NONHSAT145936

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT145936

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1065 nt

Genomic location

chr17+:16342301..16345340

Exon number

6

Exons

16342301..16342374,16342641..16342728,16342974..16343017,16343425..16343567,16344388..16344444,16344682..16345340

Genome context

Sequence
000001 GGATTGGGAT ATTCCGACTC CTTAAGGGCC TGGCGCACAT AAGGTGTGAC CTTTTCATTC CCGTTGTTAT GGAGGGCCAC 000080
000081 ATCTGCCAGA GCCTGGAGTC TGCGAAGGCC GGGACCCGGT TCCCCGGCCC ACAGTGGGGG TGTGCAAACC CGAGAGAACT 000160
000161 GGATTGCGTA CCCACTGCAG AGTGCTGAAG ACGGGGTAGC CACGAGTCAA GTCTTCACCA CTTGCTGGTT CCCAGGAGTA 000240
000241 AACTTGTTTG AACGGTGACC TAATTGCTAT ATTCACCTAG GTTGCAAATT CGTGAAGAAT CAGCATCATG TTTGGCAGCT 000320
000321 GAGTATTGGA GCCAGGAGCC TGCCATGAGG TTTTGAGAAC AGAGTGCTGT TTTAGAGCTG GCAGCAGCAT CTCAGCCCAA 000400
000401 GAGAAGGTTA TATTCCCAGA GGATGTCAGT CCCAAGGACC AGTAGCTGCC ATCAGTTTGG ATTCTGAAAA CTAACTGGCA 000480
000481 TCAACACTGG GTGTAGAAAC ATGCTTGCCT TATGTATCAG AGGACATGCT CAGCAGATCC AAGAGATATA TTTGGCAACT 000560
000561 TTTTCTAGAA AAGGCACATT GGGTATCATT CATTACATTC TTGAGTTTTT TTGGGTTTTT TTTTTTTTTT TTGAGACAGT 000640
000641 CTTGCTGTAT TGCCCAGGCT GGAGTGTGGT GGCACAATCA CAGCTCATTG CATCCTCAAT CACCCAGGCC TAAGCAATCC 000720
000721 TCCCACCTTG TAGCTGGGAC TACAGCTCAC AGCACACCTG GCTAAAATTT TTTTTTTGTT GAGACGGATT CTCTATGTTG 000800
000801 CCCAGGCTGG TCTCAGGCTC CTGGGCTCAG ATGGTCCTCC TGCCTCAGCT TCCAAAGGCA CAGGCCAAGT TGTAGCTTTG 000880
000881 TCCCTTGCCA TCATGCCCAA CAAGAGGTTC TATACCTTTT AATGAATTGA CTTTCATAAA TTGGTTATGT TGGTGGGCAA 000960
000961 AGTTCTTTAA GCTGGAAATT GTAAATTCCT CCTGAAATGT TTTTTCATGC AGTTACCATG AACTAATACT ACAATAAAGG 001040
001041 ATGGTCTTGG GTGTCAATTC TTGAA
[back to top]

Predicted Small Protein

Name NONHSAT145936_smProtein_500:712
Length 71
Molecular weight 8064.4019
Aromaticity 0.185714285714
Instability index 42.57
Isoelectric point 6.69317626953
Runs 9
Runs residual 0.0162659123055
Runs probability 0.015692162751
Amino acid sequence MLALCIRGHAQQIQEIYLATFSRKGTLGIIHYILEFFWVFFFFFETVLLYCPGWSVVAQS
QLIASSITQA
Secondary structure LHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHEEELLLLEEEHHH
HHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLL
LLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooooo
oooooooooo