ENST00000444375.1
Revision as of 18:41, 15 October 2014 by 211.100.51.162 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000444375.1 |
Source |
Gencode19 |
Same with |
lnc-TCTN3-1:5,NONHSAT015792 |
Classification |
intergenic |
Length |
617 nt |
Genomic location |
chr10-:97848666..97849956 |
Exon number |
2 |
Exons |
97848666..97849064,97849739..97849956 |
Genome context |
|
Sequence |
000001 ACTGTCATGG CTGCTGTCAG TGAGGGCCCG TAATGGAGAT CGAGTCAAGG GTTGCCCAGG GACACTTAAG AGCCTTCGGC 000080
000081 TTCAAGGAGG CCTCTCAAAG GACAAAGGAT GAGACTGCCT GGCGGCAGAG TGCCCCCCAC AATCGTAGGA ACTGTGTCGC 000160 000161 CGCGCTTCCC GTTAACTTGC CGCTAAGTTT TTCTAGAAAA GTCGCCCTTC TTGCCAGGGG TGTCCTATAG ACTTTGTCAT 000240 000241 GGAGTGAAAC AGAAACAAAT GTGAGTTAAT CATTAACATT TCCTAGTGGT TAAAATTACT TTTTAAGCGC TTAACTGTGT 000320 000321 ATTTTTTAGA TTGAAGATTT CAAATGAAAT TTTGATTTGA CTGAAATATT TAATATGTGA TGAGTTGATA TTAAAATACA 000400 000401 GAAGATTACT ATTTTTATAG AAACAATAAT GTAGAAACTA ATATTTGAAG CAGGTTTACT CCACATACTG TGTTATAATT 000480 000481 TAAATTTTCA CTTAAACTCT CAAAATCAGA AGAGCTGACC TAGTAAGGCT TAAACCTCTA AAACTTGTGG TTTTAACAAG 000560 000561 GCTTAATATA CGTAGTTATA ATAGTTTTTA AAAAAATTGT TATCAAGTTC CTCAGGT |
Predicted Small Protein
Name | ENST00000444375.1_smProtein_32:229 |
Length | 66 |
Molecular weight | 7287.3161 |
Aromaticity | 0.0615384615385 |
Instability index | 63.7861538462 |
Isoelectric point | 11.2343139648 |
Runs | 11 |
Runs residual | 0.0189423076923 |
Runs probability | 0.0484334601981 |
Amino acid sequence | MEIESRVAQGHLRAFGFKEASQRTKDETAWRQSAPHNRRNCVAALPVNLPLSFSRKVALL ARGVL |
Secondary structure | LLLHHHHHHHHHHHLLLLHHHHLLHHHHHHHHLLLLLLLLEELLLLLLLLLLHHHHHHHH HLLLL |
PRMN | - |
PiMo | - |