Difference between revisions of "ENST00000435075.1"
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sequence = <dnaseq>TCCACGTTGGCTGGTTTGAAACTGTGGTGTATGTTTAAGCTCAGGCTGGAAAAGGATCACTGAAAGTCACTTGGATGGTGTCTCGTGTGTCTGTGATGAGCTTGCTGTTGCTTTCTTTCTCCTTGACAGATGAGAAAACAGTGGCTTCAAAGGTTAAACAACTTGTCTTCGATTGCACAGCTAACAAGAGCTCACTGTCCAAAGGGAGTCTCTCTCCCCGGTCCACATGCTGAGGCTTGCTCCAGAGTGAATGTGTGCACTGGAAAGAACCCACACAGGCCCCCTGAGAGCTGTCAGCCTTGCCAGGCTTCTGTGAGATCCCTGGGTCCGAGTAGCCAAGCTGGGAGGAGCACCATTTGCCCACTGACTCTTGGGCAACGCTGCAGCCTGCATCCCAGCCGGCAGAAGGCAGGTGGTATCACAGCTGAGTTTACAGCCACGGAAGGAACCACTGTAGGCTTTTAGTAGATAATATGTTTTCTCTGCTTCAAATCCTTATTTTGGTTGCTTAAAATTTCTGCAGAAAACAAACAGCTTCTGCCAAAATTGGCTCACAAAATTAGCTTACTAGTATAATCAGTTGTATAGCAAGTATTTACTGAGTAGCTCTTGGAAGGCAGTCAACACAAGAGGGATGGATCATTCTTCCAGTTCATCACACGTGGGTTGGACATGCTAACAGTCCCCGATAGCTATCAGGCGAGTAAATGGATGATCACACAAAGGCAGAGGCATCGCAGAAGGATGCTAACTAGATGTCATGCGTCAAGGATACTACAGAAGGATCTCTTTGCTGACAAGGAGGGTACCTCTAAGGTTCCTTCAGATGGGATGGTTCTCTGTTCACCGTGATCACTACTATGCAAAGGCCTGTGGGCCATTTAGGAGAAAAGCATTCAGTCCAATTCCACAGACACAGTGAGGATGTAATATGCCCTAGGCATATATGAGTGGATCCAAGGAGGAAATACTCAGTCACTACTGTCAAGAACTCATGACCTGCTGCAGGGTTTGCCAAACTATGGCTTGTGGGCCAATCTGGCTCACCACCTATTTTAGTAAATAATGTTTTACTGGAATCCAGACACGCTTGTTTGATTACATATTGTCTATGGCTGCTGAGCACCCACTATAAGGGCAAAGTTAAGTAGATAGAGACTTTATCACCCACAAAACCTAAAATATTTGACTGGATGGCCCTCTACAGAAAAAGCCTGCGAACCTGTGGTCTTGTGGGAGGACACTGCTGGGCACAGTTAACTCTAATTCTTGGCTGTAGCATCTTGAATAGGGTGGCAGTCCCTGGCTGCTGAGGGGGACAGCTGGACGGCTGCCTCCCAGGGGCATTTCCATGACTTGC</dnaseq>| | sequence = <dnaseq>TCCACGTTGGCTGGTTTGAAACTGTGGTGTATGTTTAAGCTCAGGCTGGAAAAGGATCACTGAAAGTCACTTGGATGGTGTCTCGTGTGTCTGTGATGAGCTTGCTGTTGCTTTCTTTCTCCTTGACAGATGAGAAAACAGTGGCTTCAAAGGTTAAACAACTTGTCTTCGATTGCACAGCTAACAAGAGCTCACTGTCCAAAGGGAGTCTCTCTCCCCGGTCCACATGCTGAGGCTTGCTCCAGAGTGAATGTGTGCACTGGAAAGAACCCACACAGGCCCCCTGAGAGCTGTCAGCCTTGCCAGGCTTCTGTGAGATCCCTGGGTCCGAGTAGCCAAGCTGGGAGGAGCACCATTTGCCCACTGACTCTTGGGCAACGCTGCAGCCTGCATCCCAGCCGGCAGAAGGCAGGTGGTATCACAGCTGAGTTTACAGCCACGGAAGGAACCACTGTAGGCTTTTAGTAGATAATATGTTTTCTCTGCTTCAAATCCTTATTTTGGTTGCTTAAAATTTCTGCAGAAAACAAACAGCTTCTGCCAAAATTGGCTCACAAAATTAGCTTACTAGTATAATCAGTTGTATAGCAAGTATTTACTGAGTAGCTCTTGGAAGGCAGTCAACACAAGAGGGATGGATCATTCTTCCAGTTCATCACACGTGGGTTGGACATGCTAACAGTCCCCGATAGCTATCAGGCGAGTAAATGGATGATCACACAAAGGCAGAGGCATCGCAGAAGGATGCTAACTAGATGTCATGCGTCAAGGATACTACAGAAGGATCTCTTTGCTGACAAGGAGGGTACCTCTAAGGTTCCTTCAGATGGGATGGTTCTCTGTTCACCGTGATCACTACTATGCAAAGGCCTGTGGGCCATTTAGGAGAAAAGCATTCAGTCCAATTCCACAGACACAGTGAGGATGTAATATGCCCTAGGCATATATGAGTGGATCCAAGGAGGAAATACTCAGTCACTACTGTCAAGAACTCATGACCTGCTGCAGGGTTTGCCAAACTATGGCTTGTGGGCCAATCTGGCTCACCACCTATTTTAGTAAATAATGTTTTACTGGAATCCAGACACGCTTGTTTGATTACATATTGTCTATGGCTGCTGAGCACCCACTATAAGGGCAAAGTTAAGTAGATAGAGACTTTATCACCCACAAAACCTAAAATATTTGACTGGATGGCCCTCTACAGAAAAAGCCTGCGAACCTGTGGTCTTGTGGGAGGACACTGCTGGGCACAGTTAACTCTAATTCTTGGCTGTAGCATCTTGAATAGGGTGGCAGTCCCTGGCTGCTGAGGGGGACAGCTGGACGGCTGCCTCCCAGGGGCATTTCCATGACTTGC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:ENSG00000230876.2]][[Category:lnc-TTC27-1]] | + | [[Category:Intergenic]][[Category:ENSG00000230876.2]][[Category:lnc-TTC27-1]][[Category:Transcripts]] |
Revision as of 11:51, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000435075.1 |
Source |
Gencode19 |
Same with |
lnc-TTC27-1:11 |
Classification |
intergenic |
Length |
1360 nt |
Genomic location |
chr2+:33107868..33151589 |
Exon number |
4 |
Exons |
33107868..33107893,33123607..33123709,33127130..33127190,33150420..33151589 |
Genome context |
|
Sequence |
000001 TCCACGTTGG CTGGTTTGAA ACTGTGGTGT ATGTTTAAGC TCAGGCTGGA AAAGGATCAC TGAAAGTCAC TTGGATGGTG 000080
000081 TCTCGTGTGT CTGTGATGAG CTTGCTGTTG CTTTCTTTCT CCTTGACAGA TGAGAAAACA GTGGCTTCAA AGGTTAAACA 000160 000161 ACTTGTCTTC GATTGCACAG CTAACAAGAG CTCACTGTCC AAAGGGAGTC TCTCTCCCCG GTCCACATGC TGAGGCTTGC 000240 000241 TCCAGAGTGA ATGTGTGCAC TGGAAAGAAC CCACACAGGC CCCCTGAGAG CTGTCAGCCT TGCCAGGCTT CTGTGAGATC 000320 000321 CCTGGGTCCG AGTAGCCAAG CTGGGAGGAG CACCATTTGC CCACTGACTC TTGGGCAACG CTGCAGCCTG CATCCCAGCC 000400 000401 GGCAGAAGGC AGGTGGTATC ACAGCTGAGT TTACAGCCAC GGAAGGAACC ACTGTAGGCT TTTAGTAGAT AATATGTTTT 000480 000481 CTCTGCTTCA AATCCTTATT TTGGTTGCTT AAAATTTCTG CAGAAAACAA ACAGCTTCTG CCAAAATTGG CTCACAAAAT 000560 000561 TAGCTTACTA GTATAATCAG TTGTATAGCA AGTATTTACT GAGTAGCTCT TGGAAGGCAG TCAACACAAG AGGGATGGAT 000640 000641 CATTCTTCCA GTTCATCACA CGTGGGTTGG ACATGCTAAC AGTCCCCGAT AGCTATCAGG CGAGTAAATG GATGATCACA 000720 000721 CAAAGGCAGA GGCATCGCAG AAGGATGCTA ACTAGATGTC ATGCGTCAAG GATACTACAG AAGGATCTCT TTGCTGACAA 000800 000801 GGAGGGTACC TCTAAGGTTC CTTCAGATGG GATGGTTCTC TGTTCACCGT GATCACTACT ATGCAAAGGC CTGTGGGCCA 000880 000881 TTTAGGAGAA AAGCATTCAG TCCAATTCCA CAGACACAGT GAGGATGTAA TATGCCCTAG GCATATATGA GTGGATCCAA 000960 000961 GGAGGAAATA CTCAGTCACT ACTGTCAAGA ACTCATGACC TGCTGCAGGG TTTGCCAAAC TATGGCTTGT GGGCCAATCT 001040 001041 GGCTCACCAC CTATTTTAGT AAATAATGTT TTACTGGAAT CCAGACACGC TTGTTTGATT ACATATTGTC TATGGCTGCT 001120 001121 GAGCACCCAC TATAAGGGCA AAGTTAAGTA GATAGAGACT TTATCACCCA CAAAACCTAA AATATTTGAC TGGATGGCCC 001200 001201 TCTACAGAAA AAGCCTGCGA ACCTGTGGTC TTGTGGGAGG ACACTGCTGG GCACAGTTAA CTCTAATTCT TGGCTGTAGC 001280 001281 ATCTTGAATA GGGTGGCAGT CCCTGGCTGC TGAGGGGGAC AGCTGGACGG CTGCCTCCCA GGGGCATTTC CATGACTTGC 001360 |
Predicted Small Protein
Name | ENST00000435075.1_smProtein_74:232 |
Length | 53 |
Molecular weight | 5581.5065 |
Aromaticity | 0.0384615384615 |
Instability index | 55.0384615385 |
Isoelectric point | 9.59112548828 |
Runs | 6 |
Runs residual | 0.0349847892221 |
Runs probability | 0.0413648943061 |
Amino acid sequence | MVSRVSVMSLLLLSFSLTDEKTVASKVKQLVFDCTANKSSLSKGSLSPRSTC |
Secondary structure | LLLLHHHHHHHHHHLLLLLHHHHHHHHHHHHEELLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |