Difference between revisions of "ENST00000426358.1"
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sequence = <dnaseq>ACAATGCGCAGCTGAATTGGGATGAGGGGCCAGGACAAAGCAGAAATCTGCTGCAGAGAGCAGGAAAGATATTCTGTAGCAGGATCTGGGCAAGCGGCACTCATCCATATCCTTTGCATTGCAAAGAGAGGAGCTACCTCCTTCCTTTTTATTTTCCAGTTTATTGGTGGCTCCTAGAACCTCTGAGAACTAACTGATTTTGACCTCTTAACAGTTGCCTTTCAACTACCATTCATTTACTGCAAGCCTACTGTGTAACAGGCCCTTGCTAACCACTTCAGATATATTGTCTCTTGTCCAGCTTCAAGTGACTCTCTTAGGGAGGGATTAGCCTCACCTCACTAGTATGGAAATGGAGACTTGGAGTAATCAAGTGACTTGCTCTGAATTACACAGCTGGGAAGTGGTGAAGCTGGAATTCAACTCAAGTTATGTCTAGATCTAAAACTCATGCTCTTTTCTATGCTCAAAGCTGCATATCAAAACTGAACTTTAGCATGGAGTCTATGATGACTGGCTCATGTCTCTCCACCCAGCACCTAGCCCAAGGCCAAGCACAGAGAAGGCTCACAGTGGACACTTTTGGAATGAGTAGATTTTTTATGGAATGGTCGAGCACACTGAACTACCTGGAGTAAAGGGGCATCATGTCTGAAACTGATGCTTAAGTGGCTCAGAAAAAAAATTCTGGGAGCTAGAGGGAGAGAGAGACAGAGGAGTGTGGTAAAAAGTTAACATTTTGGGGATCTGCGTAAAGGTATATGAGGATTCTTTGTACAGATTTTGCAATTTTTCTCCAAATGTGAAATTATGTCAAAATATAAAATTAAAAGACAAAATTAAAAGAATGAATGAGAGTTTGCTAGGTAGAGAAGCAGGGGGATCTTCTGGCAAAGGAACAGGATAAGCAAAAGCATCACAAGTGTGCGAGTCTTCTGTGTTGACAA</dnaseq>| | sequence = <dnaseq>ACAATGCGCAGCTGAATTGGGATGAGGGGCCAGGACAAAGCAGAAATCTGCTGCAGAGAGCAGGAAAGATATTCTGTAGCAGGATCTGGGCAAGCGGCACTCATCCATATCCTTTGCATTGCAAAGAGAGGAGCTACCTCCTTCCTTTTTATTTTCCAGTTTATTGGTGGCTCCTAGAACCTCTGAGAACTAACTGATTTTGACCTCTTAACAGTTGCCTTTCAACTACCATTCATTTACTGCAAGCCTACTGTGTAACAGGCCCTTGCTAACCACTTCAGATATATTGTCTCTTGTCCAGCTTCAAGTGACTCTCTTAGGGAGGGATTAGCCTCACCTCACTAGTATGGAAATGGAGACTTGGAGTAATCAAGTGACTTGCTCTGAATTACACAGCTGGGAAGTGGTGAAGCTGGAATTCAACTCAAGTTATGTCTAGATCTAAAACTCATGCTCTTTTCTATGCTCAAAGCTGCATATCAAAACTGAACTTTAGCATGGAGTCTATGATGACTGGCTCATGTCTCTCCACCCAGCACCTAGCCCAAGGCCAAGCACAGAGAAGGCTCACAGTGGACACTTTTGGAATGAGTAGATTTTTTATGGAATGGTCGAGCACACTGAACTACCTGGAGTAAAGGGGCATCATGTCTGAAACTGATGCTTAAGTGGCTCAGAAAAAAAATTCTGGGAGCTAGAGGGAGAGAGAGACAGAGGAGTGTGGTAAAAAGTTAACATTTTGGGGATCTGCGTAAAGGTATATGAGGATTCTTTGTACAGATTTTGCAATTTTTCTCCAAATGTGAAATTATGTCAAAATATAAAATTAAAAGACAAAATTAAAAGAATGAATGAGAGTTTGCTAGGTAGAGAAGCAGGGGGATCTTCTGGCAAAGGAACAGGATAAGCAAAAGCATCACAAGTGTGCGAGTCTTCTGTGTTGACAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:ENSG00000232920.1]][[Category:lnc-PAX5-1]] | + | [[Category:Intergenic]][[Category:ENSG00000232920.1]][[Category:lnc-PAX5-1]][[Category:Transcripts]] |
Latest revision as of 15:14, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000426358.1 |
Source |
Gencode19 |
Same with |
lnc-PAX5-1:1 |
Classification |
intergenic |
Length |
947 nt |
Genomic location |
chr9-:37073528..37075789 |
Exon number |
2 |
Exons |
37073528..37073864,37075180..37075789 |
Genome context |
|
Sequence |
000001 ACAATGCGCA GCTGAATTGG GATGAGGGGC CAGGACAAAG CAGAAATCTG CTGCAGAGAG CAGGAAAGAT ATTCTGTAGC 000080
000081 AGGATCTGGG CAAGCGGCAC TCATCCATAT CCTTTGCATT GCAAAGAGAG GAGCTACCTC CTTCCTTTTT ATTTTCCAGT 000160 000161 TTATTGGTGG CTCCTAGAAC CTCTGAGAAC TAACTGATTT TGACCTCTTA ACAGTTGCCT TTCAACTACC ATTCATTTAC 000240 000241 TGCAAGCCTA CTGTGTAACA GGCCCTTGCT AACCACTTCA GATATATTGT CTCTTGTCCA GCTTCAAGTG ACTCTCTTAG 000320 000321 GGAGGGATTA GCCTCACCTC ACTAGTATGG AAATGGAGAC TTGGAGTAAT CAAGTGACTT GCTCTGAATT ACACAGCTGG 000400 000401 GAAGTGGTGA AGCTGGAATT CAACTCAAGT TATGTCTAGA TCTAAAACTC ATGCTCTTTT CTATGCTCAA AGCTGCATAT 000480 000481 CAAAACTGAA CTTTAGCATG GAGTCTATGA TGACTGGCTC ATGTCTCTCC ACCCAGCACC TAGCCCAAGG CCAAGCACAG 000560 000561 AGAAGGCTCA CAGTGGACAC TTTTGGAATG AGTAGATTTT TTATGGAATG GTCGAGCACA CTGAACTACC TGGAGTAAAG 000640 000641 GGGCATCATG TCTGAAACTG ATGCTTAAGT GGCTCAGAAA AAAAATTCTG GGAGCTAGAG GGAGAGAGAG ACAGAGGAGT 000720 000721 GTGGTAAAAA GTTAACATTT TGGGGATCTG CGTAAAGGTA TATGAGGATT CTTTGTACAG ATTTTGCAAT TTTTCTCCAA 000800 000801 ATGTGAAATT ATGTCAAAAT ATAAAATTAA AAGACAAAAT TAAAAGAATG AATGAGAGTT TGCTAGGTAG AGAAGCAGGG 000880 000881 GGATCTTCTG GCAAAGGAAC AGGATAAGCA AAAGCATCAC AAGTGTGCGA GTCTTCTGTG TTGACAA |
Predicted Small Protein
Name | ENST00000426358.1_smProtein_431:637 |
Length | 69 |
Molecular weight | 7810.88 |
Aromaticity | 0.117647058824 |
Instability index | 64.6707352941 |
Isoelectric point | 8.80316162109 |
Runs | 12 |
Runs residual | 0.0359697933227 |
Runs probability | 0.0238252958841 |
Amino acid sequence | MSRSKTHALFYAQSCISKLNFSMESMMTGSCLSTQHLAQGQAQRRLTVDTFGMSRFFMEW SSTLNYLE |
Secondary structure | LLLLHHHHHHHHHHHHHHHHHLHHHHHHLLHHHHHHHHHHHHHHHEEELLLLHHHHEEEH HHHHLLLL |
PRMN | - |
PiMo | - |