTGTAATG ATGTTGATCG 001680 001681 GGAGTTGAGA AAATGCCTGA AGAATGAGTA CGTAGAAAAC AGGACCAAGA GCAGGGAGCA TGGCATTGCA ATGCGAAAGA 001760 001761 AACTTTTTAA TCCTCCAGAG GAATCCGAAA AATAAATTGT ATTTTCACTC GATGCCTTGG CTGAGAGAAG ACCTAAAGAC 001840 001841 TCTGGGTTGA TACCTGAAAG AATCCTGTCT TATTTGGTCT CCATAATCCT TTGAATGGAA AGTGACCTGT GAGAGATTGA 001920 001921 ACCATGGAGA AATATGAAAA CCCTGGATTC TGAGTATTTG TTGGGCAGGG CGTTTAGTAC TGTCTCCCCT TTACCAGCAA 002000 002001 ACCTGACTTC ACCATGTTTA TTCCCTTTGC CTACAACCAG TTAATATCTG AGTAACTTAT CTCCTTCaat aaaataattt 002080 002081 aaataat |
Predicted Small Protein
Name | NONHSAT143916_smProtein_53:268 |
Length | 72 |
Molecular weight | 8717.4042 |
Aromaticity | 0.239436619718 |
Instability index | 41.261971831 |
Isoelectric point | 7.98114013672 |
Runs | 7 |
Runs residual | 0.0499629355078 |
Runs probability | 0.0086430968784 |
Amino acid sequence | MLDFIKGFFASIEIITWFLCLILFVWRITFIDLRMLNPIYMFFDWLISFRMSSHFIHVVA YARISFHFKAE |
Secondary structure | LHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHLLLEEEEEE EEEEEEEEELL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH LLLLLLLLLLL |
PiMo | iiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooTTTTTTTTTTTTTTTTTTTTT iiiiiiiiiii |