ENST00000452714.1
Revision as of 11:20, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000452714.1 |
Source |
Gencode19 |
Same with |
lnc-ZNF277-1:1 |
Classification |
antisense |
Length |
2494 nt |
Genomic location |
chr7+:111448572..111461829 |
Exon number |
2 |
Exons |
111448572..111448669,111459434..111461829 |
Genome context |
|
Sequence |
000001 AAATTCTGAA AGGTTGCCTC ATCGCTGGAA ATATGTGTAA TGTTGGAGCA ATGCTAGATT ATAAAATTTA TCGTTAATTA 000080
000081 ATAATGAAAC ACACAAAGAT TGAGCAGTTG TTGTCATCAG AAACATCTAC CAGGAACTTA CAGGGGGTCA TGAGATAGCT 000160 000161 CTACAGCAAA CAAGAAAGAG AAGAAATGCT TCTTGCCCTG GCAGAATTAT AAGTGGGCAC ACTTGCTATG TTATACAATA 000240 000241 TTAGGCATGC AGTAGAAAAA AACAAGGAAC CATACAAATC ACCAGGTGTC TGGTCACAAA CTCTGGCAGA GCTTCACACC 000320 000321 AAGCAGGCAA GCTACAAGAT TTGGAACAAC ACAGCTTATA GATGAAAGTT AAAGGCATTT AATTTACTTG AAAACAGAGG 000400 000401 AAGAAAGGAC CAACACATAA AAGAACATTC ATTTTGAGGG ATGAGCAATT CAATTGAGTT CAAGGGTAGA GCAATGGTGA 000480 000481 CTTCTCAGCC ACCTGCTATC AATTTGACAT GTATTAAGCA CACGACTGGG TTAATAAAAG TGGGAGTTTG GGTTAAAATG 000560 000561 CCCTTTGAGA GGCCCTGAAA AAATGTTTGT CTAAGAAAGT TGAAACTATG GAAGAAAAGG TGGTCAACTT CAGAGACATA 000640 000641 GATGTAACTC CTGCAACGTG CTTCAACATG GTTTAGCCAA GCGGAAACTT TTTCTTCCTA GTGTATGCTC TTTAACGTAT 000720 000721 TTAAGATGTC CTTAACATCT TTCAGAAATC TACTTTTCTA CCAATATTAT ATGGGTTAAT ATTTTTCATA GATAAAGCAC 000800 000801 AAATAGTAGA GGGCTAATTT TCAGACTATG CTGCATTTAT GAAGCAAAGC AAACCTCATC TGCTTTCATG ACTTGAATGG 000880 000881 AGGAGAATGG TTAGAGACTA TTAAAAGAGG AGAGGAGAGG AAAGAAGAGG CAAGAGCAAG AACATACAGC AGACTGGCTG 000960 000961 CTCCAACTTG GCAGTGGTCT CTCTAGTTCC TGGAGTCCTG TCCATGAATG AGGTTGGACT TGCAGCCACC AGCCATTGCC 001040 001041 AGTGGAGAGG CAGCGCCAGA CTCCTACCAG CACTCACATG GGTGGCAATG GAATGAAGTC ACCACATTTA GCAAAGGGTG 001120 001121 ATGGCACATT TCTTGGGTTT GCTATGGGAG TAACCTTCTG TTTAAATGTA TTACACAGAG CTCATCTCTA ACAAAATCAT 001200 001201 CTTCCTATTT GGTTAACACT GTAAATGAAA ATTCTGAACA GTGTGTGTTT ACGCAAAGGT AGAATCTATA CTCTCAGACT 001280 001281 GCTATCCATT TGTGTGACCA TAAAGTCTTT AAAACTGAAG TAACGATGGG GCAGAGAGAG GCAGTATTTA ATATCAAAAA 001360 001361 GCCACATGGT TGTTACAATT TTAGGCAAGC TTAAGCAGAA ATTGTATATG TAAGGAATAA AATGTCAATG TTACTTTCAG 001440 001441 TTTGAATTTC TACCACTGAA ATTTTAATTC AATCCAAAAT ATTCCTCTGC ACATGAGTCA GGCAGAATGA CCAAATGTTG 001520 001521 ATGCTGCGTG ATGATGATGT CCATAGCCTG GACCTCTTCC CATCTGGCTC CTTGGATTAC CTCACAGCCC TTCCTAGGTA 001600 001601 CCCAGAATGT TTGCTCTTTG GTTATAAGGC CAGATGAATG AGCAAAAACT CCCACCTAAA TCTGTAGCAT GCGGACAACC 001680 001681 AAATGAATAG ATATTTGATT CTACTCACAG ATATCAAACT AAATATGTTA AATTCTAAAG AGAGCTATTT CAACACTCTC 001760 001761 AATCTTCAAA ATGGAAAAGC TGCTTCTGTA CTTATGTAAA ATATAATATG CTATGTTATA CTATTTGTTA CTTCACAAAG 001840 001841 TTTTTAACAC ATCATTTTAA CACCTCCAAG TCTATAAATG TATACTGCAG CAGAAGCCAT ATTGAGCATA TATAATCAAA 001920 001921 ATCGAATCCT ATATTCCTGC AGCTCTCACC ACCATCAAAG CTTGCCATCT GGAGAAAACA CAGGGCGACC GTGGCCTACA 002000 002001 GATAGATGCT TAGAGAATCC AACCTTCATC CTGAGCATGA GGGTGTTGGC GTTTGGAAAA GAGGAAGAAG GGGAAGCAGG 002080 002081 CAAATGTGGG CTTGGAGAGT GACAATGCTA ATGAAATAGG GTAAATAACA AGCTTGGAAG TGAAGACCAG GCCAGTTTCC 002160 002161 TAGAACACTT TTCCATTCTG TATCTTGAGA CTATGGAGAC AGGAAGTGGA GAGAGCAGAT AAATCCATGA CACTGTACTC 002240 002241 TCCGGGATCA GCTCCTGCCA TTCCGACTGC CCTAATATCC TTTCCTGCCT CCTCTCTCTT CTAGTATTGC TCTCAGATCA 002320 002321 TGCTGGATAT GCTTAATATA AACTGAATTT ATCATCTTCT AGAGATTCCA ATATCGACTT TATGTCAATA ACCTCCCAAA 002400 002401 TGCCTGTATT TTGTTCTGAA GTTTCCTCGG GGCAGTATTT TCAGCTCTCT ATTGGCCATA CCACTTGGAT GAATAAAAAG 002480 002481 AACGTCAATC TCCA |
Predicted Small Protein
Name | ENST00000452714.1_smProtein_1877:2101 |
Length | 75 |
Molecular weight | 8214.1173 |
Aromaticity | 0.0810810810811 |
Instability index | 42.0797297297 |
Isoelectric point | 5.51995849609 |
Runs | 7 |
Runs residual | 0.0480553724456 |
Runs probability | 0.0475433416611 |
Amino acid sequence | MYTAAEAILSIYNQNRILYSCSSHHHQSLPSGENTGRPWPTDRCLENPTFILSMRVLAFG KEEEGEAGKCGLGE |
Secondary structure | LLHHHHHHHHHHHLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEEL LLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |