NONHSAT144106
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144106 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1997 nt |
Genomic location |
chr16+:85170756..85183049 |
Exon number |
3 |
Exons |
85170756..85170815,85177424..85177547,85181229..85183049 |
Genome context |
|
Sequence |
000001 GGGAGGAGCA GCCCATTTCC AAGCCGGGAT GCAGTTCCAG GGCAGGCAGT AGAGGCCCAG GTGCAACCCC CAGCCCAGGA 000080
000081 GGAGACTTGA CTCGCCTGAG GTCAGCTGGA GCCAGGAACA CCTTTGTGCA ACAGCTGCCG TGGCCCATCT GTGAGAGACA 000160 000161 CGTGGACCCC GTGCCTCGAA ACAGGCAGTG TTGTAAGCAC GGGGACAGAG ACGTACGTGA GCAGATGGAA CCCCCGAAGA 000240 000241 CCTGCAGCTG TCATCCTGGG ACTGTGTGCC CGGCACTGTG CTAAATGCTC CCTGGGGCAT CTCGTGTAAC CTTTGCAGGA 000320 000321 ACCCTAAAAA CGACGATCAG ATTAGCCTCC TCCTCTTGAA AATGGAGACA AAATTCAAAT AACATAAACT TCACCACTTT 000400 000401 AACCATTTTA TTTTATTTAC ATATTTTTTT TGAGACAGAG TCTCGCTCTG TTGCCAGGCT GGAGTGCAGT GGTGCGATGT 000480 000481 AGGCTCTCTG CAACCTGGGC CTCCCGGGTT CAAGCAATTC TGTCTCAGCC TCCCGCGCAG CTGGGACTGC AGGGGTGTTC 000560 000561 CACCACACCC AGCCAATTTT TGTATTTTTA GTAGAGACAG GGTTTCCACA TGTTGGCCAG GATGGTTTCG GTCTCTTGAC 000640 000641 CTCATGATCT GCCCGCCTTG GCCTCCCAAA GTGCTGGGAT TACAGGCATG AGCCACTGCA CCTGGCCCAC TTTAACTATT 000720 000721 TTAAAGGGTA CAATTCAGTG GCGTTCAGTG CAGTCATGAG GTTGTGCAGC CACCACCTGT ATCTCATTTC AGAATATGCC 000800 000801 CATCACTCCA AAAGGAAAAC CCTATCCCCA CGATCCGTGG TTCCCCAGCC CCCTGGCCCC CAGCCCTAAG CAGCCACTAA 000880 000881 GCTGCCTTCT GTCTCTACGG ATTGCCGGTT TTGGGTATTT CATGTCGATG GGATCAGTGT GTGGCCTTGT GTCTGGCTTC 000960 000961 TGTCTCCAGG CATATGTTGT CAAGGGCTAT CATTCCTTTT CTTGGCCAAA TAATGCTCCA TGTTGTGGAC ACATCGTATT 001040 001041 TTGTTTATCC GTTCACCTGC TGATGCATGC CAGATGGTTG TTTCCAACTT TTTAATTCCC ATTATAAAGA TAAGGAAACT 001120 001121 GGCCAGGTGC GGTGGCTCAA GCCTGTAATC CCAGCACTTT GGGAGGCCAA GGCGGGTGCA TCACCTGAGG TCGGGAGTTT 001200 001201 GAGACCAGTC TGACCCACAC AGCGAAACCC CGTCTCTACT AAAAATACAA AAAATCAGCT GGGCGTGGTG GTGTGAGCCT 001280 001281 GTAATCCCAG CTACTCAGAA GGCTGAGGCA TGAGAATCAC TTGAACCTGG GAGGCGAAGG TTGCAGTGAG CTGAGATCGC 001360 001361 GCCACTGCGC TTCAGCCTGG GAGACAGAGA CTCTGTCTCT AAATAAATAA ATAAACAAAC AAATAAATAA ATGTAAACTG 001440 001441 AGGCTAAACC GCTCCACTCA GGGTCAACAC CTGCCCTGTG ACCCAGCAGT TCCACTTTTC GGTATTTATC TAGGAGAAAT 001520 001521 GAGAACACAT GTCCACACAA AGACCTGTGC ACAAATGTTC ACAGCATCTT TCTCTGTAAT AACTTCGAGC TGGCAACGAT 001600 001601 CCAAATATCC ATCCACAGGA GCTGGGTAAA CAAACCGTGG TGTCATCCTG GAGTGGGACG CTCCTCATCA GGAAAGAGGA 001680 001681 AAGAATGACC CATGCACGCA GCAGCTTGGA AGAGTCTCAA AAACAAGATG CCAATGAAGG AAGCCAGGCA CGGGACTGCA 001760 001761 ACTGTAAGCT GTGACTCTGT GTGACTCCAG CGGTACGAAC TTCCAGGAAA AGCAAAAATA TGGGACAGAG TATCCACAAG 001840 001841 TGGCATTCAG GGACTGGAGT GGGAACTGGC AGGGAAAGGG GAAATGTATT GATTATTTCG ATTGCAGTGG TGGGGAGGAG 001920 001921 GGTGGACACC TGTGCCAAAC TCACTTAAAA CGGATGTATT TTATTGTATA AATTATGCCT CAATGAAATC CATTCAT |
Predicted Small Protein
Name | NONHSAT144106_smProtein_1019:1147 |
Length | 43 |
Molecular weight | 4756.7719 |
Aromaticity | 0.0714285714286 |
Instability index | 45.7571428571 |
Isoelectric point | 10.8598022461 |
Runs | 6 |
Runs residual | 0.0333031946956 |
Runs probability | 0.0120414532179 |
Amino acid sequence | MLWTHRILFIRSPADACQMVVSNFLIPIIKIRKLARCGGSSL |
Secondary structure | LLLHHHEEEELLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooo |