Difference between revisions of "ENST00000435075.1"

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sequence = <dnaseq>TCCACGTTGGCTGGTTTGAAACTGTGGTGTATGTTTAAGCTCAGGCTGGAAAAGGATCACTGAAAGTCACTTGGATGGTGTCTCGTGTGTCTGTGATGAGCTTGCTGTTGCTTTCTTTCTCCTTGACAGATGAGAAAACAGTGGCTTCAAAGGTTAAACAACTTGTCTTCGATTGCACAGCTAACAAGAGCTCACTGTCCAAAGGGAGTCTCTCTCCCCGGTCCACATGCTGAGGCTTGCTCCAGAGTGAATGTGTGCACTGGAAAGAACCCACACAGGCCCCCTGAGAGCTGTCAGCCTTGCCAGGCTTCTGTGAGATCCCTGGGTCCGAGTAGCCAAGCTGGGAGGAGCACCATTTGCCCACTGACTCTTGGGCAACGCTGCAGCCTGCATCCCAGCCGGCAGAAGGCAGGTGGTATCACAGCTGAGTTTACAGCCACGGAAGGAACCACTGTAGGCTTTTAGTAGATAATATGTTTTCTCTGCTTCAAATCCTTATTTTGGTTGCTTAAAATTTCTGCAGAAAACAAACAGCTTCTGCCAAAATTGGCTCACAAAATTAGCTTACTAGTATAATCAGTTGTATAGCAAGTATTTACTGAGTAGCTCTTGGAAGGCAGTCAACACAAGAGGGATGGATCATTCTTCCAGTTCATCACACGTGGGTTGGACATGCTAACAGTCCCCGATAGCTATCAGGCGAGTAAATGGATGATCACACAAAGGCAGAGGCATCGCAGAAGGATGCTAACTAGATGTCATGCGTCAAGGATACTACAGAAGGATCTCTTTGCTGACAAGGAGGGTACCTCTAAGGTTCCTTCAGATGGGATGGTTCTCTGTTCACCGTGATCACTACTATGCAAAGGCCTGTGGGCCATTTAGGAGAAAAGCATTCAGTCCAATTCCACAGACACAGTGAGGATGTAATATGCCCTAGGCATATATGAGTGGATCCAAGGAGGAAATACTCAGTCACTACTGTCAAGAACTCATGACCTGCTGCAGGGTTTGCCAAACTATGGCTTGTGGGCCAATCTGGCTCACCACCTATTTTAGTAAATAATGTTTTACTGGAATCCAGACACGCTTGTTTGATTACATATTGTCTATGGCTGCTGAGCACCCACTATAAGGGCAAAGTTAAGTAGATAGAGACTTTATCACCCACAAAACCTAAAATATTTGACTGGATGGCCCTCTACAGAAAAAGCCTGCGAACCTGTGGTCTTGTGGGAGGACACTGCTGGGCACAGTTAACTCTAATTCTTGGCTGTAGCATCTTGAATAGGGTGGCAGTCCCTGGCTGCTGAGGGGGACAGCTGGACGGCTGCCTCCCAGGGGCATTTCCATGACTTGC</dnaseq>|
 
sequence = <dnaseq>TCCACGTTGGCTGGTTTGAAACTGTGGTGTATGTTTAAGCTCAGGCTGGAAAAGGATCACTGAAAGTCACTTGGATGGTGTCTCGTGTGTCTGTGATGAGCTTGCTGTTGCTTTCTTTCTCCTTGACAGATGAGAAAACAGTGGCTTCAAAGGTTAAACAACTTGTCTTCGATTGCACAGCTAACAAGAGCTCACTGTCCAAAGGGAGTCTCTCTCCCCGGTCCACATGCTGAGGCTTGCTCCAGAGTGAATGTGTGCACTGGAAAGAACCCACACAGGCCCCCTGAGAGCTGTCAGCCTTGCCAGGCTTCTGTGAGATCCCTGGGTCCGAGTAGCCAAGCTGGGAGGAGCACCATTTGCCCACTGACTCTTGGGCAACGCTGCAGCCTGCATCCCAGCCGGCAGAAGGCAGGTGGTATCACAGCTGAGTTTACAGCCACGGAAGGAACCACTGTAGGCTTTTAGTAGATAATATGTTTTCTCTGCTTCAAATCCTTATTTTGGTTGCTTAAAATTTCTGCAGAAAACAAACAGCTTCTGCCAAAATTGGCTCACAAAATTAGCTTACTAGTATAATCAGTTGTATAGCAAGTATTTACTGAGTAGCTCTTGGAAGGCAGTCAACACAAGAGGGATGGATCATTCTTCCAGTTCATCACACGTGGGTTGGACATGCTAACAGTCCCCGATAGCTATCAGGCGAGTAAATGGATGATCACACAAAGGCAGAGGCATCGCAGAAGGATGCTAACTAGATGTCATGCGTCAAGGATACTACAGAAGGATCTCTTTGCTGACAAGGAGGGTACCTCTAAGGTTCCTTCAGATGGGATGGTTCTCTGTTCACCGTGATCACTACTATGCAAAGGCCTGTGGGCCATTTAGGAGAAAAGCATTCAGTCCAATTCCACAGACACAGTGAGGATGTAATATGCCCTAGGCATATATGAGTGGATCCAAGGAGGAAATACTCAGTCACTACTGTCAAGAACTCATGACCTGCTGCAGGGTTTGCCAAACTATGGCTTGTGGGCCAATCTGGCTCACCACCTATTTTAGTAAATAATGTTTTACTGGAATCCAGACACGCTTGTTTGATTACATATTGTCTATGGCTGCTGAGCACCCACTATAAGGGCAAAGTTAAGTAGATAGAGACTTTATCACCCACAAAACCTAAAATATTTGACTGGATGGCCCTCTACAGAAAAAGCCTGCGAACCTGTGGTCTTGTGGGAGGACACTGCTGGGCACAGTTAACTCTAATTCTTGGCTGTAGCATCTTGAATAGGGTGGCAGTCCCTGGCTGCTGAGGGGGACAGCTGGACGGCTGCCTCCCAGGGGCATTTCCATGACTTGC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:ENSG00000230876.2]][[Category:lnc-TTC27-1]]
+
[[Category:Intergenic]][[Category:ENSG00000230876.2]][[Category:lnc-TTC27-1]][[Category:Transcripts]]

Revision as of 11:51, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000435075.1

Source

Gencode19

Same with

lnc-TTC27-1:11

Classification

intergenic

Length

1360 nt

Genomic location

chr2+:33107868..33151589

Exon number

4

Exons

33107868..33107893,33123607..33123709,33127130..33127190,33150420..33151589

Genome context

Sequence
000001 TCCACGTTGG CTGGTTTGAA ACTGTGGTGT ATGTTTAAGC TCAGGCTGGA AAAGGATCAC TGAAAGTCAC TTGGATGGTG 000080
000081 TCTCGTGTGT CTGTGATGAG CTTGCTGTTG CTTTCTTTCT CCTTGACAGA TGAGAAAACA GTGGCTTCAA AGGTTAAACA 000160
000161 ACTTGTCTTC GATTGCACAG CTAACAAGAG CTCACTGTCC AAAGGGAGTC TCTCTCCCCG GTCCACATGC TGAGGCTTGC 000240
000241 TCCAGAGTGA ATGTGTGCAC TGGAAAGAAC CCACACAGGC CCCCTGAGAG CTGTCAGCCT TGCCAGGCTT CTGTGAGATC 000320
000321 CCTGGGTCCG AGTAGCCAAG CTGGGAGGAG CACCATTTGC CCACTGACTC TTGGGCAACG CTGCAGCCTG CATCCCAGCC 000400
000401 GGCAGAAGGC AGGTGGTATC ACAGCTGAGT TTACAGCCAC GGAAGGAACC ACTGTAGGCT TTTAGTAGAT AATATGTTTT 000480
000481 CTCTGCTTCA AATCCTTATT TTGGTTGCTT AAAATTTCTG CAGAAAACAA ACAGCTTCTG CCAAAATTGG CTCACAAAAT 000560
000561 TAGCTTACTA GTATAATCAG TTGTATAGCA AGTATTTACT GAGTAGCTCT TGGAAGGCAG TCAACACAAG AGGGATGGAT 000640
000641 CATTCTTCCA GTTCATCACA CGTGGGTTGG ACATGCTAAC AGTCCCCGAT AGCTATCAGG CGAGTAAATG GATGATCACA 000720
000721 CAAAGGCAGA GGCATCGCAG AAGGATGCTA ACTAGATGTC ATGCGTCAAG GATACTACAG AAGGATCTCT TTGCTGACAA 000800
000801 GGAGGGTACC TCTAAGGTTC CTTCAGATGG GATGGTTCTC TGTTCACCGT GATCACTACT ATGCAAAGGC CTGTGGGCCA 000880
000881 TTTAGGAGAA AAGCATTCAG TCCAATTCCA CAGACACAGT GAGGATGTAA TATGCCCTAG GCATATATGA GTGGATCCAA 000960
000961 GGAGGAAATA CTCAGTCACT ACTGTCAAGA ACTCATGACC TGCTGCAGGG TTTGCCAAAC TATGGCTTGT GGGCCAATCT 001040
001041 GGCTCACCAC CTATTTTAGT AAATAATGTT TTACTGGAAT CCAGACACGC TTGTTTGATT ACATATTGTC TATGGCTGCT 001120
001121 GAGCACCCAC TATAAGGGCA AAGTTAAGTA GATAGAGACT TTATCACCCA CAAAACCTAA AATATTTGAC TGGATGGCCC 001200
001201 TCTACAGAAA AAGCCTGCGA ACCTGTGGTC TTGTGGGAGG ACACTGCTGG GCACAGTTAA CTCTAATTCT TGGCTGTAGC 001280
001281 ATCTTGAATA GGGTGGCAGT CCCTGGCTGC TGAGGGGGAC AGCTGGACGG CTGCCTCCCA GGGGCATTTC CATGACTTGC 001360
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Predicted Small Protein

Name ENST00000435075.1_smProtein_74:232
Length 53
Molecular weight 5581.5065
Aromaticity 0.0384615384615
Instability index 55.0384615385
Isoelectric point 9.59112548828
Runs 6
Runs residual 0.0349847892221
Runs probability 0.0413648943061
Amino acid sequence MVSRVSVMSLLLLSFSLTDEKTVASKVKQLVFDCTANKSSLSKGSLSPRSTC
Secondary structure LLLLHHHHHHHHHHLLLLLHHHHHHHHHHHHEELLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -