Difference between revisions of "ENST00000307533.6"

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sequence = <dnaseq>ACCGGCTCAGGTCCCCTTCTATTGTGGAAGCTTTGTTCTTTCTCTCTTTGCAATAAATCCTGCTGCTGCTCACTCTTTGGGTCCACACTGCCTTTATGAGCCGTAACAGGTCTGCAGTTTCACTCCTGAGCCGGCGAGACCACGAACCCACCAGAAGGAAAAAACTCCGAACACATCCGAACATCAGAAGGAACAAACTCCAGACGCGCCACTTTAAGAGCTGTAACACTCACCGCGAGGGTCCGTGGCTTCATTCTTGAAGTCAGTGAGACCAAGAACCCACCAATTCCGGACACATTGGGAACTTAGAGCAGTGCTTGGGACATGGTTATCAGCGTCAGATATTTCCTTAAACTAGCGTGAAGTCGACTTTAACCTTCCAGCAGTGTGAGTGAGGGCCCTGACCCTAGAATCAACGCCCAAAGAGCTGTGGCGCTACAGCGGGCGGGGACATGGGGTGCGCATGCGTGCGGGGGGGTACGCGTGCGTGCAAGTGCGCGTGCGCGCGCAGGACCGCTGAGGCGGGAGCCCCGAATGCGGTTCTCGCTTGCTGCGTGGCGGTAAAGGACCGCAGGTGTCGTAAAAGGGCCGCAGTGGCAGCGTCCTGGCCGACGGCTAGTAGCCCATTTTGGATACCGTCCTCGCTGCGGAAAGTTGGGGCAACCTGTTGCTAGTCTGGTCGTTGGTGACAGCGAGGCTTCCGCGCTCGCTGCTGGTGAGCAGCCCCGGCGTGCCCCGCGGGCTGGAAGAGGCGGCGGCGTGATGCGGCCCGTGGACGCGGACGAGGCGCGGGAGCCCCGCGAGGAGCCGGGCAGCCCGCTGAGCCCCGCGCCCCGCGCCGGCCGCGAGAACCTGGCCTCCCTGGAGCGCGAGCGCGCCCGGGCGCACTGGCGGGCCCGCAGGAAGCTGCTGGAGATCCAGAGCCTGCTCGACGCCATCAAGAGTGAGGTGGAGGCAGAGGAGCGGGGCGCCCGGGCCCCAGCACCCCGCCCGCGTGCGGAGGCTGAGGAGCGGGTGGCTCGGCTGTGCGCCGAAGCAGAGAGGAAGGCTGCGGAGGCGGCGCGGATGGGCAGGCGGATCGTGGAGCTGCACCAGCGGATCGCCGGCTGCGAGTGCTGCTGAGCCGGCGAGGCCGCGCGGGTCTGGAGCGGAGCGCGGCGGGGAGTGTCCCGCGTGGAAGGCGCTGGGTAGGCAGGGAGGGGAGCGCAGAGCCGTGCCACGCTCTCCGCGGAGTTGGTTTCATTCTTTTTTCATAGGTGGCCAACTGACGAACTGTGTTCACCTGATAAGGAGTCGTGGCTGCTTGGACAGGCTCAAACCAAGAGAGCCTTTCGTTTTGTCTCCCCTGTTTTTCTGCCTGCGTTTTCTCCACATTAGCCACTCAATTTCCAGTACCATCCTGGCGGATGACTTCAGCATTAGATGGTCAGGTGTATTTTTTTATTAATAGGCGCATTCAGTTTGGAAAAGACAGCTTTTCATTAATGTCCCACGTAAAGGAATATGGCCTATACAGTACGTACGCTGCTGCGTGGTCATATTTGTTCCTGTGATCTTATTGTATTTTCAAAGTTTGGAAGTATACTCGTGTGCTTTGCTGTTTTTTTATGCTTCCTGGAATTTGGGGACTCATGAGAGACTTGAGGTTAGAGTTCTGCAAGTGAGAAGACACTACATGGTTGCAGCTGCCACATGAAGAACCCAAGCTCCTGTCAAAGTTGTGAATGCGACTTTGGATGAGATTAAGAAGGCCCAGTGGACGGTTGGTCTTGAAGAGTGGCAGTGTGTGGATTTGAGGACCTCTGCAGACCATCAGATCAAAGGAGGGAGAGCTGTTTTGGGTGTTTTGTTTTTTTTGTTTTTATAGCATTTTGCTTTTTCTTGGAATGTAATTTTCCTATGGCATGTTAACTGGTGCACATCGTGTAACCTGTCTGGTGAGCAACCTACAATTGGGATGAGTTCTAGGTACATGTGTTTGCTGACTTTGGGGTAAACAACTTTGTTATAATACAGTCTCTGCCACAGATGCATGTGACCTCTTCAGGGGCCCAGAGTGGCTGAGGAAGGAAAGCTTCAAGCTGGCCATGGGGGTCCCAAACAGTCATTCCAGGCTTAGATGATGACTAGCCTAGGTCATCAGAGCCCAGACTCCACAGAGACTAAAATCAGAGCTCTGTCTTGTTATGATAAATTTCATTTGCTTGGAAAAAGAAATGCTGAAAGCCAGTGTTTAGAATCTTTGTGCAGATGACCAAAGCAATTGACTTGGCCAAGAAAAGGTAAGGTAAATAAACATTTTTCAAAATGA</dnaseq>|
 
sequence = <dnaseq>ACCGGCTCAGGTCCCCTTCTATTGTGGAAGCTTTGTTCTTTCTCTCTTTGCAATAAATCCTGCTGCTGCTCACTCTTTGGGTCCACACTGCCTTTATGAGCCGTAACAGGTCTGCAGTTTCACTCCTGAGCCGGCGAGACCACGAACCCACCAGAAGGAAAAAACTCCGAACACATCCGAACATCAGAAGGAACAAACTCCAGACGCGCCACTTTAAGAGCTGTAACACTCACCGCGAGGGTCCGTGGCTTCATTCTTGAAGTCAGTGAGACCAAGAACCCACCAATTCCGGACACATTGGGAACTTAGAGCAGTGCTTGGGACATGGTTATCAGCGTCAGATATTTCCTTAAACTAGCGTGAAGTCGACTTTAACCTTCCAGCAGTGTGAGTGAGGGCCCTGACCCTAGAATCAACGCCCAAAGAGCTGTGGCGCTACAGCGGGCGGGGACATGGGGTGCGCATGCGTGCGGGGGGGTACGCGTGCGTGCAAGTGCGCGTGCGCGCGCAGGACCGCTGAGGCGGGAGCCCCGAATGCGGTTCTCGCTTGCTGCGTGGCGGTAAAGGACCGCAGGTGTCGTAAAAGGGCCGCAGTGGCAGCGTCCTGGCCGACGGCTAGTAGCCCATTTTGGATACCGTCCTCGCTGCGGAAAGTTGGGGCAACCTGTTGCTAGTCTGGTCGTTGGTGACAGCGAGGCTTCCGCGCTCGCTGCTGGTGAGCAGCCCCGGCGTGCCCCGCGGGCTGGAAGAGGCGGCGGCGTGATGCGGCCCGTGGACGCGGACGAGGCGCGGGAGCCCCGCGAGGAGCCGGGCAGCCCGCTGAGCCCCGCGCCCCGCGCCGGCCGCGAGAACCTGGCCTCCCTGGAGCGCGAGCGCGCCCGGGCGCACTGGCGGGCCCGCAGGAAGCTGCTGGAGATCCAGAGCCTGCTCGACGCCATCAAGAGTGAGGTGGAGGCAGAGGAGCGGGGCGCCCGGGCCCCAGCACCCCGCCCGCGTGCGGAGGCTGAGGAGCGGGTGGCTCGGCTGTGCGCCGAAGCAGAGAGGAAGGCTGCGGAGGCGGCGCGGATGGGCAGGCGGATCGTGGAGCTGCACCAGCGGATCGCCGGCTGCGAGTGCTGCTGAGCCGGCGAGGCCGCGCGGGTCTGGAGCGGAGCGCGGCGGGGAGTGTCCCGCGTGGAAGGCGCTGGGTAGGCAGGGAGGGGAGCGCAGAGCCGTGCCACGCTCTCCGCGGAGTTGGTTTCATTCTTTTTTCATAGGTGGCCAACTGACGAACTGTGTTCACCTGATAAGGAGTCGTGGCTGCTTGGACAGGCTCAAACCAAGAGAGCCTTTCGTTTTGTCTCCCCTGTTTTTCTGCCTGCGTTTTCTCCACATTAGCCACTCAATTTCCAGTACCATCCTGGCGGATGACTTCAGCATTAGATGGTCAGGTGTATTTTTTTATTAATAGGCGCATTCAGTTTGGAAAAGACAGCTTTTCATTAATGTCCCACGTAAAGGAATATGGCCTATACAGTACGTACGCTGCTGCGTGGTCATATTTGTTCCTGTGATCTTATTGTATTTTCAAAGTTTGGAAGTATACTCGTGTGCTTTGCTGTTTTTTTATGCTTCCTGGAATTTGGGGACTCATGAGAGACTTGAGGTTAGAGTTCTGCAAGTGAGAAGACACTACATGGTTGCAGCTGCCACATGAAGAACCCAAGCTCCTGTCAAAGTTGTGAATGCGACTTTGGATGAGATTAAGAAGGCCCAGTGGACGGTTGGTCTTGAAGAGTGGCAGTGTGTGGATTTGAGGACCTCTGCAGACCATCAGATCAAAGGAGGGAGAGCTGTTTTGGGTGTTTTGTTTTTTTTGTTTTTATAGCATTTTGCTTTTTCTTGGAATGTAATTTTCCTATGGCATGTTAACTGGTGCACATCGTGTAACCTGTCTGGTGAGCAACCTACAATTGGGATGAGTTCTAGGTACATGTGTTTGCTGACTTTGGGGTAAACAACTTTGTTATAATACAGTCTCTGCCACAGATGCATGTGACCTCTTCAGGGGCCCAGAGTGGCTGAGGAAGGAAAGCTTCAAGCTGGCCATGGGGGTCCCAAACAGTCATTCCAGGCTTAGATGATGACTAGCCTAGGTCATCAGAGCCCAGACTCCACAGAGACTAAAATCAGAGCTCTGTCTTGTTATGATAAATTTCATTTGCTTGGAAAAAGAAATGCTGAAAGCCAGTGTTTAGAATCTTTGTGCAGATGACCAAAGCAATTGACTTGGCCAAGAAAAGGTAAGGTAAATAAACATTTTTCAAAATGA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:ENSG00000170846.11]][[Category:lnc-S100P-2]]
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[[Category:Intergenic]][[Category:ENSG00000170846.11]][[Category:lnc-S100P-2]][[Category:Transcripts]]

Latest revision as of 14:39, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000307533.6

Source

Gencode19

Same with

lnc-S100P-2:1

Classification

intergenic

Length

2311 nt

Genomic location

chr4+:6675178..6677774

Exon number

2

Exons

6675178..6676433,6676720..6677774

Genome context

Sequence
000001 ACCGGCTCAG GTCCCCTTCT ATTGTGGAAG CTTTGTTCTT TCTCTCTTTG CAATAAATCC TGCTGCTGCT CACTCTTTGG 000080
000081 GTCCACACTG CCTTTATGAG CCGTAACAGG TCTGCAGTTT CACTCCTGAG CCGGCGAGAC CACGAACCCA CCAGAAGGAA 000160
000161 AAAACTCCGA ACACATCCGA ACATCAGAAG GAACAAACTC CAGACGCGCC ACTTTAAGAG CTGTAACACT CACCGCGAGG 000240
000241 GTCCGTGGCT TCATTCTTGA AGTCAGTGAG ACCAAGAACC CACCAATTCC GGACACATTG GGAACTTAGA GCAGTGCTTG 000320
000321 GGACATGGTT ATCAGCGTCA GATATTTCCT TAAACTAGCG TGAAGTCGAC TTTAACCTTC CAGCAGTGTG AGTGAGGGCC 000400
000401 CTGACCCTAG AATCAACGCC CAAAGAGCTG TGGCGCTACA GCGGGCGGGG ACATGGGGTG CGCATGCGTG CGGGGGGGTA 000480
000481 CGCGTGCGTG CAAGTGCGCG TGCGCGCGCA GGACCGCTGA GGCGGGAGCC CCGAATGCGG TTCTCGCTTG CTGCGTGGCG 000560
000561 GTAAAGGACC GCAGGTGTCG TAAAAGGGCC GCAGTGGCAG CGTCCTGGCC GACGGCTAGT AGCCCATTTT GGATACCGTC 000640
000641 CTCGCTGCGG AAAGTTGGGG CAACCTGTTG CTAGTCTGGT CGTTGGTGAC AGCGAGGCTT CCGCGCTCGC TGCTGGTGAG 000720
000721 CAGCCCCGGC GTGCCCCGCG GGCTGGAAGA GGCGGCGGCG TGATGCGGCC CGTGGACGCG GACGAGGCGC GGGAGCCCCG 000800
000801 CGAGGAGCCG GGCAGCCCGC TGAGCCCCGC GCCCCGCGCC GGCCGCGAGA ACCTGGCCTC CCTGGAGCGC GAGCGCGCCC 000880
000881 GGGCGCACTG GCGGGCCCGC AGGAAGCTGC TGGAGATCCA GAGCCTGCTC GACGCCATCA AGAGTGAGGT GGAGGCAGAG 000960
000961 GAGCGGGGCG CCCGGGCCCC AGCACCCCGC CCGCGTGCGG AGGCTGAGGA GCGGGTGGCT CGGCTGTGCG CCGAAGCAGA 001040
001041 GAGGAAGGCT GCGGAGGCGG CGCGGATGGG CAGGCGGATC GTGGAGCTGC ACCAGCGGAT CGCCGGCTGC GAGTGCTGCT 001120
001121 GAGCCGGCGA GGCCGCGCGG GTCTGGAGCG GAGCGCGGCG GGGAGTGTCC CGCGTGGAAG GCGCTGGGTA GGCAGGGAGG 001200
001201 GGAGCGCAGA GCCGTGCCAC GCTCTCCGCG GAGTTGGTTT CATTCTTTTT TCATAGGTGG CCAACTGACG AACTGTGTTC 001280
001281 ACCTGATAAG GAGTCGTGGC TGCTTGGACA GGCTCAAACC AAGAGAGCCT TTCGTTTTGT CTCCCCTGTT TTTCTGCCTG 001360
001361 CGTTTTCTCC ACATTAGCCA CTCAATTTCC AGTACCATCC TGGCGGATGA CTTCAGCATT AGATGGTCAG GTGTATTTTT 001440
001441 TTATTAATAG GCGCATTCAG TTTGGAAAAG ACAGCTTTTC ATTAATGTCC CACGTAAAGG AATATGGCCT ATACAGTACG 001520
001521 TACGCTGCTG CGTGGTCATA TTTGTTCCTG TGATCTTATT GTATTTTCAA AGTTTGGAAG TATACTCGTG TGCTTTGCTG 001600
001601 TTTTTTTATG CTTCCTGGAA TTTGGGGACT CATGAGAGAC TTGAGGTTAG AGTTCTGCAA GTGAGAAGAC ACTACATGGT 001680
001681 TGCAGCTGCC ACATGAAGAA CCCAAGCTCC TGTCAAAGTT GTGAATGCGA CTTTGGATGA GATTAAGAAG GCCCAGTGGA 001760
001761 CGGTTGGTCT TGAAGAGTGG CAGTGTGTGG ATTTGAGGAC CTCTGCAGAC CATCAGATCA AAGGAGGGAG AGCTGTTTTG 001840
001841 GGTGTTTTGT TTTTTTTGTT TTTATAGCAT TTTGCTTTTT CTTGGAATGT AATTTTCCTA TGGCATGTTA ACTGGTGCAC 001920
001921 ATCGTGTAAC CTGTCTGGTG AGCAACCTAC AATTGGGATG AGTTCTAGGT ACATGTGTTT GCTGACTTTG GGGTAAACAA 002000
002001 CTTTGTTATA ATACAGTCTC TGCCACAGAT GCATGTGACC TCTTCAGGGG CCCAGAGTGG CTGAGGAAGG AAAGCTTCAA 002080
002081 GCTGGCCATG GGGGTCCCAA ACAGTCATTC CAGGCTTAGA TGATGACTAG CCTAGGTCAT CAGAGCCCAG ACTCCACAGA 002160
002161 GACTAAAATC AGAGCTCTGT CTTGTTATGA TAAATTTCAT TTGCTTGGAA AAAGAAATGC TGAAAGCCAG TGTTTAGAAT 002240
002241 CTTTGTGCAG ATGACCAAAG CAATTGACTT GGCCAAGAAA AGGTAAGGTA AATAAACATT TTTCAAAATG A
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