Difference between revisions of "ENST00000505156.2"
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sequence = <dnaseq>GGCTGTGGCCAAGTGATTGTTGCTGAACTTACCTGTGTCGAAAGGTCAGCCTTCCAGTGCTAAGGCTGGGCACAGGCGCTAAGGCAAATTGGATTGTGAATGGAGGCCCTGAGGCATGTTCTGCACTTTGCAACTGGTCTGGCAGGCTCCACTCCTCCACCTTCTAAGTCTGCCACAGGCATGGGAAACACCTGGGCAGCGACAAAGGTGGTTAAGGCAGCTTCGCCAAGAAGAGGAGCCAAGATGGTTAACTAGACGTAGCCAGGAGGAACATCTCCCACCAAGAGACTGAGCTGTCAGGAAGACTGGTACATTCTGAGCAGATCTTTGGAGGGAAGGCATTGAGAGTGGATGGAAGGATGATGCAGACACTGGGCTGAAGAGGAAGGAAGCTGGGAACCCTGTACAGGACTACCGAGCACCAGGACTTGTTTCTGGCCCCCTGCAACTCCTGGGAAAGGGAGAACTCCTCCAGTGCTCTCAAGTGTTTTACAGACCACTAATTATTAAATGTGGAAGCTCTGGAGCAGAGAACCTTTCAACTGAAATGATGACAAACGATGCTGGCTGAGGAGAGTCAGACCTGAAAAGTTAGGAATCCCTAAAATGACGTCAACCTATAATTCCTATTACAGAGCTCTGATTTCTACTGATCGTTTTAGGAACCATATCTACTATGTGAGAAAAGCTGCTGGTGGGCCTAATTTAGATGAAAAGCAGAAAGGCCTTAAAAAAGAAATGGGAAAGGAATATACAGAAGCAAGAAGATGATTGAAAAAAGATGGCAATTCATGTACTTGTTGAACACCAGTTCTGAGCTGCAGAGCAGGAGGCACAAGACGTAAACAAAAAAGTCTCTGTTACGGTCCTAAAGAAGCCAATCATCTAGAGAAATGTATGCACAGCAGGTCCAGCAGAATGGGCTTTGCGCTGATGAGGGAAGCAAGAGGAGAGCATGGCCTGGGAAAGGAGATGATCAGGCTCACTTCCCATTTCTCTGTGGAAGAACCGTGGCAAACACAGAGTCAACTCACAACGTTCATTGGAATTTTTCCCACTTGACTCCTTCGCAAGTTGGAATAAGGAGTTTGGAAAGGGAGGATTTCTTCATATAAAAATGGTCTGGGTATATCCACGCAAAACTAAAGGGAGTGGAAGAGACCCTAGGTCTACACATTTGATGGGATAGATCCTTCGGGCTCAGCCTCACCTGCAGGTACTGAAGGAAGCCTTAGTCTGCTATACAGAGCACTCTGCACCATGGGGAGAAGATCAATATGCTAAACTTGGGTACTGGGCCTAAATCTTACGAAGTGACCTCAAACCTAGGAAGGGTAGTTTCATCAGAAAAGATCCTACAACCTTCTATCTGAAGAGCATGAATAGCTGCTGCTTTTTTGGAGTTGGGGCCTTTCATTCACCATGAAGATACTGCATTGTGGCACAGTCCTTGAAGAGACAAGTAGAGACAGGGTTTCACCGTGGTGACAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGTCTGCCTCAGCATCCCAAAGTGCTGGGATTACAGGCACATTGAAGAATCAGAAGATGTTTTCCCCCTGTGTTTTTGATGGAAGGAAGAAAGCAGGATTTGCCAGGATGCATTCTGCATCCAAGAACATGAACGGAAATGAGCCACAGAAAATCTGGAGTGATGGCAGCTGTTGTGAGAGGTGGCAATGAAATGGATTTCTCAGACACAGAGATGTGGTCTCCCACCAGGTCCCATTTCAGTGTATGGTTTCTTGGATTTCTCTGCCAGCTTCAAACAGTGCTTCTGATAAAGTGATTTATGAAGTAATGGGAAATGTATGTTGACTCATGGAGTAACAATGAGGAAATAGGCATTGGCACCAGGACTCTGTTGACATCAGGACTTCAGTGAGGGGGAAATTCTGCAGAGATGTGCATAAACTCATCGCAGCTGCTCTACCATCTGACAACCTGATGGTCATGGGGGACCTCAATGCACGTGTTGGTGGTAGTGCCAAAATGTGGAAGAAAATTATTGGACCACAGAGGATTAGTCTCTTCCTGCATGGTGAACAGACCGAGCAATAACTTGTAATCACAGACAACAGCGTCAATCATATAAGTTAGGAGAAAAATATCATGGATATGCCACAAATCAAAAACAGTGACATCACACCCATTCTGCCATTGTTTCACAGCAGAATGCCAACAAGCTGACAATCTGAATGGGTCTGAGATCGTTACCCAATATGCTTCAAATCAGGAGAACATACGGCAACACTCATTGACTTACATATTCTGGGTAAGACACAGAGCAAAGAACTGCAACAGAGGTTAAAGTTTCAGAAAGAGAAGAAGCAGCCTTCACTATATCAGACAGATGAATCCAGCTCCAATCAATAATTGAGTTTTGGATTGGAGGAAAGAATATTTGGACATTAAAGAAAATAAGCAGAGAGTGCCTAATCTCTTCAATTCTCAAGATCATGCTTAACATGACCACATTAATTACAGCAGAGTGAGACAGGCACAGAAGAGGAGGGACTTGGAACCTGACCTAAATACAGAAGTGTCAAGCCTAGAAGGAAGTAAAATTTGGAAGAAAGTACATGGCATATGAAAGAAAAATAACAACCCAACAACATCTGACATTATGGAATACTTAAATAAAAATAAAATTTTAGATTCA</dnaseq>| | sequence = <dnaseq>GGCTGTGGCCAAGTGATTGTTGCTGAACTTACCTGTGTCGAAAGGTCAGCCTTCCAGTGCTAAGGCTGGGCACAGGCGCTAAGGCAAATTGGATTGTGAATGGAGGCCCTGAGGCATGTTCTGCACTTTGCAACTGGTCTGGCAGGCTCCACTCCTCCACCTTCTAAGTCTGCCACAGGCATGGGAAACACCTGGGCAGCGACAAAGGTGGTTAAGGCAGCTTCGCCAAGAAGAGGAGCCAAGATGGTTAACTAGACGTAGCCAGGAGGAACATCTCCCACCAAGAGACTGAGCTGTCAGGAAGACTGGTACATTCTGAGCAGATCTTTGGAGGGAAGGCATTGAGAGTGGATGGAAGGATGATGCAGACACTGGGCTGAAGAGGAAGGAAGCTGGGAACCCTGTACAGGACTACCGAGCACCAGGACTTGTTTCTGGCCCCCTGCAACTCCTGGGAAAGGGAGAACTCCTCCAGTGCTCTCAAGTGTTTTACAGACCACTAATTATTAAATGTGGAAGCTCTGGAGCAGAGAACCTTTCAACTGAAATGATGACAAACGATGCTGGCTGAGGAGAGTCAGACCTGAAAAGTTAGGAATCCCTAAAATGACGTCAACCTATAATTCCTATTACAGAGCTCTGATTTCTACTGATCGTTTTAGGAACCATATCTACTATGTGAGAAAAGCTGCTGGTGGGCCTAATTTAGATGAAAAGCAGAAAGGCCTTAAAAAAGAAATGGGAAAGGAATATACAGAAGCAAGAAGATGATTGAAAAAAGATGGCAATTCATGTACTTGTTGAACACCAGTTCTGAGCTGCAGAGCAGGAGGCACAAGACGTAAACAAAAAAGTCTCTGTTACGGTCCTAAAGAAGCCAATCATCTAGAGAAATGTATGCACAGCAGGTCCAGCAGAATGGGCTTTGCGCTGATGAGGGAAGCAAGAGGAGAGCATGGCCTGGGAAAGGAGATGATCAGGCTCACTTCCCATTTCTCTGTGGAAGAACCGTGGCAAACACAGAGTCAACTCACAACGTTCATTGGAATTTTTCCCACTTGACTCCTTCGCAAGTTGGAATAAGGAGTTTGGAAAGGGAGGATTTCTTCATATAAAAATGGTCTGGGTATATCCACGCAAAACTAAAGGGAGTGGAAGAGACCCTAGGTCTACACATTTGATGGGATAGATCCTTCGGGCTCAGCCTCACCTGCAGGTACTGAAGGAAGCCTTAGTCTGCTATACAGAGCACTCTGCACCATGGGGAGAAGATCAATATGCTAAACTTGGGTACTGGGCCTAAATCTTACGAAGTGACCTCAAACCTAGGAAGGGTAGTTTCATCAGAAAAGATCCTACAACCTTCTATCTGAAGAGCATGAATAGCTGCTGCTTTTTTGGAGTTGGGGCCTTTCATTCACCATGAAGATACTGCATTGTGGCACAGTCCTTGAAGAGACAAGTAGAGACAGGGTTTCACCGTGGTGACAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGTCTGCCTCAGCATCCCAAAGTGCTGGGATTACAGGCACATTGAAGAATCAGAAGATGTTTTCCCCCTGTGTTTTTGATGGAAGGAAGAAAGCAGGATTTGCCAGGATGCATTCTGCATCCAAGAACATGAACGGAAATGAGCCACAGAAAATCTGGAGTGATGGCAGCTGTTGTGAGAGGTGGCAATGAAATGGATTTCTCAGACACAGAGATGTGGTCTCCCACCAGGTCCCATTTCAGTGTATGGTTTCTTGGATTTCTCTGCCAGCTTCAAACAGTGCTTCTGATAAAGTGATTTATGAAGTAATGGGAAATGTATGTTGACTCATGGAGTAACAATGAGGAAATAGGCATTGGCACCAGGACTCTGTTGACATCAGGACTTCAGTGAGGGGGAAATTCTGCAGAGATGTGCATAAACTCATCGCAGCTGCTCTACCATCTGACAACCTGATGGTCATGGGGGACCTCAATGCACGTGTTGGTGGTAGTGCCAAAATGTGGAAGAAAATTATTGGACCACAGAGGATTAGTCTCTTCCTGCATGGTGAACAGACCGAGCAATAACTTGTAATCACAGACAACAGCGTCAATCATATAAGTTAGGAGAAAAATATCATGGATATGCCACAAATCAAAAACAGTGACATCACACCCATTCTGCCATTGTTTCACAGCAGAATGCCAACAAGCTGACAATCTGAATGGGTCTGAGATCGTTACCCAATATGCTTCAAATCAGGAGAACATACGGCAACACTCATTGACTTACATATTCTGGGTAAGACACAGAGCAAAGAACTGCAACAGAGGTTAAAGTTTCAGAAAGAGAAGAAGCAGCCTTCACTATATCAGACAGATGAATCCAGCTCCAATCAATAATTGAGTTTTGGATTGGAGGAAAGAATATTTGGACATTAAAGAAAATAAGCAGAGAGTGCCTAATCTCTTCAATTCTCAAGATCATGCTTAACATGACCACATTAATTACAGCAGAGTGAGACAGGCACAGAAGAGGAGGGACTTGGAACCTGACCTAAATACAGAAGTGTCAAGCCTAGAAGGAAGTAAAATTTGGAAGAAAGTACATGGCATATGAAAGAAAAATAACAACCCAACAACATCTGACATTATGGAATACTTAAATAAAAATAAAATTTTAGATTCA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:ENSG00000249917.2]][[Category:lnc-TRPS1-1]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:ENSG00000249917.2]][[Category:lnc-TRPS1-1]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 16:36, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000505156.2 |
Source |
Gencode19 |
Same with |
lnc-TRPS1-1:1 |
Classification |
intergenic |
Length |
2692 nt |
Genomic location |
chr8-:116962736..117337297 |
Exon number |
14 |
Exons |
116962736..116962964,116963688..116963795,116967154..116967230,116976018..116976383,116981909..116982002,116988295..116988360,116989468..116989661,117131914..117132008,117137597..117137643,117142423..117142505,117271725..117272264,117272580..117272910,117285714..117285945,117337068..117337297 |
Genome context |
|
Sequence |
000001 GGCTGTGGCC AAGTGATTGT TGCTGAACTT ACCTGTGTCG AAAGGTCAGC CTTCCAGTGC TAAGGCTGGG CACAGGCGCT 000080
000081 AAGGCAAATT GGATTGTGAA TGGAGGCCCT GAGGCATGTT CTGCACTTTG CAACTGGTCT GGCAGGCTCC ACTCCTCCAC 000160 000161 CTTCTAAGTC TGCCACAGGC ATGGGAAACA CCTGGGCAGC GACAAAGGTG GTTAAGGCAG CTTCGCCAAG AAGAGGAGCC 000240 000241 AAGATGGTTA ACTAGACGTA GCCAGGAGGA ACATCTCCCA CCAAGAGACT GAGCTGTCAG GAAGACTGGT ACATTCTGAG 000320 000321 CAGATCTTTG GAGGGAAGGC ATTGAGAGTG GATGGAAGGA TGATGCAGAC ACTGGGCTGA AGAGGAAGGA AGCTGGGAAC 000400 000401 CCTGTACAGG ACTACCGAGC ACCAGGACTT GTTTCTGGCC CCCTGCAACT CCTGGGAAAG GGAGAACTCC TCCAGTGCTC 000480 000481 TCAAGTGTTT TACAGACCAC TAATTATTAA ATGTGGAAGC TCTGGAGCAG AGAACCTTTC AACTGAAATG ATGACAAACG 000560 000561 ATGCTGGCTG AGGAGAGTCA GACCTGAAAA GTTAGGAATC CCTAAAATGA CGTCAACCTA TAATTCCTAT TACAGAGCTC 000640 000641 TGATTTCTAC TGATCGTTTT AGGAACCATA TCTACTATGT GAGAAAAGCT GCTGGTGGGC CTAATTTAGA TGAAAAGCAG 000720 000721 AAAGGCCTTA AAAAAGAAAT GGGAAAGGAA TATACAGAAG CAAGAAGATG ATTGAAAAAA GATGGCAATT CATGTACTTG 000800 000801 TTGAACACCA GTTCTGAGCT GCAGAGCAGG AGGCACAAGA CGTAAACAAA AAAGTCTCTG TTACGGTCCT AAAGAAGCCA 000880 000881 ATCATCTAGA GAAATGTATG CACAGCAGGT CCAGCAGAAT GGGCTTTGCG CTGATGAGGG AAGCAAGAGG AGAGCATGGC 000960 000961 CTGGGAAAGG AGATGATCAG GCTCACTTCC CATTTCTCTG TGGAAGAACC GTGGCAAACA CAGAGTCAAC TCACAACGTT 001040 001041 CATTGGAATT TTTCCCACTT GACTCCTTCG CAAGTTGGAA TAAGGAGTTT GGAAAGGGAG GATTTCTTCA TATAAAAATG 001120 001121 GTCTGGGTAT ATCCACGCAA AACTAAAGGG AGTGGAAGAG ACCCTAGGTC TACACATTTG ATGGGATAGA TCCTTCGGGC 001200 001201 TCAGCCTCAC CTGCAGGTAC TGAAGGAAGC CTTAGTCTGC TATACAGAGC ACTCTGCACC ATGGGGAGAA GATCAATATG 001280 001281 CTAAACTTGG GTACTGGGCC TAAATCTTAC GAAGTGACCT CAAACCTAGG AAGGGTAGTT TCATCAGAAA AGATCCTACA 001360 001361 ACCTTCTATC TGAAGAGCAT GAATAGCTGC TGCTTTTTTG GAGTTGGGGC CTTTCATTCA CCATGAAGAT ACTGCATTGT 001440 001441 GGCACAGTCC TTGAAGAGAC AAGTAGAGAC AGGGTTTCAC CGTGGTGACA GGCTGGTCTC GAACTCCTGA CCTCAAGTGA 001520 001521 TCCGTCTGCC TCAGCATCCC AAAGTGCTGG GATTACAGGC ACATTGAAGA ATCAGAAGAT GTTTTCCCCC TGTGTTTTTG 001600 001601 ATGGAAGGAA GAAAGCAGGA TTTGCCAGGA TGCATTCTGC ATCCAAGAAC ATGAACGGAA ATGAGCCACA GAAAATCTGG 001680 001681 AGTGATGGCA GCTGTTGTGA GAGGTGGCAA TGAAATGGAT TTCTCAGACA CAGAGATGTG GTCTCCCACC AGGTCCCATT 001760 001761 TCAGTGTATG GTTTCTTGGA TTTCTCTGCC AGCTTCAAAC AGTGCTTCTG ATAAAGTGAT TTATGAAGTA ATGGGAAATG 001840 001841 TATGTTGACT CATGGAGTAA CAATGAGGAA ATAGGCATTG GCACCAGGAC TCTGTTGACA TCAGGACTTC AGTGAGGGGG 001920 001921 AAATTCTGCA GAGATGTGCA TAAACTCATC GCAGCTGCTC TACCATCTGA CAACCTGATG GTCATGGGGG ACCTCAATGC 002000 002001 ACGTGTTGGT GGTAGTGCCA AAATGTGGAA GAAAATTATT GGACCACAGA GGATTAGTCT CTTCCTGCAT GGTGAACAGA 002080 002081 CCGAGCAATA ACTTGTAATC ACAGACAACA GCGTCAATCA TATAAGTTAG GAGAAAAATA TCATGGATAT GCCACAAATC 002160 002161 AAAAACAGTG ACATCACACC CATTCTGCCA TTGTTTCACA GCAGAATGCC AACAAGCTGA CAATCTGAAT GGGTCTGAGA 002240 002241 TCGTTACCCA ATATGCTTCA AATCAGGAGA ACATACGGCA ACACTCATTG ACTTACATAT TCTGGGTAAG ACACAGAGCA 002320 002321 AAGAACTGCA ACAGAGGTTA AAGTTTCAGA AAGAGAAGAA GCAGCCTTCA CTATATCAGA CAGATGAATC CAGCTCCAAT 002400 002401 CAATAATTGA GTTTTGGATT GGAGGAAAGA ATATTTGGAC ATTAAAGAAA ATAAGCAGAG AGTGCCTAAT CTCTTCAATT 002480 002481 CTCAAGATCA TGCTTAACAT GACCACATTA ATTACAGCAG AGTGAGACAG GCACAGAAGA GGAGGGACTT GGAACCTGAC 002560 002561 CTAAATACAG AAGTGTCAAG CCTAGAAGGA AGTAAAATTT GGAAGAAAGT ACATGGCATA TGAAAGAAAA ATAACAACCC 002640 002641 AACAACATCT GACATTATGG AATACTTAAA TAAAAATAAA ATTTTAGATT CA |
Predicted Small Protein
Name | ENST00000505156.2_smProtein_893:1114 |
Length | 74 |
Molecular weight | 8319.0952 |
Aromaticity | 0.109589041096 |
Instability index | 46.1890410959 |
Isoelectric point | 6.38275146484 |
Runs | 13 |
Runs residual | 0.0339372514361 |
Runs probability | 0.0390186566657 |
Amino acid sequence | MYAQQVQQNGLCADEGSKRRAWPGKGDDQAHFPFLCGRTVANTESTHNVHWNFSHLTPSQ VGIRSLEREDFFI |
Secondary structure | LHHHHHLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLEEEELLEELLLLL EEEEEEEEELLLL |
PRMN | - |
PiMo | - |