Difference between revisions of "ENST00000461145.1"
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sequence = <dnaseq>AGCACAAAATAATTCCCAAGTTCAAGATTTATTTCTGCCTTCTGGAGACATGGTCTCTGTCACTGGAAAAGAAAAAGAGTCAGGGCCTTCCGTGCTTGTAGGATTTGGATGTAGAGGTGGTGGGAATGTCTCTGGACTTGGGACAGCACCTCCGATGTCTATGAATAGGACGGACTCACTGGTGTGTCCTCCACATGTTCTTGAGGAAGTTAACAAGGCTAAACAAGGAACTCACTGTCCTGCCTGCTCAGAAGACTCAGCACAAGAGAACACACAGCAAGACTCAAAGTTTTGGAACTGCAAGAAAGCAGAAACCTGGCTCCTTCTGGCTCTCAGATCTTATGACTCAACAAAGAATTTAAAAAGAATATTCTCCCTATTGAAAGGTCTCAATTTTCCCATCTCTATGGACAGGCGGTAAAATGAGATAGTTTACATGAAATGCTGTCTGGCCCTCAGCAGGAGCTCAGTAAGTATTGGTCTTCTTCCCTCTTGCAGATCCACTCCCCAGAGTCTGTCTTTCCAGAGTTTCTCTGCTCCAATTCATTTCATATCCTATTGCCAGATGACTTCTGCTAAAGCCAACCTCATTCTCTCTCCTCCGTGCTCAAGCCTTGTGGCTTCCCACTGTCTGTCAGAGTGAAGTGCACACCAAAGGCCTAGGTTTTAGGCCCTTCCTGTGTGACTCTCCTCACCAGCACAATCTCCTTTCTCTCTTCCCTCCTTCACACACTCAGTGCCATAGCCAACTGGGCAGCTGGCTCACCCTTCTCCATGCCCTGCTTCATGCCCTGCTTGTCCGCAGCCTTTGCTGACGCTGGAGAGAAGGCACTTCCTCTCCAGCCTTGCAACCTTCTAGCTCAGCATGACCCTTAGCCCTCAGAAAGATACACTTATCTTCTAATGACATGGAAATGATCAACTGAGCTTGATTTGTAGCAAATAATAGAATAAATAATAACGCACACATATAATTGACCCAACTTTTGGAACTCTGCAGGGATCATTTAATTTCTCAAAGTTAGATAATGTTTATGTGAAGCAGATGCTACTACTAAATATATAAATACACATTTATAATAACTTAGTGTATTTGTGGGTATGTGAGTATAGATAGGGAGAGAGATGCTCAGAGAAGATGGAGATAGATATAAGCTAGACAATAGCTTTCTATATAAACATTTACATCTTTCTATCTAGCAAATTAGTTTGAGAAGGAAAAGTCATTTGCAGATACTCTCTAGTGAAGTATTAATTTCCAAATGTTATCGGCTGACCAACTATATCCTTTTATGTAAGAAGCATATTGCAGACATTAAATACTCTATTGTGAAGACTGAAAACGACCTAAACTATTCCAACAATTGGTATATGGTTATAGAAATTATGGTATACTCACATTATGAGCTATTACACAGCCATAAAAATGATGTTTTTGG</dnaseq>| | sequence = <dnaseq>AGCACAAAATAATTCCCAAGTTCAAGATTTATTTCTGCCTTCTGGAGACATGGTCTCTGTCACTGGAAAAGAAAAAGAGTCAGGGCCTTCCGTGCTTGTAGGATTTGGATGTAGAGGTGGTGGGAATGTCTCTGGACTTGGGACAGCACCTCCGATGTCTATGAATAGGACGGACTCACTGGTGTGTCCTCCACATGTTCTTGAGGAAGTTAACAAGGCTAAACAAGGAACTCACTGTCCTGCCTGCTCAGAAGACTCAGCACAAGAGAACACACAGCAAGACTCAAAGTTTTGGAACTGCAAGAAAGCAGAAACCTGGCTCCTTCTGGCTCTCAGATCTTATGACTCAACAAAGAATTTAAAAAGAATATTCTCCCTATTGAAAGGTCTCAATTTTCCCATCTCTATGGACAGGCGGTAAAATGAGATAGTTTACATGAAATGCTGTCTGGCCCTCAGCAGGAGCTCAGTAAGTATTGGTCTTCTTCCCTCTTGCAGATCCACTCCCCAGAGTCTGTCTTTCCAGAGTTTCTCTGCTCCAATTCATTTCATATCCTATTGCCAGATGACTTCTGCTAAAGCCAACCTCATTCTCTCTCCTCCGTGCTCAAGCCTTGTGGCTTCCCACTGTCTGTCAGAGTGAAGTGCACACCAAAGGCCTAGGTTTTAGGCCCTTCCTGTGTGACTCTCCTCACCAGCACAATCTCCTTTCTCTCTTCCCTCCTTCACACACTCAGTGCCATAGCCAACTGGGCAGCTGGCTCACCCTTCTCCATGCCCTGCTTCATGCCCTGCTTGTCCGCAGCCTTTGCTGACGCTGGAGAGAAGGCACTTCCTCTCCAGCCTTGCAACCTTCTAGCTCAGCATGACCCTTAGCCCTCAGAAAGATACACTTATCTTCTAATGACATGGAAATGATCAACTGAGCTTGATTTGTAGCAAATAATAGAATAAATAATAACGCACACATATAATTGACCCAACTTTTGGAACTCTGCAGGGATCATTTAATTTCTCAAAGTTAGATAATGTTTATGTGAAGCAGATGCTACTACTAAATATATAAATACACATTTATAATAACTTAGTGTATTTGTGGGTATGTGAGTATAGATAGGGAGAGAGATGCTCAGAGAAGATGGAGATAGATATAAGCTAGACAATAGCTTTCTATATAAACATTTACATCTTTCTATCTAGCAAATTAGTTTGAGAAGGAAAAGTCATTTGCAGATACTCTCTAGTGAAGTATTAATTTCCAAATGTTATCGGCTGACCAACTATATCCTTTTATGTAAGAAGCATATTGCAGACATTAAATACTCTATTGTGAAGACTGAAAACGACCTAAACTATTCCAACAATTGGTATATGGTTATAGAAATTATGGTATACTCACATTATGAGCTATTACACAGCCATAAAAATGATGTTTTTGG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intronic(AS)]][[Category:lnc-KIAA1147-5]][[Category:NONHSAG048968]] | + | [[Category:Intronic(AS)]][[Category:lnc-KIAA1147-5]][[Category:NONHSAG048968]][[Category:ENSG00000204990.3]] |
Revision as of 18:16, 15 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000461145.1 |
Source |
Gencode19 |
Same with |
lnc-KIAA1147-5:1,NONHSAT123711 |
Classification |
intronic(AS) |
Length |
1439 nt |
Genomic location |
chr7-:141114183..141116190 |
Exon number |
2 |
Exons |
141114183..141115235,141115805..141116190 |
Genome context |
|
Sequence |
000001 AGCACAAAAT AATTCCCAAG TTCAAGATTT ATTTCTGCCT TCTGGAGACA TGGTCTCTGT CACTGGAAAA GAAAAAGAGT 000080
000081 CAGGGCCTTC CGTGCTTGTA GGATTTGGAT GTAGAGGTGG TGGGAATGTC TCTGGACTTG GGACAGCACC TCCGATGTCT 000160 000161 ATGAATAGGA CGGACTCACT GGTGTGTCCT CCACATGTTC TTGAGGAAGT TAACAAGGCT AAACAAGGAA CTCACTGTCC 000240 000241 TGCCTGCTCA GAAGACTCAG CACAAGAGAA CACACAGCAA GACTCAAAGT TTTGGAACTG CAAGAAAGCA GAAACCTGGC 000320 000321 TCCTTCTGGC TCTCAGATCT TATGACTCAA CAAAGAATTT AAAAAGAATA TTCTCCCTAT TGAAAGGTCT CAATTTTCCC 000400 000401 ATCTCTATGG ACAGGCGGTA AAATGAGATA GTTTACATGA AATGCTGTCT GGCCCTCAGC AGGAGCTCAG TAAGTATTGG 000480 000481 TCTTCTTCCC TCTTGCAGAT CCACTCCCCA GAGTCTGTCT TTCCAGAGTT TCTCTGCTCC AATTCATTTC ATATCCTATT 000560 000561 GCCAGATGAC TTCTGCTAAA GCCAACCTCA TTCTCTCTCC TCCGTGCTCA AGCCTTGTGG CTTCCCACTG TCTGTCAGAG 000640 000641 TGAAGTGCAC ACCAAAGGCC TAGGTTTTAG GCCCTTCCTG TGTGACTCTC CTCACCAGCA CAATCTCCTT TCTCTCTTCC 000720 000721 CTCCTTCACA CACTCAGTGC CATAGCCAAC TGGGCAGCTG GCTCACCCTT CTCCATGCCC TGCTTCATGC CCTGCTTGTC 000800 000801 CGCAGCCTTT GCTGACGCTG GAGAGAAGGC ACTTCCTCTC CAGCCTTGCA ACCTTCTAGC TCAGCATGAC CCTTAGCCCT 000880 000881 CAGAAAGATA CACTTATCTT CTAATGACAT GGAAATGATC AACTGAGCTT GATTTGTAGC AAATAATAGA ATAAATAATA 000960 000961 ACGCACACAT ATAATTGACC CAACTTTTGG AACTCTGCAG GGATCATTTA ATTTCTCAAA GTTAGATAAT GTTTATGTGA 001040 001041 AGCAGATGCT ACTACTAAAT ATATAAATAC ACATTTATAA TAACTTAGTG TATTTGTGGG TATGTGAGTA TAGATAGGGA 001120 001121 GAGAGATGCT CAGAGAAGAT GGAGATAGAT ATAAGCTAGA CAATAGCTTT CTATATAAAC ATTTACATCT TTCTATCTAG 001200 001201 CAAATTAGTT TGAGAAGGAA AAGTCATTTG CAGATACTCT CTAGTGAAGT ATTAATTTCC AAATGTTATC GGCTGACCAA 001280 001281 CTATATCCTT TTATGTAAGA AGCATATTGC AGACATTAAA TACTCTATTG TGAAGACTGA AAACGACCTA AACTATTCCA 001360 001361 ACAATTGGTA TATGGTTATA GAAATTATGG TATACTCACA TTATGAGCTA TTACACAGCC ATAAAAATGA TGTTTTTGG |
Predicted Small Protein
Name | ENST00000461145.1_smProtein_194:361 |
Length | 56 |
Molecular weight | 6498.5481 |
Aromaticity | 0.0727272727273 |
Instability index | 43.8 |
Isoelectric point | 11.8583374023 |
Runs | 10 |
Runs residual | 0.030303030303 |
Runs probability | 0.0197049991168 |
Amino acid sequence | MFLRKLTRLNKELTVLPAQKTQHKRTHSKTQSFGTARKQKPGSFWLSDLMTQQRI |
Secondary structure | LHHHHHHHHLLLEEEELLLLLLLLLLLLLLLLLLEEELLLLLLEEEHHHHHHLLL |
PRMN | - |
PiMo | - |