Difference between revisions of "ENST00000420707.1"

From LncRNAWiki
Jump to: navigation, search
 
(One intermediate revision by one other user not shown)
Line 42: Line 42:
 
sequence = <dnaseq>TGGGAGCTTAAGGGCGCCGGCACGCGTTCCCCTGGCGCAGAGCTCGCTAGCCGGGGCGCGGGCTGCCTCCTTGTTCTGGTGTGATCCGAATGTAACGGAGCGGACTTTGGGATCCAGAACCCCGGACTGAGGTTGTGCTTGGCTTGAGGGGCGGGCTGGATTTTTCCTCTTAGGATTTATTTCCCTGGAGACCTCATGAAGAATGATGTGGGTTCTATAGGGTACAGTGTGATCTGGGTCCTGCCTAATCTCCTTTCTAAACTTCAGAAAATCATGTACCTTGGAGTTGTGGAGGCATGTTTATAAGCAGATCTGAGTTTTGCCACACTGGAATTTATTTATTCATTGAACAAATATTTAATACCTACTACAATTCTTAGCCGATATATCAGCACAACTTCTCTGCTCCAACTAGTCTACATTGCAAAGCATCTCCTAGTGTCTTTGGAAGAAGGATCTATGGTGTTATATGTGAACAAAGATGTAGACTAGTAAGGTATCAAGATTTGATGGGGATATCCAGACAACTTGGAGCCAAGTCCCCACAGCTGGATCAGACAACTTTTGGTGACATCTCACAGTGTGGATTATCAAGCCAGTGTATCAGTCTGGAGCCTAGGTTTTTTGCCTTTAGCTTTGCTCAGGATGACTTCTGCTCTTCTATGGCAATACTTGAGAAGCTACAGCTTTGATTAGACGAGAGGCTATTTCAATAACTTTCTCCTGATAAGAAGACCACCGACCGTGGACGGATTCTGGCCAGTTTACAAAGGCTGCATACCATAGGGCAGGGCACCCCACTATGGCAAACACTAATAATGATATTGCTCCTGATTTTGTTTCTGAAGGGAATGCCTCTAAGATTTCTTCATTAATTATAAGAGACTGGGTCTCACTCTGTTGCCC</dnaseq>|
 
sequence = <dnaseq>TGGGAGCTTAAGGGCGCCGGCACGCGTTCCCCTGGCGCAGAGCTCGCTAGCCGGGGCGCGGGCTGCCTCCTTGTTCTGGTGTGATCCGAATGTAACGGAGCGGACTTTGGGATCCAGAACCCCGGACTGAGGTTGTGCTTGGCTTGAGGGGCGGGCTGGATTTTTCCTCTTAGGATTTATTTCCCTGGAGACCTCATGAAGAATGATGTGGGTTCTATAGGGTACAGTGTGATCTGGGTCCTGCCTAATCTCCTTTCTAAACTTCAGAAAATCATGTACCTTGGAGTTGTGGAGGCATGTTTATAAGCAGATCTGAGTTTTGCCACACTGGAATTTATTTATTCATTGAACAAATATTTAATACCTACTACAATTCTTAGCCGATATATCAGCACAACTTCTCTGCTCCAACTAGTCTACATTGCAAAGCATCTCCTAGTGTCTTTGGAAGAAGGATCTATGGTGTTATATGTGAACAAAGATGTAGACTAGTAAGGTATCAAGATTTGATGGGGATATCCAGACAACTTGGAGCCAAGTCCCCACAGCTGGATCAGACAACTTTTGGTGACATCTCACAGTGTGGATTATCAAGCCAGTGTATCAGTCTGGAGCCTAGGTTTTTTGCCTTTAGCTTTGCTCAGGATGACTTCTGCTCTTCTATGGCAATACTTGAGAAGCTACAGCTTTGATTAGACGAGAGGCTATTTCAATAACTTTCTCCTGATAAGAAGACCACCGACCGTGGACGGATTCTGGCCAGTTTACAAAGGCTGCATACCATAGGGCAGGGCACCCCACTATGGCAAACACTAATAATGATATTGCTCCTGATTTTGTTTCTGAAGGGAATGCCTCTAAGATTTCTTCATTAATTATAAGAGACTGGGTCTCACTCTGTTGCCC</dnaseq>|
 
}}
 
}}
[[Category:Overlapping(AS)]][[Category:lnc-LCE5A-2]][[Category:NONHSAG002948]]
+
[[Category:Overlapping(AS)]][[Category:lnc-LCE5A-2]][[Category:NONHSAG002948]][[Category:ENSG00000237975.2]][[Category:Transcripts]]

Latest revision as of 15:04, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000420707.1

Source

Gencode19

Same with

lnc-LCE5A-2:1,NONHSAT006468

Classification

overlapping(AS)

Length

906 nt

Genomic location

chr1+:152161827..152313586

Exon number

9

Exons

152161827..152161984,152221371..152221488,152224129..152224234,152274230..152274309,152287382..152287433,152305059..152305224,152307815..152307915,152310465..152310565,152313563..152313586

Genome context

Sequence
000001 TGGGAGCTTA AGGGCGCCGG CACGCGTTCC CCTGGCGCAG AGCTCGCTAG CCGGGGCGCG GGCTGCCTCC TTGTTCTGGT 000080
000081 GTGATCCGAA TGTAACGGAG CGGACTTTGG GATCCAGAAC CCCGGACTGA GGTTGTGCTT GGCTTGAGGG GCGGGCTGGA 000160
000161 TTTTTCCTCT TAGGATTTAT TTCCCTGGAG ACCTCATGAA GAATGATGTG GGTTCTATAG GGTACAGTGT GATCTGGGTC 000240
000241 CTGCCTAATC TCCTTTCTAA ACTTCAGAAA ATCATGTACC TTGGAGTTGT GGAGGCATGT TTATAAGCAG ATCTGAGTTT 000320
000321 TGCCACACTG GAATTTATTT ATTCATTGAA CAAATATTTA ATACCTACTA CAATTCTTAG CCGATATATC AGCACAACTT 000400
000401 CTCTGCTCCA ACTAGTCTAC ATTGCAAAGC ATCTCCTAGT GTCTTTGGAA GAAGGATCTA TGGTGTTATA TGTGAACAAA 000480
000481 GATGTAGACT AGTAAGGTAT CAAGATTTGA TGGGGATATC CAGACAACTT GGAGCCAAGT CCCCACAGCT GGATCAGACA 000560
000561 ACTTTTGGTG ACATCTCACA GTGTGGATTA TCAAGCCAGT GTATCAGTCT GGAGCCTAGG TTTTTTGCCT TTAGCTTTGC 000640
000641 TCAGGATGAC TTCTGCTCTT CTATGGCAAT ACTTGAGAAG CTACAGCTTT GATTAGACGA GAGGCTATTT CAATAACTTT 000720
000721 CTCCTGATAA GAAGACCACC GACCGTGGAC GGATTCTGGC CAGTTTACAA AGGCTGCATA CCATAGGGCA GGGCACCCCA 000800
000801 CTATGGCAAA CACTAATAAT GATATTGCTC CTGATTTTGT TTCTGAAGGG AATGCCTCTA AGATTTCTTC ATTAATTATA 000880
000881 AGAGACTGGG TCTCACTCTG TTGCCC
[back to top]

Predicted Small Protein

Name ENST00000420707.1_smProtein_509:691
Length 61
Molecular weight 6594.4611
Aromaticity 0.1
Instability index 49.5316666667
Isoelectric point 4.52825927734
Runs 10
Runs residual 0.0169326241135
Runs probability 0.0328652181594
Amino acid sequence MGISRQLGAKSPQLDQTTFGDISQCGLSSQCISLEPRFFAFSFAQDDFCSSMAILEKLQL
Secondary structure LLLLLLLLLLLLLLLLLLLLLHHHLLLLLLEEELLLLEEEEHHHHHLHHHHHHHHHHHLL
PRMN -
PiMo -