Difference between revisions of "ENST00000371162.4"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>GTACCATGCACCTTTGAGGGACCAAGGACCCAAGACTTGAGGTAGACACTATTCCCAGCTGGATACTCTCAATGTTGAGGATATAGATGCACAAACCAATGCAGGGAGGCCTCCAGGAGCCACTGGAGAAGAAATCTTCAGATCCTACCAGGCCCATAGCTGTTGCCTTTGTGGGCTCCTGGGTTAATTTCCACACATCAGTGGCCCACCTTATGATATCCTCCCTGCATGCCACACTCCCGGCCATGCTCTGTGGACAGCCATTATTTCCAGTAATTGCTAATGGGAGCCAGTCTCCAAAGAGTAATGAATCAGAGGTGTTCCTTGGAATGTGTTACACTAGGACTTCGCCGATCTCACAGGCTCCTTTCCAGATGAGCTGACTGTAATCTCTGGGAAGCTGGATCTGGAGGAACAATGGGATGGGATTTGCGGTGACCCTTCCTGCCCTTCTTGAGCAGCTTGTGAACCAGAAGATGTGCCTGGAGAGAAAGCCTCATTTGGGGAAGTGCAGTAGTCGAAGTTCTTTATTTTGAAAATGGAGAACAACCCTTCTCACAATCCTGTCTCCCCTTCCCCCTTTCCAACTAGAATATCAGCTCCCCTGAACATGAGTCAGTCACATTTCAGGGAAAACTGGCTGATGTTGAAGAAATCACTTGAGGGCAAACTTTGTCCTTCAAGCTGTGGGTCTCTGAAGTGTAGAGCCAGCAGATCCCCCAGTGTAGGGACTGGGCCTTCCTTGCCCATTGAATGCTTTCTATACATGAAGACTTGGAGCTCTTTACAGATGACAGTAGCCAGTGAGGAAGATAAAAGAAGAGAAAAGACCCAAAATGCGGGTTTGCCACTCTTTTTTGCCAGCACCGTGGGGACAGTCACTCTGCCTTCTTTCCACCACCTCCAACTTCACACTCACACGCACACTCTGGTCCCACAGAGCCTGTTTGGTACTTGCCTGACAGCCCACCTTGAAACCAGATGGTCATGAACCTGTCACCAAGTCATCTGAAGATCTTCCACTGCAACCTGTATGGCATCTGCCACAGGGACCATGGGACATGATTGAAGAACCACTCCAGTGCAGTTGATGAAGGGGTGGGTCTGCACTGGAGTTAGGTGCACCAGGGCCTGGGCCAAGGGTGGGCTGGGTCCATCTTGTGTGTGGTGGTCTTCTTCAGAGTAGCAGCTGATTCAGAGGGATTCCATAGAACTGCACAGGCTAGGTCTAGTCAGATATCTTGGACATTTTCTATTTCTAGATTAGAGAATATAGCATACGCTGATTTTAATATAACTGTGTATGTGACTTTTTCAGTGAGAAAAATTTTAAGTGATGTTCTAAACAATTTTTGGCATGTAGACAGAATAGTCAAATATCTGTTTAACTAGCAACATAGTTACTCGTGCATATTTAAAATACTACATGAGTATGGCCTGGCACAGTGGCTCATGCCTGTAATCCTAGCACTCTGGGAGGCCGAGGTGAGCATATTGCCTGAGTTCAGTTTGAGACCACTTTGGACAACATGGTGAAACCCTGACTCTATAAAAATACAAAAATGTAGCCAGGTGTGGTGGTGCGTGCCTGTAGTCCCGGCTACTTGGGAAGCTGAGGTGCAAGAATTGCCTGAACCTGAGAGGCAGAGGTTGCAGTGACCTGAGATTGTGTCACTGCACTCCAGCCTAGGTGACAGAGCAAGACTACATCTCAAAAAATAAAACAAAATAAAATAGGCCCTGTGCCGTGGCTCACGCCTGTAATTCCAGCATTTTGGGCAGCTGAGGCGGGCAGACCACCTGAGGTCAGGAGTTCAAGACCAGCCTGACCGACATGGTGAAACCCCATCTATACTAAATACAAAAAATTAGCCAGGTATGGTGATGCATGCCTGTAGTCCAAGCTACTTGGGAGGCTGAGGCAGGAGAGAATGGCTTCAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGTGATAGAGCAAGACTTCGTCTCAAACAATAAAATAATAAAATAAAAT</dnaseq>| | sequence = <dnaseq>GTACCATGCACCTTTGAGGGACCAAGGACCCAAGACTTGAGGTAGACACTATTCCCAGCTGGATACTCTCAATGTTGAGGATATAGATGCACAAACCAATGCAGGGAGGCCTCCAGGAGCCACTGGAGAAGAAATCTTCAGATCCTACCAGGCCCATAGCTGTTGCCTTTGTGGGCTCCTGGGTTAATTTCCACACATCAGTGGCCCACCTTATGATATCCTCCCTGCATGCCACACTCCCGGCCATGCTCTGTGGACAGCCATTATTTCCAGTAATTGCTAATGGGAGCCAGTCTCCAAAGAGTAATGAATCAGAGGTGTTCCTTGGAATGTGTTACACTAGGACTTCGCCGATCTCACAGGCTCCTTTCCAGATGAGCTGACTGTAATCTCTGGGAAGCTGGATCTGGAGGAACAATGGGATGGGATTTGCGGTGACCCTTCCTGCCCTTCTTGAGCAGCTTGTGAACCAGAAGATGTGCCTGGAGAGAAAGCCTCATTTGGGGAAGTGCAGTAGTCGAAGTTCTTTATTTTGAAAATGGAGAACAACCCTTCTCACAATCCTGTCTCCCCTTCCCCCTTTCCAACTAGAATATCAGCTCCCCTGAACATGAGTCAGTCACATTTCAGGGAAAACTGGCTGATGTTGAAGAAATCACTTGAGGGCAAACTTTGTCCTTCAAGCTGTGGGTCTCTGAAGTGTAGAGCCAGCAGATCCCCCAGTGTAGGGACTGGGCCTTCCTTGCCCATTGAATGCTTTCTATACATGAAGACTTGGAGCTCTTTACAGATGACAGTAGCCAGTGAGGAAGATAAAAGAAGAGAAAAGACCCAAAATGCGGGTTTGCCACTCTTTTTTGCCAGCACCGTGGGGACAGTCACTCTGCCTTCTTTCCACCACCTCCAACTTCACACTCACACGCACACTCTGGTCCCACAGAGCCTGTTTGGTACTTGCCTGACAGCCCACCTTGAAACCAGATGGTCATGAACCTGTCACCAAGTCATCTGAAGATCTTCCACTGCAACCTGTATGGCATCTGCCACAGGGACCATGGGACATGATTGAAGAACCACTCCAGTGCAGTTGATGAAGGGGTGGGTCTGCACTGGAGTTAGGTGCACCAGGGCCTGGGCCAAGGGTGGGCTGGGTCCATCTTGTGTGTGGTGGTCTTCTTCAGAGTAGCAGCTGATTCAGAGGGATTCCATAGAACTGCACAGGCTAGGTCTAGTCAGATATCTTGGACATTTTCTATTTCTAGATTAGAGAATATAGCATACGCTGATTTTAATATAACTGTGTATGTGACTTTTTCAGTGAGAAAAATTTTAAGTGATGTTCTAAACAATTTTTGGCATGTAGACAGAATAGTCAAATATCTGTTTAACTAGCAACATAGTTACTCGTGCATATTTAAAATACTACATGAGTATGGCCTGGCACAGTGGCTCATGCCTGTAATCCTAGCACTCTGGGAGGCCGAGGTGAGCATATTGCCTGAGTTCAGTTTGAGACCACTTTGGACAACATGGTGAAACCCTGACTCTATAAAAATACAAAAATGTAGCCAGGTGTGGTGGTGCGTGCCTGTAGTCCCGGCTACTTGGGAAGCTGAGGTGCAAGAATTGCCTGAACCTGAGAGGCAGAGGTTGCAGTGACCTGAGATTGTGTCACTGCACTCCAGCCTAGGTGACAGAGCAAGACTACATCTCAAAAAATAAAACAAAATAAAATAGGCCCTGTGCCGTGGCTCACGCCTGTAATTCCAGCATTTTGGGCAGCTGAGGCGGGCAGACCACCTGAGGTCAGGAGTTCAAGACCAGCCTGACCGACATGGTGAAACCCCATCTATACTAAATACAAAAAATTAGCCAGGTATGGTGATGCATGCCTGTAGTCCAAGCTACTTGGGAGGCTGAGGCAGGAGAGAATGGCTTCAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGTGATAGAGCAAGACTTCGTCTCAAACAATAAAATAATAAAATAAAAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:ENSG00000172965.10]] |
Revision as of 14:30, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000371162.4 |
| Source |
Gencode19 |
| Same with |
NONHSAT073627 |
| Classification |
intergenic |
| Length |
2044 nt |
| Genomic location |
chr2-:111994581..111996624 |
| Exon number |
1 |
| Exons |
111994581..111996624 |
| Genome context |
|
| Sequence |
000001 GTACCATGCA CCTTTGAGGG ACCAAGGACC CAAGACTTGA GGTAGACACT ATTCCCAGCT GGATACTCTC AATGTTGAGG 000080
000081 ATATAGATGC ACAAACCAAT GCAGGGAGGC CTCCAGGAGC CACTGGAGAA GAAATCTTCA GATCCTACCA GGCCCATAGC 000160 000161 TGTTGCCTTT GTGGGCTCCT GGGTTAATTT CCACACATCA GTGGCCCACC TTATGATATC CTCCCTGCAT GCCACACTCC 000240 000241 CGGCCATGCT CTGTGGACAG CCATTATTTC CAGTAATTGC TAATGGGAGC CAGTCTCCAA AGAGTAATGA ATCAGAGGTG 000320 000321 TTCCTTGGAA TGTGTTACAC TAGGACTTCG CCGATCTCAC AGGCTCCTTT CCAGATGAGC TGACTGTAAT CTCTGGGAAG 000400 000401 CTGGATCTGG AGGAACAATG GGATGGGATT TGCGGTGACC CTTCCTGCCC TTCTTGAGCA GCTTGTGAAC CAGAAGATGT 000480 000481 GCCTGGAGAG AAAGCCTCAT TTGGGGAAGT GCAGTAGTCG AAGTTCTTTA TTTTGAAAAT GGAGAACAAC CCTTCTCACA 000560 000561 ATCCTGTCTC CCCTTCCCCC TTTCCAACTA GAATATCAGC TCCCCTGAAC ATGAGTCAGT CACATTTCAG GGAAAACTGG 000640 000641 CTGATGTTGA AGAAATCACT TGAGGGCAAA CTTTGTCCTT CAAGCTGTGG GTCTCTGAAG TGTAGAGCCA GCAGATCCCC 000720 000721 CAGTGTAGGG ACTGGGCCTT CCTTGCCCAT TGAATGCTTT CTATACATGA AGACTTGGAG CTCTTTACAG ATGACAGTAG 000800 000801 CCAGTGAGGA AGATAAAAGA AGAGAAAAGA CCCAAAATGC GGGTTTGCCA CTCTTTTTTG CCAGCACCGT GGGGACAGTC 000880 000881 ACTCTGCCTT CTTTCCACCA CCTCCAACTT CACACTCACA CGCACACTCT GGTCCCACAG AGCCTGTTTG GTACTTGCCT 000960 000961 GACAGCCCAC CTTGAAACCA GATGGTCATG AACCTGTCAC CAAGTCATCT GAAGATCTTC CACTGCAACC TGTATGGCAT 001040 001041 CTGCCACAGG GACCATGGGA CATGATTGAA GAACCACTCC AGTGCAGTTG ATGAAGGGGT GGGTCTGCAC TGGAGTTAGG 001120 001121 TGCACCAGGG CCTGGGCCAA GGGTGGGCTG GGTCCATCTT GTGTGTGGTG GTCTTCTTCA GAGTAGCAGC TGATTCAGAG 001200 001201 GGATTCCATA GAACTGCACA GGCTAGGTCT AGTCAGATAT CTTGGACATT TTCTATTTCT AGATTAGAGA ATATAGCATA 001280 001281 CGCTGATTTT AATATAACTG TGTATGTGAC TTTTTCAGTG AGAAAAATTT TAAGTGATGT TCTAAACAAT TTTTGGCATG 001360 001361 TAGACAGAAT AGTCAAATAT CTGTTTAACT AGCAACATAG TTACTCGTGC ATATTTAAAA TACTACATGA GTATGGCCTG 001440 001441 GCACAGTGGC TCATGCCTGT AATCCTAGCA CTCTGGGAGG CCGAGGTGAG CATATTGCCT GAGTTCAGTT TGAGACCACT 001520 001521 TTGGACAACA TGGTGAAACC CTGACTCTAT AAAAATACAA AAATGTAGCC AGGTGTGGTG GTGCGTGCCT GTAGTCCCGG 001600 001601 CTACTTGGGA AGCTGAGGTG CAAGAATTGC CTGAACCTGA GAGGCAGAGG TTGCAGTGAC CTGAGATTGT GTCACTGCAC 001680 001681 TCCAGCCTAG GTGACAGAGC AAGACTACAT CTCAAAAAAT AAAACAAAAT AAAATAGGCC CTGTGCCGTG GCTCACGCCT 001760 001761 GTAATTCCAG CATTTTGGGC AGCTGAGGCG GGCAGACCAC CTGAGGTCAG GAGTTCAAGA CCAGCCTGAC CGACATGGTG 001840 001841 AAACCCCATC TATACTAAAT ACAAAAAATT AGCCAGGTAT GGTGATGCAT GCCTGTAGTC CAAGCTACTT GGGAGGCTGA 001920 001921 GGCAGGAGAG AATGGCTTCA ACCTGGGAGG CAGAGGTTGC AGTGAGCCGA GATTGCGCCA CTGCACTCCA GCCTGGGTGA 002000 002001 TAGAGCAAGA CTTCGTCTCA AACAATAAAA TAATAAAATA AAAT |
Predicted Small Protein
| Name | ENST00000371162.4_smProtein_86:382 |
| Length | 99 |
| Molecular weight | 10614.1801 |
| Aromaticity | 0.0714285714286 |
| Instability index | 62.5142857143 |
| Isoelectric point | 7.86529541016 |
| Runs | 9 |
| Runs residual | 0.0472057982071 |
| Runs probability | 0.0547115743194 |
| Amino acid sequence | MHKPMQGGLQEPLEKKSSDPTRPIAVAFVGSWVNFHTSVAHLMISSLHATLPAMLCGQPL FPVIANGSQSPKSNESEVFLGMCYTRTSPISQAPFQMS |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLEEEEEELLHHHHHHHHHHHHHHHHHHHHHHHHLLLLL LEEEELLLLLLLLLLLEEEEEEEEELLLLLLLLLLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooo oooooooooooooooooooooooooooooooooooooo |
