ENST00000420598.1
Revision as of 18:42, 15 October 2014 by 211.100.51.162 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000420598.1 |
Source |
Gencode19 |
Same with |
lnc-PPIAL4G-6:6,NONHSAT005679 |
Classification |
intergenic |
Length |
557 nt |
Genomic location |
chr1-:143188509..143195834 |
Exon number |
5 |
Exons |
143188509..143188589,143189434..143189487,143190655..143190700,143194122..143194342,143195680..143195834 |
Genome context |
|
Sequence |
000001 CTAAATAAGA AGGAACTCAC ACTTAAAGAT GTGGAATGTA AATTCTACAA AATGAAAACT GCTTATGAAG AGGTTACAAC 000080
000081 TGAGTTAGAA GAATATAAGG AAGCCTTTGC AGCAGCATTG AAAGCTAATA GTTCCATGTC AAAAAAATTA ACTAAATCGA 000160 000161 ATAAGAAAAT AGCAATGATC AGTATCAGCT CTTTATGGAG AAAGAGCAGG TGAAATATTT TCTCAGCACT CTTCCTACAA 000240 000241 GGCGAGGTCG AGAGTCACCT TGTGTTGAAA ATCTTACTAG TATAGGACTC AACAGAAAAT ATATTCCCCA AATGCCCGTA 000320 000321 AGAATTCCTA CTTCAAACCT CAGACTTCAA ATAACTGCCA GAACTACTTG ACTGAGATGG GGCCGGACTG TGTAGAATAA 000400 000401 ATAATTAGAG AAACAAAGAG AACTGTTGCT GTATTGGACA CTTGCTCCCA TCTACTTTCT TCTCTGGAAT CCACGGCCAC 000480 000481 TGAGGAAGCA CAGGTGAGCC CTCCCCAGTG TGTACTCACT GGTCCCCAAC AGAAGAACCA CTGCCACATC CACTGAG |
Predicted Small Protein
Name | ENST00000420598.1_smProtein_194:370 |
Length | 59 |
Molecular weight | 6733.8006 |
Aromaticity | 0.051724137931 |
Instability index | 53.5465517241 |
Isoelectric point | 10.506652832 |
Runs | 11 |
Runs residual | 0.0330617658204 |
Runs probability | 0.0364375070258 |
Amino acid sequence | MEKEQVKYFLSTLPTRRGRESPCVENLTSIGLNRKYIPQMPVRIPTSNLRLQITARTT |
Secondary structure | LLHHHHHHLLLLLLLLLLLLLLLLLLLEELLLLEEEELLLLEEELLLLLEEEEEEELL |
PRMN | - |
PiMo | - |