NONHSAT144495
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144495 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2805 nt |
Genomic location |
chr16+:89296128..89298984 |
Exon number |
2 |
Exons |
89296128..89296149,89296202..89298984 |
Genome context |
|
Sequence |
000001 TGATCCTGTG TGAGCAGCGT AGGCTCTGGT TGGTTAGTCT TAGGTATCCA GATGTGATCC TGTGTGAGCA GCGTAGGCTC 000080
000081 TGGTTGGTTA GTCTTGAGGA TCCAGATGTG ATCCTGTGTG AGCAGCGTAG GCTCTGGTTG GTTAGTGTTG AGGATCCAGA 000160 000161 TGTGATTCTG TGAGCAGTGT AGGCTCTGGT TGGTTAGTCT TGAGGATCCA GATGTGATCC TGTGTGAGCA GTGTAGGCTC 000240 000241 TGGTTGGTTA GTCTTAAGTA TCCAGATGGG ATCCTGTATG AGCAGCGTAG GCTCTGGTTG GTTAGTCATG CTCTTAGGCA 000320 000321 TGACCCACCT GTAGGGTCCC ACACTGGCCA ATGTTGGGGC ATAACACAGC TCTACAtttt atgaaaatgc ccttgttcct 000400 000401 ctcccatacc tgatcccttc agataaaaca ccagggtgca aggaggggca gagtggagag gggcgaggtc tgtaccctga 000480 000481 gatgcccccg tttcatggcc gtggagggag aaccaccacc ccccacgtgg ggaggAGGGA ATTCCTGTAC CTTAGGCAGT 000560 000561 GCCGGACGGG TGAGAGCCCT GAGTGTCCTT GTTGACCTCC AGATCCTCTT CACAGCATGC AGAGCGGTCC TGGCAGCTGC 000640 000641 TGCAATCTGG CACTCCTGGG GCAGCTGCTG CGATCCGGCA CTGATGAGGC AGCTGCTGTG ATCCGGCATT CATGGGgcag 000720 000721 ctgctgcgac ccggcactcc tggggcagct gctgcttgtg tgtgtgctgc tcctttgtgt accatgaaaa cagaccaggg 000800 000801 acacggctgg tcctgatgtt ctgtggcgct tggccctgtc actggcgctt cttggatgag gcccttaaac acacacagtg 000880 000881 gcagagcaag acttcatgtg agtgacacga atgtgtgtcc tctggctgca gcaatcctgg gttatgtttt ttgtggccat 000960 000961 cagggcagca gctgcttggt gactgtttct gtggtgttga atccccacgg tataaaggta atctacaacg aggtgaacaa 001040 001041 taaatcctgg atGGACAGAC CCGTGCACCT TCATATTACG TGTTTGAAAT CCTGGATGGA CAGACCCGTC CACCTTCATG 001120 001121 TCACGTGTTT GAAATTCTGG ATGGACAGAC CCATGCACCT TCATGTTACG TGTTTAAAAT TCTGGATGGA CAGACCCGTG 001200 001201 CACCTTCCTG TCACATGTTT GAAATCCTGG ATGGACAGAC CTGTGCACCT TCATGTCACG TGTTTGAAAT TCTGGATGGA 001280 001281 CAGAGCCATG CACCTTCATG TTACGTGTTT GTTGTGGAGA GGAGTGGGTT GTGCCATGTT TCTCTTGTGG GATTGAGTGT 001360 001361 GGCTATTTAG CTCATCTGTT GCCACCTTTA ATTGTTGGCA TTGACACTAA AGGTCATCAG ATTAGCGGGA ACCAGCTTGT 001440 001441 GGGGTTGTAG CGGCTCCTGG ACTGGTCTCA GGTGACATCC TGATTGGCTG AAATAAGTCC TGCAGGTCTC TGCTAGAACT 001520 001521 GACTCACAGT TGCCTGAGTC CAGAACTTGT GGGTCACAGG TGACGCCAGG ACTGCATCAT CCTGGTGCTC GGACTCCTAG 001600 001601 TGACAGCATC CTGAGCAGGC GGTAGCCCAG ACACCACCCT GCCTGATATG CCCACTGTTG GTGGAGACAT CACCCCAGCA 001680 001681 CAGACCTCAA TTAAGACGAC TACCCCTCCG Acgactcccc ctcccttcac tggaggtgac ttcacgcact tcttcagaac 001760 001761 ctcctcagca gcgatgccca tggactgggg ttcctaaggc acaaatttga tatttgagat tctgtgatga gctgagcttg 001840 001841 ctgtccgcta acccgtgatc ctggtgtaat ctcaaccaaa acccacagcc ctgcacccct tgcctgtagg aaaatctggt 001920 001921 aggagttagt agtgtctgtg aagtctcaat aattgatacc aaaatgtttt gtttcaccag gaggtgcccg cctcctatca 002000 002001 gcctctggga aggccactgt ctccccagtg ccttctcctc cgctgcagct ttccatctca tctcctTACT CCCTTGACTT 002080 002081 GGCTTCACAC AGAGCCTCTT CTTTACACAT ACTAACTGTT TGCTTCATAC CCTCCTGCAG CAGAACTACA GACCTGCCAT 002160 002161 CCTGATAATT GTCAAACTCA TCCCTTTATC ACCTTtataa ctcctcaagg atattatcat tggaccccca acatttcaaa 002240 002241 gtgattttct tgagtaatac catatgctgt gatgtggatg tgattggttt gccctcatca agtctcatgt tgagctttga 002320 002321 ccctcagtgt ggcagtgctg ggagggggcc tggtgggggt ttgggtcatg ggggcaccct cctgaatggt tggataccat 002400 002401 tcattcttgc tgtgtcaagc ctggattggt ttgtagggga atgcactagt tactgggagc atggttgtga taaagccaag 002480 002481 ccgtccctcg ggtttggctc actgcccttg accttctctg ccctgtttga cacagcaaat agtcctcacc agaagcaggt 002560 002561 cagatgccag tgctatgctt gcacagcctg ctgaaccatg agccaaataa gcctctttct aagttaccca cagcctcaga 002640 002641 tatgtagcaa cacagacaga ctaagacacc aagcatgatg gaaaactggg ttatgggcag gactgcaagt actggttagg 002720 002721 cagatacctg tatttctctt cctaactctc agaacgtgtt ctgtgtcact tagggcaact tatgccctcc tgtgtgaaaa 002800 002801 tctcc |
Predicted Small Protein
Name | NONHSAT144495_smProtein_2306:2593 |
Length | 96 |
Molecular weight | 10030.2904 |
Aromaticity | 0.115789473684 |
Instability index | 47.6515789474 |
Isoelectric point | 6.22161865234 |
Runs | 11 |
Runs residual | 0.0132615002072 |
Runs probability | 0.0387660387661 |
Amino acid sequence | MLSFDPQCGSAGRGPGGGLGHGGTLLNGWIPFILAVSSLDWFVGECTSYWEHGCDKAKPS LGFGSLPLTFSALFDTANSPHQKQVRCQCYACTAC |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLHHHHHLLLEEEEEEEELLLLLLLLLLLHHHLLLLLLLLL LLLLLLLLEEELLLLLLLLLLLLEEEEEEEEEELL |
PRMN | - |
PiMo | - |