ENST00000438026.1

From LncRNAWiki
Revision as of 18:44, 15 October 2014 by 211.100.51.162 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000438026.1

Source

Gencode19

Same with

lnc-BCOR-5:1,NONHSAT136664

Classification

intergenic

Length

828 nt

Genomic location

chrX-:39085356..39159040

Exon number

3

Exons

39085356..39085949,39158617..39158786,39158977..39159040

Genome context

Sequence
000001 ACCCTGGAGA AAGAATCTTA CAAAGAATAC TAAAGAGCAT CCAAGTGTGA AGAATGAAAC ACACAGATGA GCCCCAAGAG 000080
000081 GATGAGGAAG GGAGAGGCTG GTGGGGGTCT GATTCTCATC TCCACCTTAA CAGAATGCAC ATGAAGTCCA GCCATGGTGT 000160
000161 AGCCAAGGAG ACCCACTAAG ACCACCAAAA GCTTGGAAAT GAGGATGCAG GGGCAAAGGA CGGCATTATA GGCGCCCTGA 000240
000241 CTCCAGCTTG GGAGTGGGGT GTCCAGGGAC CCTCCAGGAT CGATGACAAC AGACTGAGGG GCAGCTGCAA AACAACTGGA 000320
000321 ACAAATCAAA CCAAGGCCAA ACGTTAACTG CCTCTGGCAA CTTCTCCTCT TTCTTCGCCT CTCTCCCAGG ACCCAGAAAG 000400
000401 GCTAAAGGTT CAGGTCATAA AATCCAAACT CCCCGACCCA CAAATCATCA TTTCCAGCCT GAGGGAGACA CCCAACCCTG 000480
000481 CCAAGGTCTT CAAGGACACA CATTAGTCAT CGGATCAGCC CTGCCCATCC CACCTCCAAG GCCCTTTCAT TTCCACACTC 000560
000561 CTCAGATTGT TCCATGAGTG GTAGCCAAAT AAAAAGTCCA GGAGGTTCTA AGGGAGCCCT GGGTCTTACC TGGAATTGTG 000640
000641 TGTTACTGGC AACTAATTCC TGTGGACCGA CCCAGGGGAG CTAAGGTTGT CTTTTAGCCC CCCCATGCAG AGGCCAGAAG 000720
000721 ACCTCACACT TTTACCAGCC ACAAGCCAGA GATCCCTGCT GTGAGCAGAT GGAGCCTGAG CCACGACCTG CACACGTGTC 000800
000801 CTGAATGAGA TTTGTTCTCC CAGGAGAA
[back to top]

Predicted Small Protein

Name ENST00000438026.1_smProtein_53:178
Length 42
Molecular weight 4809.1727
Aromaticity 0.0487804878049
Instability index 53.9048780488
Isoelectric point 6.00335693359
Runs 6
Runs residual 0.0296274128385
Runs probability 0.0475622681505
Amino acid sequence MKHTDEPQEDEEGRGWWGSDSHLHLNRMHMKSSHGVAKETH
Secondary structure LLLLLLLLLLLLLLLEELLLLHHHHHHHEEELLLLLLLLLL
PRMN -
PiMo -