NONHSAT145936
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT145936 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1065 nt |
Genomic location |
chr17+:16342301..16345340 |
Exon number |
6 |
Exons |
16342301..16342374,16342641..16342728,16342974..16343017,16343425..16343567,16344388..16344444,16344682..16345340 |
Genome context |
|
Sequence |
000001 GGATTGGGAT ATTCCGACTC CTTAAGGGCC TGGCGCACAT AAGGTGTGAC CTTTTCATTC CCGTTGTTAT GGAGGGCCAC 000080
000081 ATCTGCCAGA GCCTGGAGTC TGCGAAGGCC GGGACCCGGT TCCCCGGCCC ACAGTGGGGG TGTGCAAACC CGAGAGAACT 000160 000161 GGATTGCGTA CCCACTGCAG AGTGCTGAAG ACGGGGTAGC CACGAGTCAA GTCTTCACCA CTTGCTGGTT CCCAGGAGTA 000240 000241 AACTTGTTTG AACGGTGACC TAATTGCTAT ATTCACCTAG GTTGCAAATT CGTGAAGAAT CAGCATCATG TTTGGCAGCT 000320 000321 GAGTATTGGA GCCAGGAGCC TGCCATGAGG TTTTGAGAAC AGAGTGCTGT TTTAGAGCTG GCAGCAGCAT CTCAGCCCAA 000400 000401 GAGAAGGTTA TATTCCCAGA GGATGTCAGT CCCAAGGACC AGTAGCTGCC ATCAGTTTGG ATTCTGAAAA CTAACTGGCA 000480 000481 TCAACACTGG GTGTAGAAAC ATGCTTGCCT TATGTATCAG AGGACATGCT CAGCAGATCC AAGAGATATA TTTGGCAACT 000560 000561 TTTTCTAGAA AAGGCACATT GGGTATCATT CATTACATTC TTGAGTTTTT TTGGGTTTTT TTTTTTTTTT TTGAGACAGT 000640 000641 CTTGCTGTAT TGCCCAGGCT GGAGTGTGGT GGCACAATCA CAGCTCATTG CATCCTCAAT CACCCAGGCC TAAGCAATCC 000720 000721 TCCCACCTTG TAGCTGGGAC TACAGCTCAC AGCACACCTG GCTAAAATTT TTTTTTTGTT GAGACGGATT CTCTATGTTG 000800 000801 CCCAGGCTGG TCTCAGGCTC CTGGGCTCAG ATGGTCCTCC TGCCTCAGCT TCCAAAGGCA CAGGCCAAGT TGTAGCTTTG 000880 000881 TCCCTTGCCA TCATGCCCAA CAAGAGGTTC TATACCTTTT AATGAATTGA CTTTCATAAA TTGGTTATGT TGGTGGGCAA 000960 000961 AGTTCTTTAA GCTGGAAATT GTAAATTCCT CCTGAAATGT TTTTTCATGC AGTTACCATG AACTAATACT ACAATAAAGG 001040 001041 ATGGTCTTGG GTGTCAATTC TTGAA |
Predicted Small Protein
Name | NONHSAT145936_smProtein_500:712 |
Length | 71 |
Molecular weight | 8064.4019 |
Aromaticity | 0.185714285714 |
Instability index | 42.57 |
Isoelectric point | 6.69317626953 |
Runs | 9 |
Runs residual | 0.0162659123055 |
Runs probability | 0.015692162751 |
Amino acid sequence | MLALCIRGHAQQIQEIYLATFSRKGTLGIIHYILEFFWVFFFFFETVLLYCPGWSVVAQS QLIASSITQA |
Secondary structure | LHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHEEELLLLEEEHHH HHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooooo oooooooooo |