Difference between revisions of "ENST00000419035.1"
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sequence = <dnaseq>ACAACCCTGGGATTCCCTCGCCCTCAGATTCCAGAATCCAATTTCTTGGATTTCAGTGTTTTTAAGGATTCCGTGAGTCAGGAGCTTGGCCAGGCTCAGCTGGGACACTCATCTTTGCTTCACCTCATGTCAGCTGCAGCATCTTAGGAATGCAAGACAGCCTCATTCACATCCGGCGGCGGGTGCTGGCTGTCCACTGGGTGCCTTCGCTCTTTTTCAAGTGGTTTCTCATCCTCTGGGGTTTCACTGTCTCCATGTGGCCTCCCTAGCAAGTTGCTTAGATTTCTTTACGTGGAAACTGGCTTTCTAGAGGGTAAAAATGGAAGCTGCAAGGACTCTTATGGCCCAGAAGTCCCAGAACGTCACTTCTTCCACAAGTCATAGGGCCAGCCAAGATTCAAGGGGAAGGAAACAGACTCTGTCTCTTCATATTTCAATGGGACAAATTGTTGCAGCCACCTTTGGAAACAATCTACTGCAATACACTACAGCAGTGGACATCTGGGCCCTTACCAGGTGCCAGACGCCGTACTAACAGCTTTATACGGATGAACTCATTTAATCCTCCCAAACTCCATGAGGTTTTGCAGCCCTTGCCATGAGTGGCCAGTTGCTGATAGCATTGCTGCTGCCTGTTGCTATTCTGGGATAGGAACTGAGGATGTGCTGTGATTACCCAGACCAGAAGGAAGCTCAGAAGGCACTGGTCCTCTCAGGTGGCACCCAGATCCAGTGTGAGCCATGGGGGATGAAGGGTGGTTAAGTGAAAAGCTTTGGAGTGCTGACAGGTGGTCCCCCTGATATGCCAGGAAATTACTTCCGGGCAAGAGAAACAAAGGAGAGTCCATCTTCTAATGTTACTGGCGCCATACCAACAAGGTGTCAGCTAGAAACCTCTCTCTCTCTCTTGCAAATTCTAGCCTGCAAAACCTGAGGACTGGCCTCAGGCTAGTCAGAAATTTGCCTGAAAACATCATTCCTTGGGGTGGTGGGACTTCTGGGTAAGCCAGTGTGACTTGAATTCTTGATTTCTTATACTCCCTTCTAACCAACCACCTGAATGCTGATCTCTACTAGCTGTCTGTGTGCCTTGCATTTCAATCAGCAGCCTTACAAATGATGATGAGGAGAAGGAGGAGGATGAGGACGATAGCCAACATTTACTGTTCTTTTGCTACTGTCCTAAGTACTTTACAAATACCAGATAATTTTTTCTTCATAACACTGTCATTACTCCCATTTTACAGATGAAGAAAACAAAGCTTAAATAGATCACATGATTTGGTCAAGGTCACTCATGTCACAGAGCCTGAATCCAAATCCAGTGAAGCCTCCAGAGCCTAGTTTCTACCCATGACCCTGTGTTGCCTATTGATGGTACAGTGTAGGTTTTTTCCTTCTTCCTTTTTCTTTTTTTGAAAGTCTTTATTGAATTATAATTGGCATACCATTAACTGCAAATATTTGAAAAATACAATTTTATGAGCTCTGACATACATACACCCATAAAACCATTGTTACAATCAAGATAATGAATATGTCCGTCATTCCCCAAAAGCTTCCCTGTGCCCCTTGGTAATCCACCCCTCACTCCCCACCCCATTCTGTTCCTAGGCAACCAATCATCTGTTTTCTGTCAGATTAATTTGCATTTTCTAGAGTTTTATATATGGAAGCAGACAGCATGTACTCTTTTTTTGTCTGGCTTCTTTCACTCAGCATAATTATTTTTAGGTTCATCTATATTGGTGCACGTATCAACAATTCATTCTTTTCTATTCCTGAGTACTATTCCATTATATAGGTGTACTAAATTTGTTTATTCAACTCTTGATGGACATTGAGTTGTTTACAGTTTTTGGCTATTACAAATAAAGCTGCTATGAACCTTC</dnaseq>| | sequence = <dnaseq>ACAACCCTGGGATTCCCTCGCCCTCAGATTCCAGAATCCAATTTCTTGGATTTCAGTGTTTTTAAGGATTCCGTGAGTCAGGAGCTTGGCCAGGCTCAGCTGGGACACTCATCTTTGCTTCACCTCATGTCAGCTGCAGCATCTTAGGAATGCAAGACAGCCTCATTCACATCCGGCGGCGGGTGCTGGCTGTCCACTGGGTGCCTTCGCTCTTTTTCAAGTGGTTTCTCATCCTCTGGGGTTTCACTGTCTCCATGTGGCCTCCCTAGCAAGTTGCTTAGATTTCTTTACGTGGAAACTGGCTTTCTAGAGGGTAAAAATGGAAGCTGCAAGGACTCTTATGGCCCAGAAGTCCCAGAACGTCACTTCTTCCACAAGTCATAGGGCCAGCCAAGATTCAAGGGGAAGGAAACAGACTCTGTCTCTTCATATTTCAATGGGACAAATTGTTGCAGCCACCTTTGGAAACAATCTACTGCAATACACTACAGCAGTGGACATCTGGGCCCTTACCAGGTGCCAGACGCCGTACTAACAGCTTTATACGGATGAACTCATTTAATCCTCCCAAACTCCATGAGGTTTTGCAGCCCTTGCCATGAGTGGCCAGTTGCTGATAGCATTGCTGCTGCCTGTTGCTATTCTGGGATAGGAACTGAGGATGTGCTGTGATTACCCAGACCAGAAGGAAGCTCAGAAGGCACTGGTCCTCTCAGGTGGCACCCAGATCCAGTGTGAGCCATGGGGGATGAAGGGTGGTTAAGTGAAAAGCTTTGGAGTGCTGACAGGTGGTCCCCCTGATATGCCAGGAAATTACTTCCGGGCAAGAGAAACAAAGGAGAGTCCATCTTCTAATGTTACTGGCGCCATACCAACAAGGTGTCAGCTAGAAACCTCTCTCTCTCTCTTGCAAATTCTAGCCTGCAAAACCTGAGGACTGGCCTCAGGCTAGTCAGAAATTTGCCTGAAAACATCATTCCTTGGGGTGGTGGGACTTCTGGGTAAGCCAGTGTGACTTGAATTCTTGATTTCTTATACTCCCTTCTAACCAACCACCTGAATGCTGATCTCTACTAGCTGTCTGTGTGCCTTGCATTTCAATCAGCAGCCTTACAAATGATGATGAGGAGAAGGAGGAGGATGAGGACGATAGCCAACATTTACTGTTCTTTTGCTACTGTCCTAAGTACTTTACAAATACCAGATAATTTTTTCTTCATAACACTGTCATTACTCCCATTTTACAGATGAAGAAAACAAAGCTTAAATAGATCACATGATTTGGTCAAGGTCACTCATGTCACAGAGCCTGAATCCAAATCCAGTGAAGCCTCCAGAGCCTAGTTTCTACCCATGACCCTGTGTTGCCTATTGATGGTACAGTGTAGGTTTTTTCCTTCTTCCTTTTTCTTTTTTTGAAAGTCTTTATTGAATTATAATTGGCATACCATTAACTGCAAATATTTGAAAAATACAATTTTATGAGCTCTGACATACATACACCCATAAAACCATTGTTACAATCAAGATAATGAATATGTCCGTCATTCCCCAAAAGCTTCCCTGTGCCCCTTGGTAATCCACCCCTCACTCCCCACCCCATTCTGTTCCTAGGCAACCAATCATCTGTTTTCTGTCAGATTAATTTGCATTTTCTAGAGTTTTATATATGGAAGCAGACAGCATGTACTCTTTTTTTGTCTGGCTTCTTTCACTCAGCATAATTATTTTTAGGTTCATCTATATTGGTGCACGTATCAACAATTCATTCTTTTCTATTCCTGAGTACTATTCCATTATATAGGTGTACTAAATTTGTTTATTCAACTCTTGATGGACATTGAGTTGTTTACAGTTTTTGGCTATTACAAATAAAGCTGCTATGAACCTTC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-CALM2-2]][[Category:NONHSAG027686]] | + | [[Category:Intergenic]][[Category:lnc-CALM2-2]][[Category:NONHSAG027686]][[Category:ENSG00000234690.2]] |
Revision as of 18:41, 15 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000419035.1 |
Source |
Gencode19 |
Same with |
lnc-CALM2-2:5,NONHSAT070551 |
Classification |
intergenic |
Length |
1892 nt |
Genomic location |
chr2-:47441088..47572105 |
Exon number |
3 |
Exons |
47441088..47442398,47447948..47448462,47572040..47572105 |
Genome context |
|
Sequence |
000001 ACAACCCTGG GATTCCCTCG CCCTCAGATT CCAGAATCCA ATTTCTTGGA TTTCAGTGTT TTTAAGGATT CCGTGAGTCA 000080
000081 GGAGCTTGGC CAGGCTCAGC TGGGACACTC ATCTTTGCTT CACCTCATGT CAGCTGCAGC ATCTTAGGAA TGCAAGACAG 000160 000161 CCTCATTCAC ATCCGGCGGC GGGTGCTGGC TGTCCACTGG GTGCCTTCGC TCTTTTTCAA GTGGTTTCTC ATCCTCTGGG 000240 000241 GTTTCACTGT CTCCATGTGG CCTCCCTAGC AAGTTGCTTA GATTTCTTTA CGTGGAAACT GGCTTTCTAG AGGGTAAAAA 000320 000321 TGGAAGCTGC AAGGACTCTT ATGGCCCAGA AGTCCCAGAA CGTCACTTCT TCCACAAGTC ATAGGGCCAG CCAAGATTCA 000400 000401 AGGGGAAGGA AACAGACTCT GTCTCTTCAT ATTTCAATGG GACAAATTGT TGCAGCCACC TTTGGAAACA ATCTACTGCA 000480 000481 ATACACTACA GCAGTGGACA TCTGGGCCCT TACCAGGTGC CAGACGCCGT ACTAACAGCT TTATACGGAT GAACTCATTT 000560 000561 AATCCTCCCA AACTCCATGA GGTTTTGCAG CCCTTGCCAT GAGTGGCCAG TTGCTGATAG CATTGCTGCT GCCTGTTGCT 000640 000641 ATTCTGGGAT AGGAACTGAG GATGTGCTGT GATTACCCAG ACCAGAAGGA AGCTCAGAAG GCACTGGTCC TCTCAGGTGG 000720 000721 CACCCAGATC CAGTGTGAGC CATGGGGGAT GAAGGGTGGT TAAGTGAAAA GCTTTGGAGT GCTGACAGGT GGTCCCCCTG 000800 000801 ATATGCCAGG AAATTACTTC CGGGCAAGAG AAACAAAGGA GAGTCCATCT TCTAATGTTA CTGGCGCCAT ACCAACAAGG 000880 000881 TGTCAGCTAG AAACCTCTCT CTCTCTCTTG CAAATTCTAG CCTGCAAAAC CTGAGGACTG GCCTCAGGCT AGTCAGAAAT 000960 000961 TTGCCTGAAA ACATCATTCC TTGGGGTGGT GGGACTTCTG GGTAAGCCAG TGTGACTTGA ATTCTTGATT TCTTATACTC 001040 001041 CCTTCTAACC AACCACCTGA ATGCTGATCT CTACTAGCTG TCTGTGTGCC TTGCATTTCA ATCAGCAGCC TTACAAATGA 001120 001121 TGATGAGGAG AAGGAGGAGG ATGAGGACGA TAGCCAACAT TTACTGTTCT TTTGCTACTG TCCTAAGTAC TTTACAAATA 001200 001201 CCAGATAATT TTTTCTTCAT AACACTGTCA TTACTCCCAT TTTACAGATG AAGAAAACAA AGCTTAAATA GATCACATGA 001280 001281 TTTGGTCAAG GTCACTCATG TCACAGAGCC TGAATCCAAA TCCAGTGAAG CCTCCAGAGC CTAGTTTCTA CCCATGACCC 001360 001361 TGTGTTGCCT ATTGATGGTA CAGTGTAGGT TTTTTCCTTC TTCCTTTTTC TTTTTTTGAA AGTCTTTATT GAATTATAAT 001440 001441 TGGCATACCA TTAACTGCAA ATATTTGAAA AATACAATTT TATGAGCTCT GACATACATA CACCCATAAA ACCATTGTTA 001520 001521 CAATCAAGAT AATGAATATG TCCGTCATTC CCCAAAAGCT TCCCTGTGCC CCTTGGTAAT CCACCCCTCA CTCCCCACCC 001600 001601 CATTCTGTTC CTAGGCAACC AATCATCTGT TTTCTGTCAG ATTAATTTGC ATTTTCTAGA GTTTTATATA TGGAAGCAGA 001680 001681 CAGCATGTAC TCTTTTTTTG TCTGGCTTCT TTCACTCAGC ATAATTATTT TTAGGTTCAT CTATATTGGT GCACGTATCA 001760 001761 ACAATTCATT CTTTTCTATT CCTGAGTACT ATTCCATTAT ATAGGTGTAC TAAATTTGTT TATTCAACTC TTGATGGACA 001840 001841 TTGAGTTGTT TACAGTTTTT GGCTATTACA AATAAAGCTG CTATGAACCT TC |
Predicted Small Protein
Name | ENST00000419035.1_smProtein_149:268 |
Length | 40 |
Molecular weight | 4811.7621 |
Aromaticity | 0.205128205128 |
Instability index | 77.8897435897 |
Isoelectric point | 11.7113647461 |
Runs | 7 |
Runs residual | 0.0107466063348 |
Runs probability | 0.0202765791001 |
Amino acid sequence | MQDSLIHIRRRVLAVHWVPSLFFKWFLILWGFTVSMWPP |
Secondary structure | LLLHHHHHHHHHHHHHLLHHHHHHHHHHHHLLLEELLLL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | iiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooo |