Difference between revisions of "ENST00000508179.1"

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sequence = <dnaseq>CTCCTCCTCCTCCTCCTCCCCGCCGGGGTGAAACTCGAGCGCCCCACCCGCGCCTGACCTCCCCGAGCCCCTCCCCGGGCCCCGCCCCTTCCCGGTACAGGACCCCCACCTTCGCTCCTGGGAGCCCCGCTGCACCCCAGGAGTTCCATTCCAGCCTCCCCAGTGCGAGTGCGGCCGAGCGCTGACTTTTGGGGGCTCCCTCCCCCGTCTCACTGGGTCCCTCTGCGGCTCCCCCGCCCGCTGTCCCGGTTCAGACGTGGCTGCACCCCGGAGGGGGGCGCCGGCCGAGACCTGAGACGTGGCGCTCCCTCTCTGCCGGCCTCGGCTTCAGTGCTTGAATTTCAGCCACATCCCTAAGCTGCCATCTCAGACCAGAGGAACAGGGAGGGGGGCTTTCTGGAAAGAACATCACCTGGAAGAAATCAGGACATGACTGTGGGCCATGAGTGACCTTCAAAGGAAAGCCGGGTATCTGTGGTCTTTAAGATGTGATCCATGACATTTAAAAACTGAAGAAATGGAAAGATCATCTGATCAGGCCCATCAGTCTTTTTCCTAATGCTAAACATTGGTACAAAGACGTGAAGTTTGATGTCTCACTAAGATTGCCTAGGGCTGCTTTATTGCTCACCTACTTCAAAGTATTGGGAAAACATGATTATGGGTACAGGTGATGCTGTGTTGCCCCCAGACAGGTTTCTTTTGTCAGGTTCTTTTGATGGATTAGGAACCTACAAGTGGGGAGATTTTAGGGAAATAGCCCCTCCACTTGGATTTCACCAAAACGTCTTTAGGGTTCTCTTACCCCAAGAAACACGCATTCCTCTTTAGTGTGGCAGCCCACTCTATTGGCAAAGTTAAGCAGACCAGTTTTACTAAAAAGGAGCCACCCAGAAACTTAGACAGAAAATACTTGAGGCACAGATGAGAATGAGCACAAATGTGCATAGCAAGTGCAGTTTCCTGGCCCTTAAACTGAAGGGCCAGGTCAGTCTGCTCCTCCAGGCACAGCCTGGGACCCCATCATGTGCCCCACTCTGCAGTCTGAGCTTCCACTCAAGTCCACCAGGGCCTGCCTCACATATATATACAAGACCCAATGTCAGAGTCTGCCTCTGCCCATGTCTGGTCAGAGGGTTGCACTTTGCCACTGCTACATGTTCCCAGAGGTTGGCACAGCATGACCTGGACCTCACCTAACCCAGGCAAACTCTGCTCATCTTCGAGCTCTCTGGAACCCATTTCTCAAGGGAGAACCACATTCCCCCACCTCACAGCCAAGTTCAAGGAAGCAGCCTGGCTAAAGCAATGACTCAAGGATACCAGAAGCAGAGCACGCATTTAAGAAGATGCGCTGACTCGCAGGAGCAGCTGACTCTTCTTAAGAAGAGTTTACTGATTCTTCTTTCAGTACGGGCCTTTTAATAAGATATTGTATTTTACTTCAGCTATGGGTGCAGACAATTAAAGGATTCTAGAAATCTGAAAGTGTTTTGCCTTGTCCTCTTGGTTAAATTTCTGGATATATTGTCTAGCAACTCAATTTGCTTAAACAAAATTGTTGTGTCAAAAAAGCCCAAGTCATCTTTTATAAGTGTGGTCTGGGGAGAAGAAAAAAATGCTAAGTTTAAAAGATTTTTGGAATATCTGAAGAAAATACAGATAGCTTGTAATGGAGATGAAGCCTCTGGATGGTTTCCAGGGTGTTATTTTCCGACATTGAGTCTTGTATATATCTTGAATGTCTATAAGCAAAGAATGGCTATACTGTTTTTAAAAAGATATGTTTTATACTTATT</dnaseq>|
 
sequence = <dnaseq>CTCCTCCTCCTCCTCCTCCCCGCCGGGGTGAAACTCGAGCGCCCCACCCGCGCCTGACCTCCCCGAGCCCCTCCCCGGGCCCCGCCCCTTCCCGGTACAGGACCCCCACCTTCGCTCCTGGGAGCCCCGCTGCACCCCAGGAGTTCCATTCCAGCCTCCCCAGTGCGAGTGCGGCCGAGCGCTGACTTTTGGGGGCTCCCTCCCCCGTCTCACTGGGTCCCTCTGCGGCTCCCCCGCCCGCTGTCCCGGTTCAGACGTGGCTGCACCCCGGAGGGGGGCGCCGGCCGAGACCTGAGACGTGGCGCTCCCTCTCTGCCGGCCTCGGCTTCAGTGCTTGAATTTCAGCCACATCCCTAAGCTGCCATCTCAGACCAGAGGAACAGGGAGGGGGGCTTTCTGGAAAGAACATCACCTGGAAGAAATCAGGACATGACTGTGGGCCATGAGTGACCTTCAAAGGAAAGCCGGGTATCTGTGGTCTTTAAGATGTGATCCATGACATTTAAAAACTGAAGAAATGGAAAGATCATCTGATCAGGCCCATCAGTCTTTTTCCTAATGCTAAACATTGGTACAAAGACGTGAAGTTTGATGTCTCACTAAGATTGCCTAGGGCTGCTTTATTGCTCACCTACTTCAAAGTATTGGGAAAACATGATTATGGGTACAGGTGATGCTGTGTTGCCCCCAGACAGGTTTCTTTTGTCAGGTTCTTTTGATGGATTAGGAACCTACAAGTGGGGAGATTTTAGGGAAATAGCCCCTCCACTTGGATTTCACCAAAACGTCTTTAGGGTTCTCTTACCCCAAGAAACACGCATTCCTCTTTAGTGTGGCAGCCCACTCTATTGGCAAAGTTAAGCAGACCAGTTTTACTAAAAAGGAGCCACCCAGAAACTTAGACAGAAAATACTTGAGGCACAGATGAGAATGAGCACAAATGTGCATAGCAAGTGCAGTTTCCTGGCCCTTAAACTGAAGGGCCAGGTCAGTCTGCTCCTCCAGGCACAGCCTGGGACCCCATCATGTGCCCCACTCTGCAGTCTGAGCTTCCACTCAAGTCCACCAGGGCCTGCCTCACATATATATACAAGACCCAATGTCAGAGTCTGCCTCTGCCCATGTCTGGTCAGAGGGTTGCACTTTGCCACTGCTACATGTTCCCAGAGGTTGGCACAGCATGACCTGGACCTCACCTAACCCAGGCAAACTCTGCTCATCTTCGAGCTCTCTGGAACCCATTTCTCAAGGGAGAACCACATTCCCCCACCTCACAGCCAAGTTCAAGGAAGCAGCCTGGCTAAAGCAATGACTCAAGGATACCAGAAGCAGAGCACGCATTTAAGAAGATGCGCTGACTCGCAGGAGCAGCTGACTCTTCTTAAGAAGAGTTTACTGATTCTTCTTTCAGTACGGGCCTTTTAATAAGATATTGTATTTTACTTCAGCTATGGGTGCAGACAATTAAAGGATTCTAGAAATCTGAAAGTGTTTTGCCTTGTCCTCTTGGTTAAATTTCTGGATATATTGTCTAGCAACTCAATTTGCTTAAACAAAATTGTTGTGTCAAAAAAGCCCAAGTCATCTTTTATAAGTGTGGTCTGGGGAGAAGAAAAAAATGCTAAGTTTAAAAGATTTTTGGAATATCTGAAGAAAATACAGATAGCTTGTAATGGAGATGAAGCCTCTGGATGGTTTCCAGGGTGTTATTTTCCGACATTGAGTCTTGTATATATCTTGAATGTCTATAAGCAAAGAATGGCTATACTGTTTTTAAAAAGATATGTTTTATACTTATT</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-CCT5-4]][[Category:NONHSAG039839]]
+
[[Category:Intergenic]][[Category:lnc-CCT5-4]][[Category:NONHSAG039839]][[Category:ENSG00000250786.1]]

Revision as of 18:44, 15 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000508179.1

Source

Gencode19

Same with

lnc-CCT5-4:1,NONHSAT100367

Classification

intergenic

Length

1799 nt

Genomic location

chr5+:9546312..9550721

Exon number

3

Exons

9546312..9546642,9549102..9549261,9549414..9550721

Genome context

Sequence
000001 CTCCTCCTCC TCCTCCTCCC CGCCGGGGTG AAACTCGAGC GCCCCACCCG CGCCTGACCT CCCCGAGCCC CTCCCCGGGC 000080
000081 CCCGCCCCTT CCCGGTACAG GACCCCCACC TTCGCTCCTG GGAGCCCCGC TGCACCCCAG GAGTTCCATT CCAGCCTCCC 000160
000161 CAGTGCGAGT GCGGCCGAGC GCTGACTTTT GGGGGCTCCC TCCCCCGTCT CACTGGGTCC CTCTGCGGCT CCCCCGCCCG 000240
000241 CTGTCCCGGT TCAGACGTGG CTGCACCCCG GAGGGGGGCG CCGGCCGAGA CCTGAGACGT GGCGCTCCCT CTCTGCCGGC 000320
000321 CTCGGCTTCA GTGCTTGAAT TTCAGCCACA TCCCTAAGCT GCCATCTCAG ACCAGAGGAA CAGGGAGGGG GGCTTTCTGG 000400
000401 AAAGAACATC ACCTGGAAGA AATCAGGACA TGACTGTGGG CCATGAGTGA CCTTCAAAGG AAAGCCGGGT ATCTGTGGTC 000480
000481 TTTAAGATGT GATCCATGAC ATTTAAAAAC TGAAGAAATG GAAAGATCAT CTGATCAGGC CCATCAGTCT TTTTCCTAAT 000560
000561 GCTAAACATT GGTACAAAGA CGTGAAGTTT GATGTCTCAC TAAGATTGCC TAGGGCTGCT TTATTGCTCA CCTACTTCAA 000640
000641 AGTATTGGGA AAACATGATT ATGGGTACAG GTGATGCTGT GTTGCCCCCA GACAGGTTTC TTTTGTCAGG TTCTTTTGAT 000720
000721 GGATTAGGAA CCTACAAGTG GGGAGATTTT AGGGAAATAG CCCCTCCACT TGGATTTCAC CAAAACGTCT TTAGGGTTCT 000800
000801 CTTACCCCAA GAAACACGCA TTCCTCTTTA GTGTGGCAGC CCACTCTATT GGCAAAGTTA AGCAGACCAG TTTTACTAAA 000880
000881 AAGGAGCCAC CCAGAAACTT AGACAGAAAA TACTTGAGGC ACAGATGAGA ATGAGCACAA ATGTGCATAG CAAGTGCAGT 000960
000961 TTCCTGGCCC TTAAACTGAA GGGCCAGGTC AGTCTGCTCC TCCAGGCACA GCCTGGGACC CCATCATGTG CCCCACTCTG 001040
001041 CAGTCTGAGC TTCCACTCAA GTCCACCAGG GCCTGCCTCA CATATATATA CAAGACCCAA TGTCAGAGTC TGCCTCTGCC 001120
001121 CATGTCTGGT CAGAGGGTTG CACTTTGCCA CTGCTACATG TTCCCAGAGG TTGGCACAGC ATGACCTGGA CCTCACCTAA 001200
001201 CCCAGGCAAA CTCTGCTCAT CTTCGAGCTC TCTGGAACCC ATTTCTCAAG GGAGAACCAC ATTCCCCCAC CTCACAGCCA 001280
001281 AGTTCAAGGA AGCAGCCTGG CTAAAGCAAT GACTCAAGGA TACCAGAAGC AGAGCACGCA TTTAAGAAGA TGCGCTGACT 001360
001361 CGCAGGAGCA GCTGACTCTT CTTAAGAAGA GTTTACTGAT TCTTCTTTCA GTACGGGCCT TTTAATAAGA TATTGTATTT 001440
001441 TACTTCAGCT ATGGGTGCAG ACAATTAAAG GATTCTAGAA ATCTGAAAGT GTTTTGCCTT GTCCTCTTGG TTAAATTTCT 001520
001521 GGATATATTG TCTAGCAACT CAATTTGCTT AAACAAAATT GTTGTGTCAA AAAAGCCCAA GTCATCTTTT ATAAGTGTGG 001600
001601 TCTGGGGAGA AGAAAAAAAT GCTAAGTTTA AAAGATTTTT GGAATATCTG AAGAAAATAC AGATAGCTTG TAATGGAGAT 001680
001681 GAAGCCTCTG GATGGTTTCC AGGGTGTTAT TTTCCGACAT TGAGTCTTGT ATATATCTTG AATGTCTATA AGCAAAGAAT 001760
001761 GGCTATACTG TTTTTAAAAA GATATGTTTT ATACTTATT
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