Difference between revisions of "ENST00000531654.1"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>ACAATGCGTTCTCCTTTCTTCCTCTCCACTAATCTGTACTTCTAAGAGGTGTTGAGTTTCGGCCAAACTTTCTGCTCGGCTCGCATCAAAGGCTGCCCTCTTGTGAATAGCCAGCTCTCACCTAATGATCTCCCTACTCACTCCTGACCAGGACGCAGGTCATTCCCCATAATAATTAGCTCACAGGCAGAGTTTCCAGGCGCTTCCAGGAGCATCAATCACCGGGATGAATGGGAAGCCCGTGTGTGGGAACTGCAGGGGGAGCTGGGTGCAGAGCCACCTCAGCCCTGTCACCCTGCGCGTGTCTCTGCCATGCTTCCTTGGATCCCTATCTACCCCGTTTTGGGTGACAGGACGAGTTGGGCCAGTTACCAGGATCTTGTCGCCTGGTTCTGATGGTGTCTTGGTTCCCGGCTGGGGTTTTGTGTTTACCACGAGCGTTGCCTGCTGTCGGGGAGCTGCGTGTGTTTCACAACAAACAGGGAGCCAGGGAGACCACCCTGCGGGGCTGCCCCTTCCCTCAGCGCTTTCTGCTTGGGTCGCTGGCGTCTTGCAGTGCCTTCGTTCGTCTGTGGTGTGAGGTGCTGGTCCAGGCTTACGCGCTAACAGTGAATTAGAAGGAGAAAACGCTCTGCGAGTGCAGCGGAAGGAGGAAGTCCAGAGCCACGGAAATTCGGTAAGGATCGGATAAGGGCAATAAAATCGCAGCTCTAAATCTTTTCATGGAGTTGAAGACAGACGTTTGACTGTGGGAGCCATCTCATCTTTATAACCTGCCTGAGTCGAAGCTGTTAAAGAGGCCAAGAATTCCCAAGCTTTCCCAGGCAAACGGGGAAGAACACTGGGATGCCTTTTCCTCCTCCTCTGTCCATCTGCAGGCCAAGTGTGCATCAGTCACAGGCAAACTCTGAATTGAGCTTTGTGCAAGTCTCTGGAAAGAGACCCAAGATCGTGTGATGAGCAAAAGTGACAGTGCTGGAGGCAGCGACATCTGCAGAGCCAGCCCCATCCCTATCTGCAGCAGAATATGTATGGGGATCCTTTATGTGAACAATCCACCCAGGGTAGAATGGGGCTTTTGACATCAGCTGAGACCCAGGCGGCCTTACAATGAGAGGGCTGTTGGTCAAAGGAAGGACTGTTTAATGAACTGAGAATCTGAGGCCAGCTCTGGCCATCTGCACTTGGAATCATTAGAGCAACTCTACTGTAACTGGCAACCTTGAATAATGCAGCAAATTCATATTCCAAAATTGTGAACTTTAAAATTTTGTGTTTGTGTCTATGATGAAAAGCATTATATAAACATTTGATACTACAATTTTATTAGTAAGGAAGGCTGAAAAA</dnaseq>|
 
sequence = <dnaseq>ACAATGCGTTCTCCTTTCTTCCTCTCCACTAATCTGTACTTCTAAGAGGTGTTGAGTTTCGGCCAAACTTTCTGCTCGGCTCGCATCAAAGGCTGCCCTCTTGTGAATAGCCAGCTCTCACCTAATGATCTCCCTACTCACTCCTGACCAGGACGCAGGTCATTCCCCATAATAATTAGCTCACAGGCAGAGTTTCCAGGCGCTTCCAGGAGCATCAATCACCGGGATGAATGGGAAGCCCGTGTGTGGGAACTGCAGGGGGAGCTGGGTGCAGAGCCACCTCAGCCCTGTCACCCTGCGCGTGTCTCTGCCATGCTTCCTTGGATCCCTATCTACCCCGTTTTGGGTGACAGGACGAGTTGGGCCAGTTACCAGGATCTTGTCGCCTGGTTCTGATGGTGTCTTGGTTCCCGGCTGGGGTTTTGTGTTTACCACGAGCGTTGCCTGCTGTCGGGGAGCTGCGTGTGTTTCACAACAAACAGGGAGCCAGGGAGACCACCCTGCGGGGCTGCCCCTTCCCTCAGCGCTTTCTGCTTGGGTCGCTGGCGTCTTGCAGTGCCTTCGTTCGTCTGTGGTGTGAGGTGCTGGTCCAGGCTTACGCGCTAACAGTGAATTAGAAGGAGAAAACGCTCTGCGAGTGCAGCGGAAGGAGGAAGTCCAGAGCCACGGAAATTCGGTAAGGATCGGATAAGGGCAATAAAATCGCAGCTCTAAATCTTTTCATGGAGTTGAAGACAGACGTTTGACTGTGGGAGCCATCTCATCTTTATAACCTGCCTGAGTCGAAGCTGTTAAAGAGGCCAAGAATTCCCAAGCTTTCCCAGGCAAACGGGGAAGAACACTGGGATGCCTTTTCCTCCTCCTCTGTCCATCTGCAGGCCAAGTGTGCATCAGTCACAGGCAAACTCTGAATTGAGCTTTGTGCAAGTCTCTGGAAAGAGACCCAAGATCGTGTGATGAGCAAAAGTGACAGTGCTGGAGGCAGCGACATCTGCAGAGCCAGCCCCATCCCTATCTGCAGCAGAATATGTATGGGGATCCTTTATGTGAACAATCCACCCAGGGTAGAATGGGGCTTTTGACATCAGCTGAGACCCAGGCGGCCTTACAATGAGAGGGCTGTTGGTCAAAGGAAGGACTGTTTAATGAACTGAGAATCTGAGGCCAGCTCTGGCCATCTGCACTTGGAATCATTAGAGCAACTCTACTGTAACTGGCAACCTTGAATAATGCAGCAAATTCATATTCCAAAATTGTGAACTTTAAAATTTTGTGTTTGTGTCTATGATGAAAAGCATTATATAAACATTTGATACTACAATTTTATTAGTAAGGAAGGCTGAAAAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:lnc-CA8-3]]

Revision as of 09:22, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000531654.1

Source

Gencode19

Same with

lnc-CA8-3:5,NONHSAT126823

Classification

intergenic

Length

1347 nt

Genomic location

chr8-:61317238..61326489

Exon number

4

Exons

61317238..61317808,61325053..61325179,61325756..61326029,61326115..61326489

Genome context

Sequence
000001 ACAATGCGTT CTCCTTTCTT CCTCTCCACT AATCTGTACT TCTAAGAGGT GTTGAGTTTC GGCCAAACTT TCTGCTCGGC 000080
000081 TCGCATCAAA GGCTGCCCTC TTGTGAATAG CCAGCTCTCA CCTAATGATC TCCCTACTCA CTCCTGACCA GGACGCAGGT 000160
000161 CATTCCCCAT AATAATTAGC TCACAGGCAG AGTTTCCAGG CGCTTCCAGG AGCATCAATC ACCGGGATGA ATGGGAAGCC 000240
000241 CGTGTGTGGG AACTGCAGGG GGAGCTGGGT GCAGAGCCAC CTCAGCCCTG TCACCCTGCG CGTGTCTCTG CCATGCTTCC 000320
000321 TTGGATCCCT ATCTACCCCG TTTTGGGTGA CAGGACGAGT TGGGCCAGTT ACCAGGATCT TGTCGCCTGG TTCTGATGGT 000400
000401 GTCTTGGTTC CCGGCTGGGG TTTTGTGTTT ACCACGAGCG TTGCCTGCTG TCGGGGAGCT GCGTGTGTTT CACAACAAAC 000480
000481 AGGGAGCCAG GGAGACCACC CTGCGGGGCT GCCCCTTCCC TCAGCGCTTT CTGCTTGGGT CGCTGGCGTC TTGCAGTGCC 000560
000561 TTCGTTCGTC TGTGGTGTGA GGTGCTGGTC CAGGCTTACG CGCTAACAGT GAATTAGAAG GAGAAAACGC TCTGCGAGTG 000640
000641 CAGCGGAAGG AGGAAGTCCA GAGCCACGGA AATTCGGTAA GGATCGGATA AGGGCAATAA AATCGCAGCT CTAAATCTTT 000720
000721 TCATGGAGTT GAAGACAGAC GTTTGACTGT GGGAGCCATC TCATCTTTAT AACCTGCCTG AGTCGAAGCT GTTAAAGAGG 000800
000801 CCAAGAATTC CCAAGCTTTC CCAGGCAAAC GGGGAAGAAC ACTGGGATGC CTTTTCCTCC TCCTCTGTCC ATCTGCAGGC 000880
000881 CAAGTGTGCA TCAGTCACAG GCAAACTCTG AATTGAGCTT TGTGCAAGTC TCTGGAAAGA GACCCAAGAT CGTGTGATGA 000960
000961 GCAAAAGTGA CAGTGCTGGA GGCAGCGACA TCTGCAGAGC CAGCCCCATC CCTATCTGCA GCAGAATATG TATGGGGATC 001040
001041 CTTTATGTGA ACAATCCACC CAGGGTAGAA TGGGGCTTTT GACATCAGCT GAGACCCAGG CGGCCTTACA ATGAGAGGGC 001120
001121 TGTTGGTCAA AGGAAGGACT GTTTAATGAA CTGAGAATCT GAGGCCAGCT CTGGCCATCT GCACTTGGAA TCATTAGAGC 001200
001201 AACTCTACTG TAACTGGCAA CCTTGAATAA TGCAGCAAAT TCATATTCCA AAATTGTGAA CTTTAAAATT TTGTGTTTGT 001280
001281 GTCTATGATG AAAAGCATTA TATAAACATT TGATACTACA ATTTTATTAG TAAGGAAGGC TGAAAAA
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Predicted Small Protein

Name ENST00000531654.1_smProtein_395:616
Length 74
Molecular weight 8064.4637
Aromaticity 0.109589041096
Instability index 56.6479452055
Isoelectric point 9.29864501953
Runs 9
Runs residual 0.0208572691118
Runs probability 0.028508901058
Amino acid sequence MVSWFPAGVLCLPRALPAVGELRVFHNKQGARETTLRGCPFPQRFLLGSLASCSAFVRLW
CEVLVQAYALTVN
Secondary structure LEEELLLLLLLLLLLLLLLLEEEEEELLLLLEEEELLLLLLHHHHHHHHHHHHHHHHHHH
HHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHH
HHHHHLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTT
TTTTToooooooo