Difference between revisions of "ENST00000461145.1"

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sequence = <dnaseq>AGCACAAAATAATTCCCAAGTTCAAGATTTATTTCTGCCTTCTGGAGACATGGTCTCTGTCACTGGAAAAGAAAAAGAGTCAGGGCCTTCCGTGCTTGTAGGATTTGGATGTAGAGGTGGTGGGAATGTCTCTGGACTTGGGACAGCACCTCCGATGTCTATGAATAGGACGGACTCACTGGTGTGTCCTCCACATGTTCTTGAGGAAGTTAACAAGGCTAAACAAGGAACTCACTGTCCTGCCTGCTCAGAAGACTCAGCACAAGAGAACACACAGCAAGACTCAAAGTTTTGGAACTGCAAGAAAGCAGAAACCTGGCTCCTTCTGGCTCTCAGATCTTATGACTCAACAAAGAATTTAAAAAGAATATTCTCCCTATTGAAAGGTCTCAATTTTCCCATCTCTATGGACAGGCGGTAAAATGAGATAGTTTACATGAAATGCTGTCTGGCCCTCAGCAGGAGCTCAGTAAGTATTGGTCTTCTTCCCTCTTGCAGATCCACTCCCCAGAGTCTGTCTTTCCAGAGTTTCTCTGCTCCAATTCATTTCATATCCTATTGCCAGATGACTTCTGCTAAAGCCAACCTCATTCTCTCTCCTCCGTGCTCAAGCCTTGTGGCTTCCCACTGTCTGTCAGAGTGAAGTGCACACCAAAGGCCTAGGTTTTAGGCCCTTCCTGTGTGACTCTCCTCACCAGCACAATCTCCTTTCTCTCTTCCCTCCTTCACACACTCAGTGCCATAGCCAACTGGGCAGCTGGCTCACCCTTCTCCATGCCCTGCTTCATGCCCTGCTTGTCCGCAGCCTTTGCTGACGCTGGAGAGAAGGCACTTCCTCTCCAGCCTTGCAACCTTCTAGCTCAGCATGACCCTTAGCCCTCAGAAAGATACACTTATCTTCTAATGACATGGAAATGATCAACTGAGCTTGATTTGTAGCAAATAATAGAATAAATAATAACGCACACATATAATTGACCCAACTTTTGGAACTCTGCAGGGATCATTTAATTTCTCAAAGTTAGATAATGTTTATGTGAAGCAGATGCTACTACTAAATATATAAATACACATTTATAATAACTTAGTGTATTTGTGGGTATGTGAGTATAGATAGGGAGAGAGATGCTCAGAGAAGATGGAGATAGATATAAGCTAGACAATAGCTTTCTATATAAACATTTACATCTTTCTATCTAGCAAATTAGTTTGAGAAGGAAAAGTCATTTGCAGATACTCTCTAGTGAAGTATTAATTTCCAAATGTTATCGGCTGACCAACTATATCCTTTTATGTAAGAAGCATATTGCAGACATTAAATACTCTATTGTGAAGACTGAAAACGACCTAAACTATTCCAACAATTGGTATATGGTTATAGAAATTATGGTATACTCACATTATGAGCTATTACACAGCCATAAAAATGATGTTTTTGG</dnaseq>|
 
sequence = <dnaseq>AGCACAAAATAATTCCCAAGTTCAAGATTTATTTCTGCCTTCTGGAGACATGGTCTCTGTCACTGGAAAAGAAAAAGAGTCAGGGCCTTCCGTGCTTGTAGGATTTGGATGTAGAGGTGGTGGGAATGTCTCTGGACTTGGGACAGCACCTCCGATGTCTATGAATAGGACGGACTCACTGGTGTGTCCTCCACATGTTCTTGAGGAAGTTAACAAGGCTAAACAAGGAACTCACTGTCCTGCCTGCTCAGAAGACTCAGCACAAGAGAACACACAGCAAGACTCAAAGTTTTGGAACTGCAAGAAAGCAGAAACCTGGCTCCTTCTGGCTCTCAGATCTTATGACTCAACAAAGAATTTAAAAAGAATATTCTCCCTATTGAAAGGTCTCAATTTTCCCATCTCTATGGACAGGCGGTAAAATGAGATAGTTTACATGAAATGCTGTCTGGCCCTCAGCAGGAGCTCAGTAAGTATTGGTCTTCTTCCCTCTTGCAGATCCACTCCCCAGAGTCTGTCTTTCCAGAGTTTCTCTGCTCCAATTCATTTCATATCCTATTGCCAGATGACTTCTGCTAAAGCCAACCTCATTCTCTCTCCTCCGTGCTCAAGCCTTGTGGCTTCCCACTGTCTGTCAGAGTGAAGTGCACACCAAAGGCCTAGGTTTTAGGCCCTTCCTGTGTGACTCTCCTCACCAGCACAATCTCCTTTCTCTCTTCCCTCCTTCACACACTCAGTGCCATAGCCAACTGGGCAGCTGGCTCACCCTTCTCCATGCCCTGCTTCATGCCCTGCTTGTCCGCAGCCTTTGCTGACGCTGGAGAGAAGGCACTTCCTCTCCAGCCTTGCAACCTTCTAGCTCAGCATGACCCTTAGCCCTCAGAAAGATACACTTATCTTCTAATGACATGGAAATGATCAACTGAGCTTGATTTGTAGCAAATAATAGAATAAATAATAACGCACACATATAATTGACCCAACTTTTGGAACTCTGCAGGGATCATTTAATTTCTCAAAGTTAGATAATGTTTATGTGAAGCAGATGCTACTACTAAATATATAAATACACATTTATAATAACTTAGTGTATTTGTGGGTATGTGAGTATAGATAGGGAGAGAGATGCTCAGAGAAGATGGAGATAGATATAAGCTAGACAATAGCTTTCTATATAAACATTTACATCTTTCTATCTAGCAAATTAGTTTGAGAAGGAAAAGTCATTTGCAGATACTCTCTAGTGAAGTATTAATTTCCAAATGTTATCGGCTGACCAACTATATCCTTTTATGTAAGAAGCATATTGCAGACATTAAATACTCTATTGTGAAGACTGAAAACGACCTAAACTATTCCAACAATTGGTATATGGTTATAGAAATTATGGTATACTCACATTATGAGCTATTACACAGCCATAAAAATGATGTTTTTGG</dnaseq>|
 
}}
 
}}
[[Category:Intronic(AS)]][[Category:lnc-KIAA1147-5]][[Category:NONHSAG048968]]
+
[[Category:Intronic(AS)]][[Category:lnc-KIAA1147-5]][[Category:NONHSAG048968]][[Category:ENSG00000204990.3]]

Revision as of 18:16, 15 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000461145.1

Source

Gencode19

Same with

lnc-KIAA1147-5:1,NONHSAT123711

Classification

intronic(AS)

Length

1439 nt

Genomic location

chr7-:141114183..141116190

Exon number

2

Exons

141114183..141115235,141115805..141116190

Genome context

Sequence
000001 AGCACAAAAT AATTCCCAAG TTCAAGATTT ATTTCTGCCT TCTGGAGACA TGGTCTCTGT CACTGGAAAA GAAAAAGAGT 000080
000081 CAGGGCCTTC CGTGCTTGTA GGATTTGGAT GTAGAGGTGG TGGGAATGTC TCTGGACTTG GGACAGCACC TCCGATGTCT 000160
000161 ATGAATAGGA CGGACTCACT GGTGTGTCCT CCACATGTTC TTGAGGAAGT TAACAAGGCT AAACAAGGAA CTCACTGTCC 000240
000241 TGCCTGCTCA GAAGACTCAG CACAAGAGAA CACACAGCAA GACTCAAAGT TTTGGAACTG CAAGAAAGCA GAAACCTGGC 000320
000321 TCCTTCTGGC TCTCAGATCT TATGACTCAA CAAAGAATTT AAAAAGAATA TTCTCCCTAT TGAAAGGTCT CAATTTTCCC 000400
000401 ATCTCTATGG ACAGGCGGTA AAATGAGATA GTTTACATGA AATGCTGTCT GGCCCTCAGC AGGAGCTCAG TAAGTATTGG 000480
000481 TCTTCTTCCC TCTTGCAGAT CCACTCCCCA GAGTCTGTCT TTCCAGAGTT TCTCTGCTCC AATTCATTTC ATATCCTATT 000560
000561 GCCAGATGAC TTCTGCTAAA GCCAACCTCA TTCTCTCTCC TCCGTGCTCA AGCCTTGTGG CTTCCCACTG TCTGTCAGAG 000640
000641 TGAAGTGCAC ACCAAAGGCC TAGGTTTTAG GCCCTTCCTG TGTGACTCTC CTCACCAGCA CAATCTCCTT TCTCTCTTCC 000720
000721 CTCCTTCACA CACTCAGTGC CATAGCCAAC TGGGCAGCTG GCTCACCCTT CTCCATGCCC TGCTTCATGC CCTGCTTGTC 000800
000801 CGCAGCCTTT GCTGACGCTG GAGAGAAGGC ACTTCCTCTC CAGCCTTGCA ACCTTCTAGC TCAGCATGAC CCTTAGCCCT 000880
000881 CAGAAAGATA CACTTATCTT CTAATGACAT GGAAATGATC AACTGAGCTT GATTTGTAGC AAATAATAGA ATAAATAATA 000960
000961 ACGCACACAT ATAATTGACC CAACTTTTGG AACTCTGCAG GGATCATTTA ATTTCTCAAA GTTAGATAAT GTTTATGTGA 001040
001041 AGCAGATGCT ACTACTAAAT ATATAAATAC ACATTTATAA TAACTTAGTG TATTTGTGGG TATGTGAGTA TAGATAGGGA 001120
001121 GAGAGATGCT CAGAGAAGAT GGAGATAGAT ATAAGCTAGA CAATAGCTTT CTATATAAAC ATTTACATCT TTCTATCTAG 001200
001201 CAAATTAGTT TGAGAAGGAA AAGTCATTTG CAGATACTCT CTAGTGAAGT ATTAATTTCC AAATGTTATC GGCTGACCAA 001280
001281 CTATATCCTT TTATGTAAGA AGCATATTGC AGACATTAAA TACTCTATTG TGAAGACTGA AAACGACCTA AACTATTCCA 001360
001361 ACAATTGGTA TATGGTTATA GAAATTATGG TATACTCACA TTATGAGCTA TTACACAGCC ATAAAAATGA TGTTTTTGG
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Predicted Small Protein

Name ENST00000461145.1_smProtein_194:361
Length 56
Molecular weight 6498.5481
Aromaticity 0.0727272727273
Instability index 43.8
Isoelectric point 11.8583374023
Runs 10
Runs residual 0.030303030303
Runs probability 0.0197049991168
Amino acid sequence MFLRKLTRLNKELTVLPAQKTQHKRTHSKTQSFGTARKQKPGSFWLSDLMTQQRI
Secondary structure LHHHHHHHHLLLEEEELLLLLLLLLLLLLLLLLLEEELLLLLLEEEHHHHHHLLL
PRMN -
PiMo -