Difference between revisions of "ENST00000437795.1"

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==Annotated Information==
 
==Annotated Information==
 
===Name===
 
===Name===
LINC00570
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===Characteristics===
 
===Characteristics===
Multiple 2-4 exon isoforms with variation in splicing and TSSs. Isoforms between 380 nt and 1.3kb. Intergenic between ROCK2 and E2F6. In-vitro translation showed no sign of protein product.
 
  
 
===Function===
 
===Function===
LINC00570 expression appears to stimulate ROCK2 gene expression (in HeLa cells).
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===Expression===
 
===Expression===
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==References==
 
==References==
Please input cited references here.
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[http://www.lncrnadb.org/LINC00570/ Annotation originally sourced from lncRNAdb.]
  
 
{{basic|
 
{{basic|
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sequence = <dnaseq>AGAGCCCCAGAGGCAGAGCTGCCCAAGGCTTTGGGAGCCCACCTCTTGCATCACTGTGCCCTGGATGTGAGACGTGGAATCAAGGAGATTATTTTGGAGCTTTAAGACGTAATGGCACCCTGCTGGGTTTCAGACTTGAGTGGAGCCTGCAGCCTTTCTTTCGGCCGGTTTCTCCCTTTTGGAACGGGAGTATTTACCCAATGCCTGTACCCCCATGACGTGCCCGTGTCCCCTTCCTCCACCACAAGATTGTAAGTTTTCTGGAGCCTCCCCAGAAGCTGAGAAGAAGCTGCTATGCTTCCTGTTCAGCCTGCAGAACCGCCACTTCCAGCATCGATGGTGTCAGGTCAGGTCCTCTGGGTAGAAGAAATGGAGTCAGTTAGGAGTGCTGGAGACTGAGTAAGAGGTGGCAGCTGAGGCTTACTACCCCAGGAAAGGGATGCCACCAGAGAAGGCAGACAACCAAGATGGCGACTCTCAATTTTTGAGC</dnaseq>|
 
sequence = <dnaseq>AGAGCCCCAGAGGCAGAGCTGCCCAAGGCTTTGGGAGCCCACCTCTTGCATCACTGTGCCCTGGATGTGAGACGTGGAATCAAGGAGATTATTTTGGAGCTTTAAGACGTAATGGCACCCTGCTGGGTTTCAGACTTGAGTGGAGCCTGCAGCCTTTCTTTCGGCCGGTTTCTCCCTTTTGGAACGGGAGTATTTACCCAATGCCTGTACCCCCATGACGTGCCCGTGTCCCCTTCCTCCACCACAAGATTGTAAGTTTTCTGGAGCCTCCCCAGAAGCTGAGAAGAAGCTGCTATGCTTCCTGTTCAGCCTGCAGAACCGCCACTTCCAGCATCGATGGTGTCAGGTCAGGTCCTCTGGGTAGAAGAAATGGAGTCAGTTAGGAGTGCTGGAGACTGAGTAAGAGGTGGCAGCTGAGGCTTACTACCCCAGGAAAGGGATGCCACCAGAGAAGGCAGACAACCAAGATGGCGACTCTCAATTTTTGAGC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:lnc-GREB1-4]][[Category:NONHSAG027008]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 11:26, 30 June 2016

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Annotated Information

Name

Characteristics

Function

Expression

Expressed in HeLa cells.

Conservation

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Misc

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Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

Annotation originally sourced from lncRNAdb.

Basic Information

Transcript ID

ENST00000437795.1

Source

Gencode19

Same with

lnc-GREB1-4:2,NONHSAT069165

Classification

intergenic

Length

490 nt

Genomic location

chr2+:11539128..11542234

Exon number

4

Exons

11539128..11539344,11539798..11539900,11540498..11540583,11542151..11542234

Genome context

Sequence
000001 AGAGCCCCAG AGGCAGAGCT GCCCAAGGCT TTGGGAGCCC ACCTCTTGCA TCACTGTGCC CTGGATGTGA GACGTGGAAT 000080
000081 CAAGGAGATT ATTTTGGAGC TTTAAGACGT AATGGCACCC TGCTGGGTTT CAGACTTGAG TGGAGCCTGC AGCCTTTCTT 000160
000161 TCGGCCGGTT TCTCCCTTTT GGAACGGGAG TATTTACCCA ATGCCTGTAC CCCCATGACG TGCCCGTGTC CCCTTCCTCC 000240
000241 ACCACAAGAT TGTAAGTTTT CTGGAGCCTC CCCAGAAGCT GAGAAGAAGC TGCTATGCTT CCTGTTCAGC CTGCAGAACC 000320
000321 GCCACTTCCA GCATCGATGG TGTCAGGTCA GGTCCTCTGG GTAGAAGAAA TGGAGTCAGT TAGGAGTGCT GGAGACTGAG 000400
000401 TAAGAGGTGG CAGCTGAGGC TTACTACCCC AGGAAAGGGA TGCCACCAGA GAAGGCAGAC AACCAAGATG GCGACTCTCA 000480
000481 ATTTTTGAGC
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