Difference between revisions of "B4GALT1-AS1"
Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== B4GALT1-AS1 ===Approved Name=== B4GALT1 antisense RNA 1 ===Previous Symbols=== _ ===Synonyms=== _ ===Chromosome=== 9p21.1 ===Re...") |
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==Annotated Information== | ==Annotated Information== | ||
===Approved Symbol=== | ===Approved Symbol=== | ||
| − | B4GALT1-AS1 | + | B4GALT1-AS1 （B4GALT1 antisense RNA 1） |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
===Chromosome=== | ===Chromosome=== | ||
9p21.1 | 9p21.1 | ||
| + | [[File:Map locations of alternative promoters of divergently-paired head to head genes, B4GALT1 and B4GALT1-AS1.jpg|right|thumb|400px|''' Map locations of alternative promoters of divergently-paired head to head genes, B4GALT1 and B4GALT1-AS1 '''<ref name="ref1" />.]] | ||
===RefSeq ID=== | ===RefSeq ID=== | ||
NR_108108 | NR_108108 | ||
| − | |||
| − | |||
===Ensembl ID=== | ===Ensembl ID=== | ||
ENSG00000233554 | ENSG00000233554 | ||
| − | === | + | ===Function=== |
| − | + | B4GALT1-AS1 functions as an antisense transcript and has the potential to control the expression of two B4GALT1 transcripts.<ref name="ref1" /> | |
| + | |||
| + | ==Labs working on this lncRNA== | ||
| + | * Department of Biomedical Sciences, School of Pharmacy, Texas Tech University Health Sciences Center, Amarillo, TX 79106, USA. | ||
| + | * Biomedica, LLC, Sterling Heights, MI, USA. | ||
| + | |||
| + | ==References== | ||
| + | <references> | ||
| + | <ref name="ref1"> Al-Obaide MA, Alobydi H, Abdelsalam AG, Zhang R, Srivenugopal KS. Multifaceted roles of 5'-regulatory region of the cancer associated gene B4GALT1 and its comparison with the gene family. Int J Oncol. 2015 Oct;47(4):1393-404. doi:10.3892/ijo.2015.3136. | ||
| + | </ref>(1) | ||
| + | </references> | ||
| + | |||
===Sequence=== | ===Sequence=== | ||
>gi|564473413|ref|NR_108108.1| Homo sapiens B4GALT1 antisense RNA 1 (B4GALT1-AS1), transcript variant 1, long non-coding RNA | >gi|564473413|ref|NR_108108.1| Homo sapiens B4GALT1 antisense RNA 1 (B4GALT1-AS1), transcript variant 1, long non-coding RNA | ||
<dnaseq>GTTCGAAACCCCCTCCCTAACTCAGCCCGGCTGGACCCCGCTGCTTAACGGGGGGTCCTGCGGCAAAGAAAGTGGACGGGTTGCCACTTCTGTGCCTCCCCATCAGGTAGCCTGGGCTATAAGGGGCTCTCAGACCAGCTTGGTTCCAGATGTGTGTGTGGCGGGAGTCCTGTATACTTTGAAGAGGAGAGCAGCAAGAAGCCTCTAACTCCCAGGCCAGCGTGCAGGAGATCAGCCGGCGTTACAGTCTACACTGGGCTACCCACTGTCCCATGAAGTAGCAGTTCTCCCCATGTCGTAGAGTGGGGCCCCGGCAGATTAAGAAACTTTCCTAAGAGCCCACAGCTGGCAAGAGGCAGAATTCTGGCTCCGAAACCCATGTTTTCTACAGGTTTACCCTTTGTTGATTTGCAAGGGTTGGGAAACTAGTTTCCATGGCCAAACCTAGCCCACCGTCTGTTTTGGTGTCCATGGATTGGCGGGGACAGCTCTGCTTAAGGATGTAGTAGCTCTGCAGGTTGGCTAGTTTCCTGTTCTTCCCAACCTGCGCTATGGACTTCATCAGATTTCAGCATCAGAGAGAATATGGAAGGACATCGACCCTAACTTCATCCAGTGAGGATTTCCACACACCATACACTCTCTGAGAGTTCTCTTGGCTTTGTGTGCACACCTCCAGTGACAGGGAGCTCGCTATGTCATGAGGCAGCCTGCTCCCTTGTGGCTATCACTGAACCAACTATTAAGCCTTCTTATACAAACAGTCCCTGACTTACTGTTAGACTTACAACTTTTTGATTTTACAGTGGTGCAAAAGCAATATGCATTCCATAGAAACTGTATTTCAAATTTTGAATTTTGATCTTTTCCAGGCTAGCAACATATGAAGACCAACCTTCTATTTTTAAAATAGGCTTTGTGTTAGATGCTTTTGCCCAACTATAGGTTAATGTAAATGTTCTGAGAATATTTGAGGAAGGCTAGGCTAAACTGTGATCTTTGGGAGCTTAGATATGTTAAGTGCATTTTCAACTTACAATATTTTCAACTTACGATGAGTTTATTGGGATGAAGCCCGTTGTAAGTAAAGGAGCATCTGCATTAAGCTAAAATCCATGTCTATAACTTCCTCAGTAATATCAAGTTTGTTCCTTGGAGCCAGAGAATAAACTGAATCCTTTTCCA</dnaseq> | <dnaseq>GTTCGAAACCCCCTCCCTAACTCAGCCCGGCTGGACCCCGCTGCTTAACGGGGGGTCCTGCGGCAAAGAAAGTGGACGGGTTGCCACTTCTGTGCCTCCCCATCAGGTAGCCTGGGCTATAAGGGGCTCTCAGACCAGCTTGGTTCCAGATGTGTGTGTGGCGGGAGTCCTGTATACTTTGAAGAGGAGAGCAGCAAGAAGCCTCTAACTCCCAGGCCAGCGTGCAGGAGATCAGCCGGCGTTACAGTCTACACTGGGCTACCCACTGTCCCATGAAGTAGCAGTTCTCCCCATGTCGTAGAGTGGGGCCCCGGCAGATTAAGAAACTTTCCTAAGAGCCCACAGCTGGCAAGAGGCAGAATTCTGGCTCCGAAACCCATGTTTTCTACAGGTTTACCCTTTGTTGATTTGCAAGGGTTGGGAAACTAGTTTCCATGGCCAAACCTAGCCCACCGTCTGTTTTGGTGTCCATGGATTGGCGGGGACAGCTCTGCTTAAGGATGTAGTAGCTCTGCAGGTTGGCTAGTTTCCTGTTCTTCCCAACCTGCGCTATGGACTTCATCAGATTTCAGCATCAGAGAGAATATGGAAGGACATCGACCCTAACTTCATCCAGTGAGGATTTCCACACACCATACACTCTCTGAGAGTTCTCTTGGCTTTGTGTGCACACCTCCAGTGACAGGGAGCTCGCTATGTCATGAGGCAGCCTGCTCCCTTGTGGCTATCACTGAACCAACTATTAAGCCTTCTTATACAAACAGTCCCTGACTTACTGTTAGACTTACAACTTTTTGATTTTACAGTGGTGCAAAAGCAATATGCATTCCATAGAAACTGTATTTCAAATTTTGAATTTTGATCTTTTCCAGGCTAGCAACATATGAAGACCAACCTTCTATTTTTAAAATAGGCTTTGTGTTAGATGCTTTTGCCCAACTATAGGTTAATGTAAATGTTCTGAGAATATTTGAGGAAGGCTAGGCTAAACTGTGATCTTTGGGAGCTTAGATATGTTAAGTGCATTTTCAACTTACAATATTTTCAACTTACGATGAGTTTATTGGGATGAAGCCCGTTGTAAGTAAAGGAGCATCTGCATTAAGCTAAAATCCATGTCTATAACTTCCTCAGTAATATCAAGTTTGTTCCTTGGAGCCAGAGAATAAACTGAATCCTTTTCCA</dnaseq> | ||
Latest revision as of 14:05, 8 December 2017
Contents
Annotated Information
Approved Symbol
B4GALT1-AS1 （B4GALT1 antisense RNA 1）
Chromosome
9p21.1
Map locations of alternative promoters of divergently-paired head to head genes, B4GALT1 and B4GALT1-AS1 [1].
RefSeq ID
NR_108108
Ensembl ID
ENSG00000233554
Function
B4GALT1-AS1 functions as an antisense transcript and has the potential to control the expression of two B4GALT1 transcripts.[1]
Labs working on this lncRNA
- Department of Biomedical Sciences, School of Pharmacy, Texas Tech University Health Sciences Center, Amarillo, TX 79106, USA.
- Biomedica, LLC, Sterling Heights, MI, USA.
References
Sequence
>gi|564473413|ref|NR_108108.1| Homo sapiens B4GALT1 antisense RNA 1 (B4GALT1-AS1), transcript variant 1, long non-coding RNA
000001 GTTCGAAACC CCCTCCCTAA CTCAGCCCGG CTGGACCCCG CTGCTTAACG GGGGGTCCTG CGGCAAAGAA AGTGGACGGG 000080
000081 TTGCCACTTC TGTGCCTCCC CATCAGGTAG CCTGGGCTAT AAGGGGCTCT CAGACCAGCT TGGTTCCAGA TGTGTGTGTG 000160
000161 GCGGGAGTCC TGTATACTTT GAAGAGGAGA GCAGCAAGAA GCCTCTAACT CCCAGGCCAG CGTGCAGGAG ATCAGCCGGC 000240
000241 GTTACAGTCT ACACTGGGCT ACCCACTGTC CCATGAAGTA GCAGTTCTCC CCATGTCGTA GAGTGGGGCC CCGGCAGATT 000320
000321 AAGAAACTTT CCTAAGAGCC CACAGCTGGC AAGAGGCAGA ATTCTGGCTC CGAAACCCAT GTTTTCTACA GGTTTACCCT 000400
000401 TTGTTGATTT GCAAGGGTTG GGAAACTAGT TTCCATGGCC AAACCTAGCC CACCGTCTGT TTTGGTGTCC ATGGATTGGC 000480
000481 GGGGACAGCT CTGCTTAAGG ATGTAGTAGC TCTGCAGGTT GGCTAGTTTC CTGTTCTTCC CAACCTGCGC TATGGACTTC 000560
000561 ATCAGATTTC AGCATCAGAG AGAATATGGA AGGACATCGA CCCTAACTTC ATCCAGTGAG GATTTCCACA CACCATACAC 000640
000641 TCTCTGAGAG TTCTCTTGGC TTTGTGTGCA CACCTCCAGT GACAGGGAGC TCGCTATGTC ATGAGGCAGC CTGCTCCCTT 000720
000721 GTGGCTATCA CTGAACCAAC TATTAAGCCT TCTTATACAA ACAGTCCCTG ACTTACTGTT AGACTTACAA CTTTTTGATT 000800
000801 TTACAGTGGT GCAAAAGCAA TATGCATTCC ATAGAAACTG TATTTCAAAT TTTGAATTTT GATCTTTTCC AGGCTAGCAA 000880
000881 CATATGAAGA CCAACCTTCT ATTTTTAAAA TAGGCTTTGT GTTAGATGCT TTTGCCCAAC TATAGGTTAA TGTAAATGTT 000960
000961 CTGAGAATAT TTGAGGAAGG CTAGGCTAAA CTGTGATCTT TGGGAGCTTA GATATGTTAA GTGCATTTTC AACTTACAAT 001040
001041 ATTTTCAACT TACGATGAGT TTATTGGGAT GAAGCCCGTT GTAAGTAAAG GAGCATCTGC ATTAAGCTAA AATCCATGTC 001120
001121 TATAACTTCC TCAGTAATAT CAAGTTTGTT CCTTGGAGCC AGAGAATAAA CTGAATCCTT TTCCA
000081 TTGCCACTTC TGTGCCTCCC CATCAGGTAG CCTGGGCTAT AAGGGGCTCT CAGACCAGCT TGGTTCCAGA TGTGTGTGTG 000160
000161 GCGGGAGTCC TGTATACTTT GAAGAGGAGA GCAGCAAGAA GCCTCTAACT CCCAGGCCAG CGTGCAGGAG ATCAGCCGGC 000240
000241 GTTACAGTCT ACACTGGGCT ACCCACTGTC CCATGAAGTA GCAGTTCTCC CCATGTCGTA GAGTGGGGCC CCGGCAGATT 000320
000321 AAGAAACTTT CCTAAGAGCC CACAGCTGGC AAGAGGCAGA ATTCTGGCTC CGAAACCCAT GTTTTCTACA GGTTTACCCT 000400
000401 TTGTTGATTT GCAAGGGTTG GGAAACTAGT TTCCATGGCC AAACCTAGCC CACCGTCTGT TTTGGTGTCC ATGGATTGGC 000480
000481 GGGGACAGCT CTGCTTAAGG ATGTAGTAGC TCTGCAGGTT GGCTAGTTTC CTGTTCTTCC CAACCTGCGC TATGGACTTC 000560
000561 ATCAGATTTC AGCATCAGAG AGAATATGGA AGGACATCGA CCCTAACTTC ATCCAGTGAG GATTTCCACA CACCATACAC 000640
000641 TCTCTGAGAG TTCTCTTGGC TTTGTGTGCA CACCTCCAGT GACAGGGAGC TCGCTATGTC ATGAGGCAGC CTGCTCCCTT 000720
000721 GTGGCTATCA CTGAACCAAC TATTAAGCCT TCTTATACAA ACAGTCCCTG ACTTACTGTT AGACTTACAA CTTTTTGATT 000800
000801 TTACAGTGGT GCAAAAGCAA TATGCATTCC ATAGAAACTG TATTTCAAAT TTTGAATTTT GATCTTTTCC AGGCTAGCAA 000880
000881 CATATGAAGA CCAACCTTCT ATTTTTAAAA TAGGCTTTGT GTTAGATGCT TTTGCCCAAC TATAGGTTAA TGTAAATGTT 000960
000961 CTGAGAATAT TTGAGGAAGG CTAGGCTAAA CTGTGATCTT TGGGAGCTTA GATATGTTAA GTGCATTTTC AACTTACAAT 001040
001041 ATTTTCAACT TACGATGAGT TTATTGGGAT GAAGCCCGTT GTAAGTAAAG GAGCATCTGC ATTAAGCTAA AATCCATGTC 001120
001121 TATAACTTCC TCAGTAATAT CAAGTTTGTT CCTTGGAGCC AGAGAATAAA CTGAATCCTT TTCCA
