ENST00000438026.1
Revision as of 18:44, 15 October 2014 by 211.100.51.162 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000438026.1 |
Source |
Gencode19 |
Same with |
lnc-BCOR-5:1,NONHSAT136664 |
Classification |
intergenic |
Length |
828 nt |
Genomic location |
chrX-:39085356..39159040 |
Exon number |
3 |
Exons |
39085356..39085949,39158617..39158786,39158977..39159040 |
Genome context |
|
Sequence |
000001 ACCCTGGAGA AAGAATCTTA CAAAGAATAC TAAAGAGCAT CCAAGTGTGA AGAATGAAAC ACACAGATGA GCCCCAAGAG 000080
000081 GATGAGGAAG GGAGAGGCTG GTGGGGGTCT GATTCTCATC TCCACCTTAA CAGAATGCAC ATGAAGTCCA GCCATGGTGT 000160 000161 AGCCAAGGAG ACCCACTAAG ACCACCAAAA GCTTGGAAAT GAGGATGCAG GGGCAAAGGA CGGCATTATA GGCGCCCTGA 000240 000241 CTCCAGCTTG GGAGTGGGGT GTCCAGGGAC CCTCCAGGAT CGATGACAAC AGACTGAGGG GCAGCTGCAA AACAACTGGA 000320 000321 ACAAATCAAA CCAAGGCCAA ACGTTAACTG CCTCTGGCAA CTTCTCCTCT TTCTTCGCCT CTCTCCCAGG ACCCAGAAAG 000400 000401 GCTAAAGGTT CAGGTCATAA AATCCAAACT CCCCGACCCA CAAATCATCA TTTCCAGCCT GAGGGAGACA CCCAACCCTG 000480 000481 CCAAGGTCTT CAAGGACACA CATTAGTCAT CGGATCAGCC CTGCCCATCC CACCTCCAAG GCCCTTTCAT TTCCACACTC 000560 000561 CTCAGATTGT TCCATGAGTG GTAGCCAAAT AAAAAGTCCA GGAGGTTCTA AGGGAGCCCT GGGTCTTACC TGGAATTGTG 000640 000641 TGTTACTGGC AACTAATTCC TGTGGACCGA CCCAGGGGAG CTAAGGTTGT CTTTTAGCCC CCCCATGCAG AGGCCAGAAG 000720 000721 ACCTCACACT TTTACCAGCC ACAAGCCAGA GATCCCTGCT GTGAGCAGAT GGAGCCTGAG CCACGACCTG CACACGTGTC 000800 000801 CTGAATGAGA TTTGTTCTCC CAGGAGAA |
Predicted Small Protein
Name | ENST00000438026.1_smProtein_53:178 |
Length | 42 |
Molecular weight | 4809.1727 |
Aromaticity | 0.0487804878049 |
Instability index | 53.9048780488 |
Isoelectric point | 6.00335693359 |
Runs | 6 |
Runs residual | 0.0296274128385 |
Runs probability | 0.0475622681505 |
Amino acid sequence | MKHTDEPQEDEEGRGWWGSDSHLHLNRMHMKSSHGVAKETH |
Secondary structure | LLLLLLLLLLLLLLLEELLLLHHHHHHHEEELLLLLLLLLL |
PRMN | - |
PiMo | - |