Difference between revisions of "ENST00000505083.1"

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sequence = <dnaseq>CAAACTCCGGTGACCATAAGAATCACCTGGAGAGCTTGTTAAAGCACAGATTTGTGGTCCCCTCACCTGAGATTCTGATTCAGTGGGTCTGGAGGGGGGACTTTGCATTTCTAATAAGCTCCCAAGTGATGCTGCATAGGGCTGCCACAAATAGTAGGGGCTCAGTCAAGTTAGTATAATAGGATTTTTTTTCCTCTTATGTTGAAGTCCATAGGCAGGTAGTCCAGCCTAGTACCAAGGTTTCAGAACCTAGGCTTTTCCCCCTCTCCTTCCTGCCTTAAATGGCATTTGGTTTCCTACTCATGTTTCAGAATGTTTGCTTGAGCTACAGCCATCATGTCCACATTCAAACCAGTAAGAAAGAGGAAGGGGGAAAGGATGTCTTCTCTCTTTTTAAGGACATATCTCAGAAGTTGTATGTGACACTCTACTTACATCTTCTTAGCCAAAACTTCCTCACAAATCACACTAGCTGCAAAGAAATCTGGAAAATATAGTTTTTATTTGGGGTGTCATATGCCCAGCTAAAAATCAAGGTTTTATGATCAAGGCAGAAGAGAATGCACTTCTGACATTACTGATTTTTAATGTTACAGCAAACCTTTCCCAACTCTCCAGCCAGAGGTTTGCAATCTAAAACCTGCAATGGGCTAGGAAATTACAATAAAATTCTGAATTTCAAATTCTGATCACCCCTCTACAGGTAAGTATTATTTCTTTCATTTCTGTGTTCAAGAAATTGAGTCTCAGAGAGCTTCAGTGACTTTCCTGAGATCTCTCGGTAACTAAATGCCCCAACCAAGATTTAAACTCAACCCTGCCAAAGCCCAGGCTTCTAATGCGTCATTCTACATCACAGGAATCCCACATGTGTTTGCAGGATGAGCCTTGAATCAACCAACTACTGTTGCATACTATGCAACCACAAAACTCTGAGACCTAGACACTTATTTTACTACCATGTCTACAAGTCAACTGGAGACCAGCTGCTCTAGGCTGGGCTGGACTGGACTCCCCCAAGCCACAGCTGGGTCTGAGTCTGCTCCATGGTTCTCCATCTTCCTCAGACTTGTGGGCCTACCAGGGTAGAGCCTTCTCATGCCAAAAGCAGAGAAGCACATCTCACTGCTGCTTGTCGTGGGTCTGCTTCCATTCCCTTGACTGAAGGAAGTCACATGGCCAAGACAAAAGCTAGGCAGTACAGTCCTCCAGGAGGGAGTAAATATTTCTGAATATGTTCTTATTTACCCCAAGTCCCTATGCAGATGCATTGGAATGGGAAGAGCCCCAGACTGAGAATCAGAAGTCCCTAGTTCTAGTCCCAGACCTGCCATGAATGACTTGTGTGGCCTTGGACAAATACTAGCCCCTTCTGGGCCTCATGTTTGTTCTAGAGATCTCTAAGGCATACGCAGGCTTTAACTTAAGAAGCTATGGCATGAAAAAACAAATAGTTGCCTCTCAAAATTCTAATCTCCTCTGAATGTAGCTTAGTCTTTATGCAAAAATAAACACACACACTAGAGTGTCTTCAAAACCACTGGGCTAATAATGTTCATGATTCTGTTAATGACCAAACTGGAGCACAGTGCAGCTGGTCCTGCTGGTCACAGGAAGGCCCCAGAAAGAAATGAAGCCATCAAGAAGCCATTGATGCTGTGACCTTCTGTTGCAGGCTGCTCCTCTACTTAGACAGGGAGAAGATGGCCATCTATGAACCAGGAAGCCCTCACTAGACCCCAAGTCTGCCAGCACCTCGAACTTGGATTCCTCAGTCTTCACAACAGTGTGAGCTGGCTCACCGCCATGCTGTCTCTGAGAAGACTCCATCTCTCGGAGAACAATCTGCCTTGTTCATGGCATGATGCATGAAGAAAAGCAGCCGGGCAGGAGAGGGACAGGAAAATCTCCCATCTTCCTGCATAGCTGAGGCTTTCCCTACTCCTAGGGAGAAGGCACTGAAGTGAATCCCATGAACATTCTCAACTGTTTCCAAAATGTTGCCAATATTCTTCTGTATATTGATATTTTGAAATCCCCAATGTAGTGGTATGTTGTATTTGAGCCCAGATTTAAAATTGTATATGTTTCATTCT</dnaseq>|
 
sequence = <dnaseq>CAAACTCCGGTGACCATAAGAATCACCTGGAGAGCTTGTTAAAGCACAGATTTGTGGTCCCCTCACCTGAGATTCTGATTCAGTGGGTCTGGAGGGGGGACTTTGCATTTCTAATAAGCTCCCAAGTGATGCTGCATAGGGCTGCCACAAATAGTAGGGGCTCAGTCAAGTTAGTATAATAGGATTTTTTTTCCTCTTATGTTGAAGTCCATAGGCAGGTAGTCCAGCCTAGTACCAAGGTTTCAGAACCTAGGCTTTTCCCCCTCTCCTTCCTGCCTTAAATGGCATTTGGTTTCCTACTCATGTTTCAGAATGTTTGCTTGAGCTACAGCCATCATGTCCACATTCAAACCAGTAAGAAAGAGGAAGGGGGAAAGGATGTCTTCTCTCTTTTTAAGGACATATCTCAGAAGTTGTATGTGACACTCTACTTACATCTTCTTAGCCAAAACTTCCTCACAAATCACACTAGCTGCAAAGAAATCTGGAAAATATAGTTTTTATTTGGGGTGTCATATGCCCAGCTAAAAATCAAGGTTTTATGATCAAGGCAGAAGAGAATGCACTTCTGACATTACTGATTTTTAATGTTACAGCAAACCTTTCCCAACTCTCCAGCCAGAGGTTTGCAATCTAAAACCTGCAATGGGCTAGGAAATTACAATAAAATTCTGAATTTCAAATTCTGATCACCCCTCTACAGGTAAGTATTATTTCTTTCATTTCTGTGTTCAAGAAATTGAGTCTCAGAGAGCTTCAGTGACTTTCCTGAGATCTCTCGGTAACTAAATGCCCCAACCAAGATTTAAACTCAACCCTGCCAAAGCCCAGGCTTCTAATGCGTCATTCTACATCACAGGAATCCCACATGTGTTTGCAGGATGAGCCTTGAATCAACCAACTACTGTTGCATACTATGCAACCACAAAACTCTGAGACCTAGACACTTATTTTACTACCATGTCTACAAGTCAACTGGAGACCAGCTGCTCTAGGCTGGGCTGGACTGGACTCCCCCAAGCCACAGCTGGGTCTGAGTCTGCTCCATGGTTCTCCATCTTCCTCAGACTTGTGGGCCTACCAGGGTAGAGCCTTCTCATGCCAAAAGCAGAGAAGCACATCTCACTGCTGCTTGTCGTGGGTCTGCTTCCATTCCCTTGACTGAAGGAAGTCACATGGCCAAGACAAAAGCTAGGCAGTACAGTCCTCCAGGAGGGAGTAAATATTTCTGAATATGTTCTTATTTACCCCAAGTCCCTATGCAGATGCATTGGAATGGGAAGAGCCCCAGACTGAGAATCAGAAGTCCCTAGTTCTAGTCCCAGACCTGCCATGAATGACTTGTGTGGCCTTGGACAAATACTAGCCCCTTCTGGGCCTCATGTTTGTTCTAGAGATCTCTAAGGCATACGCAGGCTTTAACTTAAGAAGCTATGGCATGAAAAAACAAATAGTTGCCTCTCAAAATTCTAATCTCCTCTGAATGTAGCTTAGTCTTTATGCAAAAATAAACACACACACTAGAGTGTCTTCAAAACCACTGGGCTAATAATGTTCATGATTCTGTTAATGACCAAACTGGAGCACAGTGCAGCTGGTCCTGCTGGTCACAGGAAGGCCCCAGAAAGAAATGAAGCCATCAAGAAGCCATTGATGCTGTGACCTTCTGTTGCAGGCTGCTCCTCTACTTAGACAGGGAGAAGATGGCCATCTATGAACCAGGAAGCCCTCACTAGACCCCAAGTCTGCCAGCACCTCGAACTTGGATTCCTCAGTCTTCACAACAGTGTGAGCTGGCTCACCGCCATGCTGTCTCTGAGAAGACTCCATCTCTCGGAGAACAATCTGCCTTGTTCATGGCATGATGCATGAAGAAAAGCAGCCGGGCAGGAGAGGGACAGGAAAATCTCCCATCTTCCTGCATAGCTGAGGCTTTCCCTACTCCTAGGGAGAAGGCACTGAAGTGAATCCCATGAACATTCTCAACTGTTTCCAAAATGTTGCCAATATTCTTCTGTATATTGATATTTTGAAATCCCCAATGTAGTGGTATGTTGTATTTGAGCCCAGATTTAAAATTGTATATGTTTCATTCT</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:ENSG00000251218.1]][[Category:lnc-KHDRBS3-3]]
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[[Category:Intergenic]][[Category:ENSG00000251218.1]][[Category:lnc-KHDRBS3-3]][[Category:Transcripts]]

Revision as of 11:48, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000505083.1

Source

Gencode19

Same with

lnc-KHDRBS3-3:1

Classification

intergenic

Length

2096 nt

Genomic location

chr8+:135862178..135894142

Exon number

3

Exons

135862178..135863873,135893427..135893523,135893840..135894142

Genome context

Sequence
000001 CAAACTCCGG TGACCATAAG AATCACCTGG AGAGCTTGTT AAAGCACAGA TTTGTGGTCC CCTCACCTGA GATTCTGATT 000080
000081 CAGTGGGTCT GGAGGGGGGA CTTTGCATTT CTAATAAGCT CCCAAGTGAT GCTGCATAGG GCTGCCACAA ATAGTAGGGG 000160
000161 CTCAGTCAAG TTAGTATAAT AGGATTTTTT TTCCTCTTAT GTTGAAGTCC ATAGGCAGGT AGTCCAGCCT AGTACCAAGG 000240
000241 TTTCAGAACC TAGGCTTTTC CCCCTCTCCT TCCTGCCTTA AATGGCATTT GGTTTCCTAC TCATGTTTCA GAATGTTTGC 000320
000321 TTGAGCTACA GCCATCATGT CCACATTCAA ACCAGTAAGA AAGAGGAAGG GGGAAAGGAT GTCTTCTCTC TTTTTAAGGA 000400
000401 CATATCTCAG AAGTTGTATG TGACACTCTA CTTACATCTT CTTAGCCAAA ACTTCCTCAC AAATCACACT AGCTGCAAAG 000480
000481 AAATCTGGAA AATATAGTTT TTATTTGGGG TGTCATATGC CCAGCTAAAA ATCAAGGTTT TATGATCAAG GCAGAAGAGA 000560
000561 ATGCACTTCT GACATTACTG ATTTTTAATG TTACAGCAAA CCTTTCCCAA CTCTCCAGCC AGAGGTTTGC AATCTAAAAC 000640
000641 CTGCAATGGG CTAGGAAATT ACAATAAAAT TCTGAATTTC AAATTCTGAT CACCCCTCTA CAGGTAAGTA TTATTTCTTT 000720
000721 CATTTCTGTG TTCAAGAAAT TGAGTCTCAG AGAGCTTCAG TGACTTTCCT GAGATCTCTC GGTAACTAAA TGCCCCAACC 000800
000801 AAGATTTAAA CTCAACCCTG CCAAAGCCCA GGCTTCTAAT GCGTCATTCT ACATCACAGG AATCCCACAT GTGTTTGCAG 000880
000881 GATGAGCCTT GAATCAACCA ACTACTGTTG CATACTATGC AACCACAAAA CTCTGAGACC TAGACACTTA TTTTACTACC 000960
000961 ATGTCTACAA GTCAACTGGA GACCAGCTGC TCTAGGCTGG GCTGGACTGG ACTCCCCCAA GCCACAGCTG GGTCTGAGTC 001040
001041 TGCTCCATGG TTCTCCATCT TCCTCAGACT TGTGGGCCTA CCAGGGTAGA GCCTTCTCAT GCCAAAAGCA GAGAAGCACA 001120
001121 TCTCACTGCT GCTTGTCGTG GGTCTGCTTC CATTCCCTTG ACTGAAGGAA GTCACATGGC CAAGACAAAA GCTAGGCAGT 001200
001201 ACAGTCCTCC AGGAGGGAGT AAATATTTCT GAATATGTTC TTATTTACCC CAAGTCCCTA TGCAGATGCA TTGGAATGGG 001280
001281 AAGAGCCCCA GACTGAGAAT CAGAAGTCCC TAGTTCTAGT CCCAGACCTG CCATGAATGA CTTGTGTGGC CTTGGACAAA 001360
001361 TACTAGCCCC TTCTGGGCCT CATGTTTGTT CTAGAGATCT CTAAGGCATA CGCAGGCTTT AACTTAAGAA GCTATGGCAT 001440
001441 GAAAAAACAA ATAGTTGCCT CTCAAAATTC TAATCTCCTC TGAATGTAGC TTAGTCTTTA TGCAAAAATA AACACACACA 001520
001521 CTAGAGTGTC TTCAAAACCA CTGGGCTAAT AATGTTCATG ATTCTGTTAA TGACCAAACT GGAGCACAGT GCAGCTGGTC 001600
001601 CTGCTGGTCA CAGGAAGGCC CCAGAAAGAA ATGAAGCCAT CAAGAAGCCA TTGATGCTGT GACCTTCTGT TGCAGGCTGC 001680
001681 TCCTCTACTT AGACAGGGAG AAGATGGCCA TCTATGAACC AGGAAGCCCT CACTAGACCC CAAGTCTGCC AGCACCTCGA 001760
001761 ACTTGGATTC CTCAGTCTTC ACAACAGTGT GAGCTGGCTC ACCGCCATGC TGTCTCTGAG AAGACTCCAT CTCTCGGAGA 001840
001841 ACAATCTGCC TTGTTCATGG CATGATGCAT GAAGAAAAGC AGCCGGGCAG GAGAGGGACA GGAAAATCTC CCATCTTCCT 001920
001921 GCATAGCTGA GGCTTTCCCT ACTCCTAGGG AGAAGGCACT GAAGTGAATC CCATGAACAT TCTCAACTGT TTCCAAAATG 002000
002001 TTGCCAATAT TCTTCTGTAT ATTGATATTT TGAAATCCCC AATGTAGTGG TATGTTGTAT TTGAGCCCAG ATTTAAAATT 002080
002081 GTATATGTTT CATTCT
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