Difference between revisions of "ENST00000444042.2"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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[[Category:Overlapping(AS)]] | [[Category:Overlapping(AS)]] | ||
[[Category:Antisense]] | [[Category:Antisense]] | ||
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| + | {{lncrnadb| | ||
| + | tID = ENST00000444042.2| | ||
| + | ltID = CYP4A22-AS1| | ||
| + | ann = <tab class=wikitable sep=tab head=top> | ||
| + | Section Description | ||
| + | ID CYP4A22-AS1 | ||
| + | Characteristics Spliced, up to 4 exons, ~920 nt transcript ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))].Loci covers ~ 80kb and is antisense to CYP4A22 and CYP4Z1 ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. Transcribed bidirectionally with [http://www.lncrnadb.org/Detail.aspx?TKeyID=276 PDZK1IP1-AS1], downstream from TAL1 and PDZK1IP1 on same strand ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. In-vitro translation showed no sign of protein product ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. | ||
| + | Expression Expressed and functionally characterized in MCF7 cells ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. CYP4A22-AS1 identified as enriched in K562, HelaS3 and HepG2 nuclear fractions ([http://www.ncbi.nlm.nih.gov/pubmed/22955988 Derrien (2012))]. | ||
| + | Function CYP4A22-AS1 expression stimulates TAL1 gene expression (in MCF7 cells) ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. | ||
| + | </tab>| | ||
| + | }} | ||
Revision as of 10:25, 6 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000444042.2 |
| Source |
Gencode19 |
| Same with |
lnc-PDZK1IP1-2:1,NONHSAT003050 |
| Classification |
overlapping(AS),antisense |
| Length |
921 nt |
| Genomic location |
chr1-:47562325..47644943 |
| Exon number |
4 |
| Exons |
47562325..47562849,47642707..47642741,47643843..47644121,47644862..47644943 |
| Genome context |
|
| Sequence |
000001 GAAGTTGAGC TTCAGGCGCG GCTCTTCCCC GTCACACTGG GACCGGACGC ATTTCCATGG CGTGGTCCCA GGAACCTCTC 000080
000081 AGAGTGAACT GAATTGGATG CAAGATCACG GTGCGTCAGA GCTAGCAAGA TCCTTAGGAT CATTTAGCCT GGTTTACTAA 000160 000161 TATTACACTA TGGAATTTAA GCCCAAGGAA TGGAGAGTAC CCGACGAGCG TTATGTAAGG AGTCGAGTGA GAAGTAAGCT 000240 000241 GGATGCTCTG CTTGGCTGGC AGGTACAGAA TGTGCCAGAC CCATCTGTAC CAGCCTGGAT CTCTTGAGGC ATCAGCACAA 000320 000321 TGGACCTGGC CACACCAGTT TATTCCACAC CGCTGAGGCT GGTCTTTGAG GAATCACCAC ACTGTCTTCC ACAATGCACC 000400 000401 ATGGAATACT ATGCAGACAT AAAAAGGAAT GAGATCATGT CGTTTGCAGG GACATGGATG GAGCTAGAAG CCATTATCCT 000480 000481 CAGAAAACTA ACACAGGAAC AGAAAACCAA ATACCACATG TTCTCACTTA TAAGTGGGAG CTGAATGATG AGAACACATG 000560 000561 GACACGTGGT GCGGGAACAA TACACCTGGG GCCTGTTGGA GGGTGGGGGC TGGGAGGAGG GAGAGCATCA AGAATAGCTA 000640 000641 ATGAGGCCAG GCACAGTGGC TCACGCCTGT AATCCTAGCA TTTTGGGAGG CTGAGGCGGG CAGATCATTT GAGGTCAGGA 000720 000721 GTTTGAGACC AGCCTGGCCA ATATGGTGAA ACCCCGTCTC TATTAAAAAT ACAAAAATAT TAGCCAGGCA TGGTGGCAAT 000800 000801 GCCCGTAGTC CCTGCAACTT GGGAGGCTGA GGCAGGAGAA TCGTTTGAAC CTGGGAGGTG GAGTTTGCAG TGAGCCAAGA 000880 000881 TCGCGCCACT GCACTCCAGC CTGGGCGACA GAGTGAGGCT C |
Annotation (From lncRNAdb)
| Section | Description |
|---|---|
| ID | CYP4A22-AS1 |
| Characteristics | Spliced, up to 4 exons, ~920 nt transcript (Arom (2010)).Loci covers ~ 80kb and is antisense to CYP4A22 and CYP4Z1 (Arom (2010)). Transcribed bidirectionally with PDZK1IP1-AS1, downstream from TAL1 and PDZK1IP1 on same strand (Arom (2010)). In-vitro translation showed no sign of protein product (Arom (2010)). |
| Expression | Expressed and functionally characterized in MCF7 cells (Arom (2010)). CYP4A22-AS1 identified as enriched in K562, HelaS3 and HepG2 nuclear fractions (Derrien (2012)). |
| Function | CYP4A22-AS1 expression stimulates TAL1 gene expression (in MCF7 cells) (Arom (2010)). |
