Difference between revisions of "ENST00000521341.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AACAGGAAGTTGAGACTGCCACCTGAACACTTTGGGCTCCTCATGCCTCTGAATCAACGGGCAAAGAAGAGAGTTATAGATCCTAACCACCCAGGAGAAATTCGGTGGCCACTACACAAACAGACTTTTCTGACTCTGCGGCCAGGTGTTTGTATTTAACTCCACGGTGAGGAGACTCATCTTCTGACGGACCTAACCTATACCATCAAGGTCAGAGGCAACAAGAAATGGCATGCATTTCAGTTTATTGTTCTGTGGCTCCAGCTTGTATATTTTAACTCTAGATTTTTTTTTACTTTCCCCACTTTACAATCATCTTCCCTTTCCAACTACCTTCCTTGTGGACTTCAAGCTCCAGCACCACAAGCAAAGACAAAAACCTTGCGGAAACTATTTAACTAACTCCCACAATTGCATAAGAAGAGTCATGATCCTAAGAACAGAAGGGAGATCCCTGTTGCTTTGACTTCTTGCTGTCCTCCTGCTATTTGGCTCAAAATGCAAACTCAGTTATGAGAAGTACATAGAAGAACAGGTAAACTAAAGCCTGGGCTTTTTCACCAGAGGATGTGGAAAAGAGGCTTCAGGAAATTGAGAAGTATTATGGAGATTGCAAAAATGAGGGAGCTGAAGAAAGAGTTAGAATGACAGTGAATGTGAGAAGAGAGAGAGATGAATACCACGAAGTTGCGTATGTACTGCTGGACTATACCCTGAACTGAGCATGTAAACATCTGACCACAGATGGTATAATAAGGCTTTGAAAACTAAGCTACAATAAAGACCATCACCCAGGCCAAAAATTGCTACTTGGAAATGCACACACAGACTGATCCAAATAGCATTGAAAACACTTAAAGAAATGGTGCAGACATTGGAGTCACAATCCAAAGAAGGCAGATCAGAGTTTGTTCCATAAGCCTGAATAGGTTGATTGCTTAATATAAGAAGAAAATCAACCTTTTTCTTATGATTTAAGACATAATCAGAGTCTCATAACATATTCTCAAAATGCCCAGGATATAATTTAAAATTATTTGGCATATGAGAAACCAGTGTGATCGTCTCTTAACTCTTAAAGAAAAAGACAATTAAAAATATCACAATCAAAATGACAGGAATGTTGTATTTATCAGATAAAGACATTAAAGAGATATTATAACCATGCTCTAACAGGCAAATGAAAAGACTCATAATGAATAGAAAAATAGAAGGTCTCAGCAAAGAGAAAGAATATATGAAGATGAAAAATGGAAATTTTAGAACTGGACAATGTGACAGTCCAAAGAGAAAATTCACTGGATGGACTAAATAGGATAATGGAGATAACAGAGGAAAAGAGGCAGATGACTTGAATACCGATCATGAGAAATTAACTATTTCAAAGAAGAGAGTAAAAAGAGACTTAAAAATAAAATGAACAGAGCCTCTGAGTCCTGTGAAACAATGTCAAAAAGCCTAATATTGGTGTCATCTGAACCACAGAAGGAGGAAGAAAGTATGAGAAAAAATATCTAAAGAAAAATAGCCAGAAACTTCCTTAATTTGGCGAAAGATAAAATCTTAAAGATGCCTGAGGAGGCTCAGGAAACTCTAAGGAGAAGAAGCTACAAAAAATCTACACTCTAAAACTTCTGAAATTAAAAAACAAAGAAAAAATTTTTGAATGCACCCAGAAACTCAATACAAATGGAGAATTCTGATTTGAATACTGTATATTTTATATAAGGAAACATGGTAGTTAAGGGGAAGTGGAACAACATTTTTTAAGTGATGCAAAAAATGATTCTATATTCAGAAATCTTTATCCAGTAAAAATATTCTTGATAAATGAAAATCAAATAAAGATATTCCTGATGAAACT</dnaseq>| | sequence = <dnaseq>AACAGGAAGTTGAGACTGCCACCTGAACACTTTGGGCTCCTCATGCCTCTGAATCAACGGGCAAAGAAGAGAGTTATAGATCCTAACCACCCAGGAGAAATTCGGTGGCCACTACACAAACAGACTTTTCTGACTCTGCGGCCAGGTGTTTGTATTTAACTCCACGGTGAGGAGACTCATCTTCTGACGGACCTAACCTATACCATCAAGGTCAGAGGCAACAAGAAATGGCATGCATTTCAGTTTATTGTTCTGTGGCTCCAGCTTGTATATTTTAACTCTAGATTTTTTTTTACTTTCCCCACTTTACAATCATCTTCCCTTTCCAACTACCTTCCTTGTGGACTTCAAGCTCCAGCACCACAAGCAAAGACAAAAACCTTGCGGAAACTATTTAACTAACTCCCACAATTGCATAAGAAGAGTCATGATCCTAAGAACAGAAGGGAGATCCCTGTTGCTTTGACTTCTTGCTGTCCTCCTGCTATTTGGCTCAAAATGCAAACTCAGTTATGAGAAGTACATAGAAGAACAGGTAAACTAAAGCCTGGGCTTTTTCACCAGAGGATGTGGAAAAGAGGCTTCAGGAAATTGAGAAGTATTATGGAGATTGCAAAAATGAGGGAGCTGAAGAAAGAGTTAGAATGACAGTGAATGTGAGAAGAGAGAGAGATGAATACCACGAAGTTGCGTATGTACTGCTGGACTATACCCTGAACTGAGCATGTAAACATCTGACCACAGATGGTATAATAAGGCTTTGAAAACTAAGCTACAATAAAGACCATCACCCAGGCCAAAAATTGCTACTTGGAAATGCACACACAGACTGATCCAAATAGCATTGAAAACACTTAAAGAAATGGTGCAGACATTGGAGTCACAATCCAAAGAAGGCAGATCAGAGTTTGTTCCATAAGCCTGAATAGGTTGATTGCTTAATATAAGAAGAAAATCAACCTTTTTCTTATGATTTAAGACATAATCAGAGTCTCATAACATATTCTCAAAATGCCCAGGATATAATTTAAAATTATTTGGCATATGAGAAACCAGTGTGATCGTCTCTTAACTCTTAAAGAAAAAGACAATTAAAAATATCACAATCAAAATGACAGGAATGTTGTATTTATCAGATAAAGACATTAAAGAGATATTATAACCATGCTCTAACAGGCAAATGAAAAGACTCATAATGAATAGAAAAATAGAAGGTCTCAGCAAAGAGAAAGAATATATGAAGATGAAAAATGGAAATTTTAGAACTGGACAATGTGACAGTCCAAAGAGAAAATTCACTGGATGGACTAAATAGGATAATGGAGATAACAGAGGAAAAGAGGCAGATGACTTGAATACCGATCATGAGAAATTAACTATTTCAAAGAAGAGAGTAAAAAGAGACTTAAAAATAAAATGAACAGAGCCTCTGAGTCCTGTGAAACAATGTCAAAAAGCCTAATATTGGTGTCATCTGAACCACAGAAGGAGGAAGAAAGTATGAGAAAAAATATCTAAAGAAAAATAGCCAGAAACTTCCTTAATTTGGCGAAAGATAAAATCTTAAAGATGCCTGAGGAGGCTCAGGAAACTCTAAGGAGAAGAAGCTACAAAAAATCTACACTCTAAAACTTCTGAAATTAAAAAACAAAGAAAAAATTTTTGAATGCACCCAGAAACTCAATACAAATGGAGAATTCTGATTTGAATACTGTATATTTTATATAAGGAAACATGGTAGTTAAGGGGAAGTGGAACAACATTTTTTAAGTGATGCAAAAAATGATTCTATATTCAGAAATCTTTATCCAGTAAAAATATTCTTGATAAATGAAAATCAAATAAAGATATTCCTGATGAAACT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-NUDCD2-6]] |
Revision as of 15:04, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000521341.1 |
| Source |
Gencode19 |
| Same with |
lnc-NUDCD2-6:4,NONHSAT104946 |
| Classification |
intergenic |
| Length |
1864 nt |
| Genomic location |
chr5-:164647583..164668758 |
| Exon number |
3 |
| Exons |
164647583..164649026,164667468..164667763,164668635..164668758 |
| Genome context |
|
| Sequence |
000001 AACAGGAAGT TGAGACTGCC ACCTGAACAC TTTGGGCTCC TCATGCCTCT GAATCAACGG GCAAAGAAGA GAGTTATAGA 000080
000081 TCCTAACCAC CCAGGAGAAA TTCGGTGGCC ACTACACAAA CAGACTTTTC TGACTCTGCG GCCAGGTGTT TGTATTTAAC 000160 000161 TCCACGGTGA GGAGACTCAT CTTCTGACGG ACCTAACCTA TACCATCAAG GTCAGAGGCA ACAAGAAATG GCATGCATTT 000240 000241 CAGTTTATTG TTCTGTGGCT CCAGCTTGTA TATTTTAACT CTAGATTTTT TTTTACTTTC CCCACTTTAC AATCATCTTC 000320 000321 CCTTTCCAAC TACCTTCCTT GTGGACTTCA AGCTCCAGCA CCACAAGCAA AGACAAAAAC CTTGCGGAAA CTATTTAACT 000400 000401 AACTCCCACA ATTGCATAAG AAGAGTCATG ATCCTAAGAA CAGAAGGGAG ATCCCTGTTG CTTTGACTTC TTGCTGTCCT 000480 000481 CCTGCTATTT GGCTCAAAAT GCAAACTCAG TTATGAGAAG TACATAGAAG AACAGGTAAA CTAAAGCCTG GGCTTTTTCA 000560 000561 CCAGAGGATG TGGAAAAGAG GCTTCAGGAA ATTGAGAAGT ATTATGGAGA TTGCAAAAAT GAGGGAGCTG AAGAAAGAGT 000640 000641 TAGAATGACA GTGAATGTGA GAAGAGAGAG AGATGAATAC CACGAAGTTG CGTATGTACT GCTGGACTAT ACCCTGAACT 000720 000721 GAGCATGTAA ACATCTGACC ACAGATGGTA TAATAAGGCT TTGAAAACTA AGCTACAATA AAGACCATCA CCCAGGCCAA 000800 000801 AAATTGCTAC TTGGAAATGC ACACACAGAC TGATCCAAAT AGCATTGAAA ACACTTAAAG AAATGGTGCA GACATTGGAG 000880 000881 TCACAATCCA AAGAAGGCAG ATCAGAGTTT GTTCCATAAG CCTGAATAGG TTGATTGCTT AATATAAGAA GAAAATCAAC 000960 000961 CTTTTTCTTA TGATTTAAGA CATAATCAGA GTCTCATAAC ATATTCTCAA AATGCCCAGG ATATAATTTA AAATTATTTG 001040 001041 GCATATGAGA AACCAGTGTG ATCGTCTCTT AACTCTTAAA GAAAAAGACA ATTAAAAATA TCACAATCAA AATGACAGGA 001120 001121 ATGTTGTATT TATCAGATAA AGACATTAAA GAGATATTAT AACCATGCTC TAACAGGCAA ATGAAAAGAC TCATAATGAA 001200 001201 TAGAAAAATA GAAGGTCTCA GCAAAGAGAA AGAATATATG AAGATGAAAA ATGGAAATTT TAGAACTGGA CAATGTGACA 001280 001281 GTCCAAAGAG AAAATTCACT GGATGGACTA AATAGGATAA TGGAGATAAC AGAGGAAAAG AGGCAGATGA CTTGAATACC 001360 001361 GATCATGAGA AATTAACTAT TTCAAAGAAG AGAGTAAAAA GAGACTTAAA AATAAAATGA ACAGAGCCTC TGAGTCCTGT 001440 001441 GAAACAATGT CAAAAAGCCT AATATTGGTG TCATCTGAAC CACAGAAGGA GGAAGAAAGT ATGAGAAAAA ATATCTAAAG 001520 001521 AAAAATAGCC AGAAACTTCC TTAATTTGGC GAAAGATAAA ATCTTAAAGA TGCCTGAGGA GGCTCAGGAA ACTCTAAGGA 001600 001601 GAAGAAGCTA CAAAAAATCT ACACTCTAAA ACTTCTGAAA TTAAAAAACA AAGAAAAAAT TTTTGAATGC ACCCAGAAAC 001680 001681 TCAATACAAA TGGAGAATTC TGATTTGAAT ACTGTATATT TTATATAAGG AAACATGGTA GTTAAGGGGA AGTGGAACAA 001760 001761 CATTTTTTAA GTGATGCAAA AAATGATTCT ATATTCAGAA ATCTTTATCC AGTAAAAATA TTCTTGATAA ATGAAAATCA 001840 001841 AATAAAGATA TTCCTGATGA AACT |
Predicted Small Protein
| Name | ENST00000521341.1_smProtein_1250:1354 |
| Length | 35 |
| Molecular weight | 4049.5632 |
| Aromaticity | 0.0 |
| Instability index | 53.8617647059 |
| Isoelectric point | 4.38104248047 |
| Runs | 7 |
| Runs residual | 0.0197319434103 |
| Runs probability | 0.0233931410402 |
| Amino acid sequence | MEILELDNVTVQRENSLDGLNRIMEITEEKRQMT |
| Secondary structure | LEEEELLLLEEELLLLLLHHHHHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
