Difference between revisions of "ENST00000450909.3"

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sequence = <dnaseq>GGTGATGCCGAGCTGAAGCTGGGAAGCGGATGTGAGGGAAGAGTTCCAGGCAGAGGGAAGGCAAATGCAGAGATCCTCAGGCAGGAACACTGAACTGTTCTCCGTATTTGAGGAGCAGAGGGCGTGTCAGTGGTGGCCGCAGCAGCTGAGCAAAGGTCTTAGAATCCCAGCTAATGTCGTGGGACCTAGCACCCAATCCCAAAAGAAAGAAGAATAGATAGGAACCCACTGTTGACAAGAAGGTGCACTGAGAAGTGTTTTTATCTGACCCGATCTGCATCCAGTTTAGAAGCCGATACATCAGGGATTTAACAATCTGTCTTAATGTCTAGCAAGGGGGGTTGCTGGAGGGAAAACACAGAGTCAGAGTTCTATCTTCAGCCCTGCCAGCAGGTCCCTGGGAGATGCTAGACGAGTGACTTTTCTCTGGGCGTGGTTGGTGTAAGGGATGCACACGCAGGAGGAAGGTCGGAGTGTAAATGTGTGACCTGGGCCTGTTACTGGGTATAAATGGGCCTGTAGTGACCGGGAGCTCATGTTCTACCAAAGGGGTTGCCAATTTTCTGATTTCGAGTGTGGCGGTGTAAAAGAGAAAAGCAACTGCTGCCAGCTGGGAGCTGGTTTGCACCCTCACTCCAGAAGCCTTGATGTTGCTAGGAGCTGACCTGGCACCAACAGCACGGCCATGGTGGTGTCCTGTTGAGCAAAATAATTTCACAAAAAACATCAGACAAGGTCACTCTCTGACTGATCTAGAAAAAGACCATTCCATAATAAAGCCTCAATACAGAAACAAGAACATTGTCCAAACCACAAAAATTACCAACACAATCCTCTCTCCCACAGCGTAAGTTACTGCTGCTTTTTTTTTGGTTGTTGTTTTTGTTTGTTTTGTTTTGTTTTTGAAATGAAGTCTTGCTCTGTTACCCAGGCTGGAGTGCAGTGATGCAATCTTGGCTTACCACAACCTCCACCTCCAGGTTCAAGCGATTCTCCTGCCTCAGCTTCCAGAGTATCTGGGATTACAGGCACCCACCATCATGCCCAGATCATTTCTGTATTTTTAGTAGAGACGGGGATTCACCAAGTTGCCCAGGTGCTTCCTGGTGGTCCTTGGTTGGAGGGTACTATCAGAAATGGAGGAGCAACAAAGATTCAGCTGAAGCCCTCACTGCCTGGGACTGGGACCCTTGACTCGTCATTGTATGCACACCTGAAACTGCTTATGTCGCTGAGGTGCCAACCTGCTGATGGTTGGAAGCTAATTGAGTTCTGATATTGTGTTGATACCCTTAAGCATTGGGTTTACTTTTTATTTTAATTAATTAATTAATTAATTTTTGAGACAGAGTTTCACTCTTGTTGCCCAGGCTGAAGTGCAATGACACGATCTCGGCTCACCGCAACCTCCGCCTCCTGGGTTCAAGCAGTTCTTCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGCATGCACCACCACACCTGGCTAATTTTATATTTGTAGTAGAGACAGTTTCTCCATGTTTGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCATGCCTGGCCATATTTTTTATTTTTCATTTTTTACTTTTTGAGATAGGGTCTCACTCTGTTGACCAGGCTGGAGTGCAGTGGTACGACTCAGCTCACTGCAACCTCTGCTTCCCAGCTCAAGTGATTCTCCAGTTTCAGCCTCCTGAGTA</dnaseq>|
 
sequence = <dnaseq>GGTGATGCCGAGCTGAAGCTGGGAAGCGGATGTGAGGGAAGAGTTCCAGGCAGAGGGAAGGCAAATGCAGAGATCCTCAGGCAGGAACACTGAACTGTTCTCCGTATTTGAGGAGCAGAGGGCGTGTCAGTGGTGGCCGCAGCAGCTGAGCAAAGGTCTTAGAATCCCAGCTAATGTCGTGGGACCTAGCACCCAATCCCAAAAGAAAGAAGAATAGATAGGAACCCACTGTTGACAAGAAGGTGCACTGAGAAGTGTTTTTATCTGACCCGATCTGCATCCAGTTTAGAAGCCGATACATCAGGGATTTAACAATCTGTCTTAATGTCTAGCAAGGGGGGTTGCTGGAGGGAAAACACAGAGTCAGAGTTCTATCTTCAGCCCTGCCAGCAGGTCCCTGGGAGATGCTAGACGAGTGACTTTTCTCTGGGCGTGGTTGGTGTAAGGGATGCACACGCAGGAGGAAGGTCGGAGTGTAAATGTGTGACCTGGGCCTGTTACTGGGTATAAATGGGCCTGTAGTGACCGGGAGCTCATGTTCTACCAAAGGGGTTGCCAATTTTCTGATTTCGAGTGTGGCGGTGTAAAAGAGAAAAGCAACTGCTGCCAGCTGGGAGCTGGTTTGCACCCTCACTCCAGAAGCCTTGATGTTGCTAGGAGCTGACCTGGCACCAACAGCACGGCCATGGTGGTGTCCTGTTGAGCAAAATAATTTCACAAAAAACATCAGACAAGGTCACTCTCTGACTGATCTAGAAAAAGACCATTCCATAATAAAGCCTCAATACAGAAACAAGAACATTGTCCAAACCACAAAAATTACCAACACAATCCTCTCTCCCACAGCGTAAGTTACTGCTGCTTTTTTTTTGGTTGTTGTTTTTGTTTGTTTTGTTTTGTTTTTGAAATGAAGTCTTGCTCTGTTACCCAGGCTGGAGTGCAGTGATGCAATCTTGGCTTACCACAACCTCCACCTCCAGGTTCAAGCGATTCTCCTGCCTCAGCTTCCAGAGTATCTGGGATTACAGGCACCCACCATCATGCCCAGATCATTTCTGTATTTTTAGTAGAGACGGGGATTCACCAAGTTGCCCAGGTGCTTCCTGGTGGTCCTTGGTTGGAGGGTACTATCAGAAATGGAGGAGCAACAAAGATTCAGCTGAAGCCCTCACTGCCTGGGACTGGGACCCTTGACTCGTCATTGTATGCACACCTGAAACTGCTTATGTCGCTGAGGTGCCAACCTGCTGATGGTTGGAAGCTAATTGAGTTCTGATATTGTGTTGATACCCTTAAGCATTGGGTTTACTTTTTATTTTAATTAATTAATTAATTAATTTTTGAGACAGAGTTTCACTCTTGTTGCCCAGGCTGAAGTGCAATGACACGATCTCGGCTCACCGCAACCTCCGCCTCCTGGGTTCAAGCAGTTCTTCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGCATGCACCACCACACCTGGCTAATTTTATATTTGTAGTAGAGACAGTTTCTCCATGTTTGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCATGCCTGGCCATATTTTTTATTTTTCATTTTTTACTTTTTGAGATAGGGTCTCACTCTGTTGACCAGGCTGGAGTGCAGTGGTACGACTCAGCTCACTGCAACCTCTGCTTCCCAGCTCAAGTGATTCTCCAGTTTCAGCCTCCTGAGTA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-ASPHD1-1]][[Category:NONHSAG019061]]
+
[[Category:Intergenic]][[Category:lnc-ASPHD1-1]][[Category:NONHSAG019061]][[Category:ENSG00000247735.2]]

Revision as of 18:42, 15 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000450909.3

Source

Gencode19

Same with

lnc-ASPHD1-1:1,NONHSAT141672

Classification

intergenic

Length

1762 nt

Genomic location

chr16+:29938157..29940254

Exon number

2

Exons

29938157..29939252,29939589..29940254

Genome context

Sequence
000001 GGTGATGCCG AGCTGAAGCT GGGAAGCGGA TGTGAGGGAA GAGTTCCAGG CAGAGGGAAG GCAAATGCAG AGATCCTCAG 000080
000081 GCAGGAACAC TGAACTGTTC TCCGTATTTG AGGAGCAGAG GGCGTGTCAG TGGTGGCCGC AGCAGCTGAG CAAAGGTCTT 000160
000161 AGAATCCCAG CTAATGTCGT GGGACCTAGC ACCCAATCCC AAAAGAAAGA AGAATAGATA GGAACCCACT GTTGACAAGA 000240
000241 AGGTGCACTG AGAAGTGTTT TTATCTGACC CGATCTGCAT CCAGTTTAGA AGCCGATACA TCAGGGATTT AACAATCTGT 000320
000321 CTTAATGTCT AGCAAGGGGG GTTGCTGGAG GGAAAACACA GAGTCAGAGT TCTATCTTCA GCCCTGCCAG CAGGTCCCTG 000400
000401 GGAGATGCTA GACGAGTGAC TTTTCTCTGG GCGTGGTTGG TGTAAGGGAT GCACACGCAG GAGGAAGGTC GGAGTGTAAA 000480
000481 TGTGTGACCT GGGCCTGTTA CTGGGTATAA ATGGGCCTGT AGTGACCGGG AGCTCATGTT CTACCAAAGG GGTTGCCAAT 000560
000561 TTTCTGATTT CGAGTGTGGC GGTGTAAAAG AGAAAAGCAA CTGCTGCCAG CTGGGAGCTG GTTTGCACCC TCACTCCAGA 000640
000641 AGCCTTGATG TTGCTAGGAG CTGACCTGGC ACCAACAGCA CGGCCATGGT GGTGTCCTGT TGAGCAAAAT AATTTCACAA 000720
000721 AAAACATCAG ACAAGGTCAC TCTCTGACTG ATCTAGAAAA AGACCATTCC ATAATAAAGC CTCAATACAG AAACAAGAAC 000800
000801 ATTGTCCAAA CCACAAAAAT TACCAACACA ATCCTCTCTC CCACAGCGTA AGTTACTGCT GCTTTTTTTT TGGTTGTTGT 000880
000881 TTTTGTTTGT TTTGTTTTGT TTTTGAAATG AAGTCTTGCT CTGTTACCCA GGCTGGAGTG CAGTGATGCA ATCTTGGCTT 000960
000961 ACCACAACCT CCACCTCCAG GTTCAAGCGA TTCTCCTGCC TCAGCTTCCA GAGTATCTGG GATTACAGGC ACCCACCATC 001040
001041 ATGCCCAGAT CATTTCTGTA TTTTTAGTAG AGACGGGGAT TCACCAAGTT GCCCAGGTGC TTCCTGGTGG TCCTTGGTTG 001120
001121 GAGGGTACTA TCAGAAATGG AGGAGCAACA AAGATTCAGC TGAAGCCCTC ACTGCCTGGG ACTGGGACCC TTGACTCGTC 001200
001201 ATTGTATGCA CACCTGAAAC TGCTTATGTC GCTGAGGTGC CAACCTGCTG ATGGTTGGAA GCTAATTGAG TTCTGATATT 001280
001281 GTGTTGATAC CCTTAAGCAT TGGGTTTACT TTTTATTTTA ATTAATTAAT TAATTAATTT TTGAGACAGA GTTTCACTCT 001360
001361 TGTTGCCCAG GCTGAAGTGC AATGACACGA TCTCGGCTCA CCGCAACCTC CGCCTCCTGG GTTCAAGCAG TTCTTCTGCC 001440
001441 TCAGCCTCTT GAGTAGCTGG GATTACAGGC ATGCACCACC ACACCTGGCT AATTTTATAT TTGTAGTAGA GACAGTTTCT 001520
001521 CCATGTTTGT CAGGCTGGTC TCAAACTCCT GACCTCAGGT GATCCACCCG CCTCGGCCTC CCAAAGTGCT AGGATTACAG 001600
001601 GCGTGAGCCA CCATGCCTGG CCATATTTTT TATTTTTCAT TTTTTACTTT TTGAGATAGG GTCTCACTCT GTTGACCAGG 001680
001681 CTGGAGTGCA GTGGTACGAC TCAGCTCACT GCAACCTCTG CTTCCCAGCT CAAGTGATTC TCCAGTTTCA GCCTCCTGAG 001760
001761 TA
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Predicted Small Protein

Name ENST00000450909.3_smProtein_647:850
Length 68
Molecular weight 7629.6473
Aromaticity 0.0597014925373
Instability index 40.6044776119
Isoelectric point 9.42816162109
Runs 9
Runs residual 0.00898648120653
Runs probability 0.0220907181691
Amino acid sequence MLLGADLAPTARPWWCPVEQNNFTKNIRQGHSLTDLEKDHSIIKPQYRNKNIVQTTKITN
TILSPTA
Secondary structure LLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLEELLLLLLLLEEEEEEEEL
EEELLLL
PRMN -
PiMo -