Difference between revisions of "ENST00000416930.2"
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sequence = <dnaseq>GATTAGAATGGGCGCTCAGGCTTGGCTCAGACACCCCACATCTTTAGGGAGACACCACCTCTTTGCTTCTCCAAGGCTGTTTGCTGCATCTGAAAAGACAATCTGGAACAAGAGGAGAGTCAGGCCAGCCACAGTGGTTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGAATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGGGAAACCCTGTCTCTACTAAAAATACAAAAATCAGCCGGGTGTGATGGTTGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTAAACCCAGGAGGTGGAGATTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGTGACAGACGAGACTCCGTCAAAAAAAAAAAAAAAAGGTTAAAATGCTACACTTTCTTATCATAGTTTACCGCAATTAAAAATCAAAACAAAACAAAACGAAAA</dnaseq>| | sequence = <dnaseq>GATTAGAATGGGCGCTCAGGCTTGGCTCAGACACCCCACATCTTTAGGGAGACACCACCTCTTTGCTTCTCCAAGGCTGTTTGCTGCATCTGAAAAGACAATCTGGAACAAGAGGAGAGTCAGGCCAGCCACAGTGGTTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGAATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGGGAAACCCTGTCTCTACTAAAAATACAAAAATCAGCCGGGTGTGATGGTTGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTAAACCCAGGAGGTGGAGATTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGTGACAGACGAGACTCCGTCAAAAAAAAAAAAAAAAGGTTAAAATGCTACACTTTCTTATCATAGTTTACCGCAATTAAAAATCAAAACAAAACAAAACGAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-ROPN1L-1]][[Category:NONHSAG039883]][[Category:ENSG00000246016.2]] | + | [[Category:Intergenic]][[Category:lnc-ROPN1L-1]][[Category:NONHSAG039883]][[Category:ENSG00000246016.2]][[Category:Transcripts]] |
Revision as of 11:37, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000416930.2 |
Source |
Gencode19 |
Same with |
lnc-ROPN1L-1:1,NONHSAT100444 |
Classification |
intergenic |
Length |
483 nt |
Genomic location |
chr5+:10479483..10482421 |
Exon number |
2 |
Exons |
10479483..10479529,10481986..10482421 |
Genome context |
|
Sequence |
000001 GATTAGAATG GGCGCTCAGG CTTGGCTCAG ACACCCCACA TCTTTAGGGA GACACCACCT CTTTGCTTCT CCAAGGCTGT 000080
000081 TTGCTGCATC TGAAAAGACA ATCTGGAACA AGAGGAGAGT CAGGCCAGCC ACAGTGGTTC ATGCCTATAA TCCCAGCACT 000160 000161 TTGGGAGGCC GAGGCAGGTG AATCACTTGA GGTCAGGAGT TCGAGACCAG CCTGGCCAAC ATGGGGAAAC CCTGTCTCTA 000240 000241 CTAAAAATAC AAAAATCAGC CGGGTGTGAT GGTTGCACCT GTAATCCCAG CTACTCGGGA GGCTGAGGCA GGAGAATCGC 000320 000321 TTAAACCCAG GAGGTGGAGA TTGCAGTGAG CCAAGATCAT GCCACTGCAC TCCAGCCTGG TGACAGACGA GACTCCGTCA 000400 000401 AAAAAAAAAA AAAAAGGTTA AAATGCTACA CTTTCTTATC ATAGTTTACC GCAATTAAAA ATCAAAACAA AACAAAACGA 000480 000481 AAA |
Predicted Small Protein
Name | ENST00000416930.2_smProtein_140:268 |
Length | 43 |
Molecular weight | 4663.2733 |
Aromaticity | 0.0714285714286 |
Instability index | 57.730952381 |
Isoelectric point | 8.34393310547 |
Runs | 7 |
Runs residual | 0.00949367088608 |
Runs probability | 0.0328437681378 |
Amino acid sequence | MPIIPALWEAEAGESLEVRSSRPAWPTWGNPVSTKNTKISRV |
Secondary structure | LLLLHHHHHHHLLLLEEELLLLLLLLLLLLLLLLLLLEEEEL |
PRMN | - |
PiMo | - |