Difference between revisions of "ENST00000450909.3"
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sequence = <dnaseq>GGTGATGCCGAGCTGAAGCTGGGAAGCGGATGTGAGGGAAGAGTTCCAGGCAGAGGGAAGGCAAATGCAGAGATCCTCAGGCAGGAACACTGAACTGTTCTCCGTATTTGAGGAGCAGAGGGCGTGTCAGTGGTGGCCGCAGCAGCTGAGCAAAGGTCTTAGAATCCCAGCTAATGTCGTGGGACCTAGCACCCAATCCCAAAAGAAAGAAGAATAGATAGGAACCCACTGTTGACAAGAAGGTGCACTGAGAAGTGTTTTTATCTGACCCGATCTGCATCCAGTTTAGAAGCCGATACATCAGGGATTTAACAATCTGTCTTAATGTCTAGCAAGGGGGGTTGCTGGAGGGAAAACACAGAGTCAGAGTTCTATCTTCAGCCCTGCCAGCAGGTCCCTGGGAGATGCTAGACGAGTGACTTTTCTCTGGGCGTGGTTGGTGTAAGGGATGCACACGCAGGAGGAAGGTCGGAGTGTAAATGTGTGACCTGGGCCTGTTACTGGGTATAAATGGGCCTGTAGTGACCGGGAGCTCATGTTCTACCAAAGGGGTTGCCAATTTTCTGATTTCGAGTGTGGCGGTGTAAAAGAGAAAAGCAACTGCTGCCAGCTGGGAGCTGGTTTGCACCCTCACTCCAGAAGCCTTGATGTTGCTAGGAGCTGACCTGGCACCAACAGCACGGCCATGGTGGTGTCCTGTTGAGCAAAATAATTTCACAAAAAACATCAGACAAGGTCACTCTCTGACTGATCTAGAAAAAGACCATTCCATAATAAAGCCTCAATACAGAAACAAGAACATTGTCCAAACCACAAAAATTACCAACACAATCCTCTCTCCCACAGCGTAAGTTACTGCTGCTTTTTTTTTGGTTGTTGTTTTTGTTTGTTTTGTTTTGTTTTTGAAATGAAGTCTTGCTCTGTTACCCAGGCTGGAGTGCAGTGATGCAATCTTGGCTTACCACAACCTCCACCTCCAGGTTCAAGCGATTCTCCTGCCTCAGCTTCCAGAGTATCTGGGATTACAGGCACCCACCATCATGCCCAGATCATTTCTGTATTTTTAGTAGAGACGGGGATTCACCAAGTTGCCCAGGTGCTTCCTGGTGGTCCTTGGTTGGAGGGTACTATCAGAAATGGAGGAGCAACAAAGATTCAGCTGAAGCCCTCACTGCCTGGGACTGGGACCCTTGACTCGTCATTGTATGCACACCTGAAACTGCTTATGTCGCTGAGGTGCCAACCTGCTGATGGTTGGAAGCTAATTGAGTTCTGATATTGTGTTGATACCCTTAAGCATTGGGTTTACTTTTTATTTTAATTAATTAATTAATTAATTTTTGAGACAGAGTTTCACTCTTGTTGCCCAGGCTGAAGTGCAATGACACGATCTCGGCTCACCGCAACCTCCGCCTCCTGGGTTCAAGCAGTTCTTCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGCATGCACCACCACACCTGGCTAATTTTATATTTGTAGTAGAGACAGTTTCTCCATGTTTGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCATGCCTGGCCATATTTTTTATTTTTCATTTTTTACTTTTTGAGATAGGGTCTCACTCTGTTGACCAGGCTGGAGTGCAGTGGTACGACTCAGCTCACTGCAACCTCTGCTTCCCAGCTCAAGTGATTCTCCAGTTTCAGCCTCCTGAGTA</dnaseq>| | sequence = <dnaseq>GGTGATGCCGAGCTGAAGCTGGGAAGCGGATGTGAGGGAAGAGTTCCAGGCAGAGGGAAGGCAAATGCAGAGATCCTCAGGCAGGAACACTGAACTGTTCTCCGTATTTGAGGAGCAGAGGGCGTGTCAGTGGTGGCCGCAGCAGCTGAGCAAAGGTCTTAGAATCCCAGCTAATGTCGTGGGACCTAGCACCCAATCCCAAAAGAAAGAAGAATAGATAGGAACCCACTGTTGACAAGAAGGTGCACTGAGAAGTGTTTTTATCTGACCCGATCTGCATCCAGTTTAGAAGCCGATACATCAGGGATTTAACAATCTGTCTTAATGTCTAGCAAGGGGGGTTGCTGGAGGGAAAACACAGAGTCAGAGTTCTATCTTCAGCCCTGCCAGCAGGTCCCTGGGAGATGCTAGACGAGTGACTTTTCTCTGGGCGTGGTTGGTGTAAGGGATGCACACGCAGGAGGAAGGTCGGAGTGTAAATGTGTGACCTGGGCCTGTTACTGGGTATAAATGGGCCTGTAGTGACCGGGAGCTCATGTTCTACCAAAGGGGTTGCCAATTTTCTGATTTCGAGTGTGGCGGTGTAAAAGAGAAAAGCAACTGCTGCCAGCTGGGAGCTGGTTTGCACCCTCACTCCAGAAGCCTTGATGTTGCTAGGAGCTGACCTGGCACCAACAGCACGGCCATGGTGGTGTCCTGTTGAGCAAAATAATTTCACAAAAAACATCAGACAAGGTCACTCTCTGACTGATCTAGAAAAAGACCATTCCATAATAAAGCCTCAATACAGAAACAAGAACATTGTCCAAACCACAAAAATTACCAACACAATCCTCTCTCCCACAGCGTAAGTTACTGCTGCTTTTTTTTTGGTTGTTGTTTTTGTTTGTTTTGTTTTGTTTTTGAAATGAAGTCTTGCTCTGTTACCCAGGCTGGAGTGCAGTGATGCAATCTTGGCTTACCACAACCTCCACCTCCAGGTTCAAGCGATTCTCCTGCCTCAGCTTCCAGAGTATCTGGGATTACAGGCACCCACCATCATGCCCAGATCATTTCTGTATTTTTAGTAGAGACGGGGATTCACCAAGTTGCCCAGGTGCTTCCTGGTGGTCCTTGGTTGGAGGGTACTATCAGAAATGGAGGAGCAACAAAGATTCAGCTGAAGCCCTCACTGCCTGGGACTGGGACCCTTGACTCGTCATTGTATGCACACCTGAAACTGCTTATGTCGCTGAGGTGCCAACCTGCTGATGGTTGGAAGCTAATTGAGTTCTGATATTGTGTTGATACCCTTAAGCATTGGGTTTACTTTTTATTTTAATTAATTAATTAATTAATTTTTGAGACAGAGTTTCACTCTTGTTGCCCAGGCTGAAGTGCAATGACACGATCTCGGCTCACCGCAACCTCCGCCTCCTGGGTTCAAGCAGTTCTTCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGCATGCACCACCACACCTGGCTAATTTTATATTTGTAGTAGAGACAGTTTCTCCATGTTTGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCATGCCTGGCCATATTTTTTATTTTTCATTTTTTACTTTTTGAGATAGGGTCTCACTCTGTTGACCAGGCTGGAGTGCAGTGGTACGACTCAGCTCACTGCAACCTCTGCTTCCCAGCTCAAGTGATTCTCCAGTTTCAGCCTCCTGAGTA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-ASPHD1-1]][[Category:NONHSAG019061]] | + | [[Category:Intergenic]][[Category:lnc-ASPHD1-1]][[Category:NONHSAG019061]][[Category:ENSG00000247735.2]] |
Revision as of 18:42, 15 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000450909.3 |
Source |
Gencode19 |
Same with |
lnc-ASPHD1-1:1,NONHSAT141672 |
Classification |
intergenic |
Length |
1762 nt |
Genomic location |
chr16+:29938157..29940254 |
Exon number |
2 |
Exons |
29938157..29939252,29939589..29940254 |
Genome context |
|
Sequence |
000001 GGTGATGCCG AGCTGAAGCT GGGAAGCGGA TGTGAGGGAA GAGTTCCAGG CAGAGGGAAG GCAAATGCAG AGATCCTCAG 000080
000081 GCAGGAACAC TGAACTGTTC TCCGTATTTG AGGAGCAGAG GGCGTGTCAG TGGTGGCCGC AGCAGCTGAG CAAAGGTCTT 000160 000161 AGAATCCCAG CTAATGTCGT GGGACCTAGC ACCCAATCCC AAAAGAAAGA AGAATAGATA GGAACCCACT GTTGACAAGA 000240 000241 AGGTGCACTG AGAAGTGTTT TTATCTGACC CGATCTGCAT CCAGTTTAGA AGCCGATACA TCAGGGATTT AACAATCTGT 000320 000321 CTTAATGTCT AGCAAGGGGG GTTGCTGGAG GGAAAACACA GAGTCAGAGT TCTATCTTCA GCCCTGCCAG CAGGTCCCTG 000400 000401 GGAGATGCTA GACGAGTGAC TTTTCTCTGG GCGTGGTTGG TGTAAGGGAT GCACACGCAG GAGGAAGGTC GGAGTGTAAA 000480 000481 TGTGTGACCT GGGCCTGTTA CTGGGTATAA ATGGGCCTGT AGTGACCGGG AGCTCATGTT CTACCAAAGG GGTTGCCAAT 000560 000561 TTTCTGATTT CGAGTGTGGC GGTGTAAAAG AGAAAAGCAA CTGCTGCCAG CTGGGAGCTG GTTTGCACCC TCACTCCAGA 000640 000641 AGCCTTGATG TTGCTAGGAG CTGACCTGGC ACCAACAGCA CGGCCATGGT GGTGTCCTGT TGAGCAAAAT AATTTCACAA 000720 000721 AAAACATCAG ACAAGGTCAC TCTCTGACTG ATCTAGAAAA AGACCATTCC ATAATAAAGC CTCAATACAG AAACAAGAAC 000800 000801 ATTGTCCAAA CCACAAAAAT TACCAACACA ATCCTCTCTC CCACAGCGTA AGTTACTGCT GCTTTTTTTT TGGTTGTTGT 000880 000881 TTTTGTTTGT TTTGTTTTGT TTTTGAAATG AAGTCTTGCT CTGTTACCCA GGCTGGAGTG CAGTGATGCA ATCTTGGCTT 000960 000961 ACCACAACCT CCACCTCCAG GTTCAAGCGA TTCTCCTGCC TCAGCTTCCA GAGTATCTGG GATTACAGGC ACCCACCATC 001040 001041 ATGCCCAGAT CATTTCTGTA TTTTTAGTAG AGACGGGGAT TCACCAAGTT GCCCAGGTGC TTCCTGGTGG TCCTTGGTTG 001120 001121 GAGGGTACTA TCAGAAATGG AGGAGCAACA AAGATTCAGC TGAAGCCCTC ACTGCCTGGG ACTGGGACCC TTGACTCGTC 001200 001201 ATTGTATGCA CACCTGAAAC TGCTTATGTC GCTGAGGTGC CAACCTGCTG ATGGTTGGAA GCTAATTGAG TTCTGATATT 001280 001281 GTGTTGATAC CCTTAAGCAT TGGGTTTACT TTTTATTTTA ATTAATTAAT TAATTAATTT TTGAGACAGA GTTTCACTCT 001360 001361 TGTTGCCCAG GCTGAAGTGC AATGACACGA TCTCGGCTCA CCGCAACCTC CGCCTCCTGG GTTCAAGCAG TTCTTCTGCC 001440 001441 TCAGCCTCTT GAGTAGCTGG GATTACAGGC ATGCACCACC ACACCTGGCT AATTTTATAT TTGTAGTAGA GACAGTTTCT 001520 001521 CCATGTTTGT CAGGCTGGTC TCAAACTCCT GACCTCAGGT GATCCACCCG CCTCGGCCTC CCAAAGTGCT AGGATTACAG 001600 001601 GCGTGAGCCA CCATGCCTGG CCATATTTTT TATTTTTCAT TTTTTACTTT TTGAGATAGG GTCTCACTCT GTTGACCAGG 001680 001681 CTGGAGTGCA GTGGTACGAC TCAGCTCACT GCAACCTCTG CTTCCCAGCT CAAGTGATTC TCCAGTTTCA GCCTCCTGAG 001760 001761 TA |
Predicted Small Protein
Name | ENST00000450909.3_smProtein_647:850 |
Length | 68 |
Molecular weight | 7629.6473 |
Aromaticity | 0.0597014925373 |
Instability index | 40.6044776119 |
Isoelectric point | 9.42816162109 |
Runs | 9 |
Runs residual | 0.00898648120653 |
Runs probability | 0.0220907181691 |
Amino acid sequence | MLLGADLAPTARPWWCPVEQNNFTKNIRQGHSLTDLEKDHSIIKPQYRNKNIVQTTKITN TILSPTA |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLEELLLLLLLLEEEEEEEEL EEELLLL |
PRMN | - |
PiMo | - |