Difference between revisions of "ENST00000539784.1"

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sequence = <dnaseq>GTCTGAAGCTCTGGGAACGGGGGCAGAAAGCTGTATTTCGAAAAGCTTCCCACATGATTTTGATGCAAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCAATTTCTAGCACTTCCTGGAGATCAGGTCCCTGAAGAGCTATAAAAATCCAGCGGTGTTTCTGGCCACCTTTCCATGTGGTTTGTAGTGCACTGTCAGTCACACACGCCTGCAGAGCATGTGTGTGTTTGTGTTTGCACACGTGTGTGCATGTGTGTGAGTGGGTGCATGCATGCATGTGTATTTGGCTTTAAGGGAGGCTCTCATATTGCATTACCTATGTTGCTAGTTTCTGGCTGCCAGTTTGCATTTCTTAGGCGGATTTTCTGATTCCAGGCTCGGGAGGGCTCCCCTGCACTGTATGTAATTGGGCACGAAGCCCGTGGTGGGGTGGATTTGGGTAATGGCAGGGCTGCATTCCTCCCATTCTTTTCTCACAGGAAAAAGTGCCTGGATATAACCCTGTGGTGGGGATTGCTTACAGGAGGGGCCGGCTGCCTGCC</dnaseq>|
 
sequence = <dnaseq>GTCTGAAGCTCTGGGAACGGGGGCAGAAAGCTGTATTTCGAAAAGCTTCCCACATGATTTTGATGCAAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCAATTTCTAGCACTTCCTGGAGATCAGGTCCCTGAAGAGCTATAAAAATCCAGCGGTGTTTCTGGCCACCTTTCCATGTGGTTTGTAGTGCACTGTCAGTCACACACGCCTGCAGAGCATGTGTGTGTTTGTGTTTGCACACGTGTGTGCATGTGTGTGAGTGGGTGCATGCATGCATGTGTATTTGGCTTTAAGGGAGGCTCTCATATTGCATTACCTATGTTGCTAGTTTCTGGCTGCCAGTTTGCATTTCTTAGGCGGATTTTCTGATTCCAGGCTCGGGAGGGCTCCCCTGCACTGTATGTAATTGGGCACGAAGCCCGTGGTGGGGTGGATTTGGGTAATGGCAGGGCTGCATTCCTCCCATTCTTTTCTCACAGGAAAAAGTGCCTGGATATAACCCTGTGGTGGGGATTGCTTACAGGAGGGGCCGGCTGCCTGCC</dnaseq>|
 
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[[Category:Intronic(S)]][[Category:lnc-TEAD4-2]]
+
[[Category:Intronic(S)]][[Category:lnc-TEAD4-2]][[Category:NONHSAG010209]]

Revision as of 13:31, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000539784.1

Source

Gencode19

Same with

lnc-TEAD4-2:1,NONHSAT025504

Classification

intronic(S)

Length

562 nt

Genomic location

chr12+:3258963..3260642

Exon number

2

Exons

3258963..3259032,3260151..3260642

Genome context

Sequence
000001 GTCTGAAGCT CTGGGAACGG GGGCAGAAAG CTGTATTTCG AAAAGCTTCC CACATGATTT TGATGCAAAG CGTCCCCAGC 000080
000081 CTCCAGCCAG CTTCGCTAGC CAGGGACACA ATTGGATTGC AATTTCTAGC ACTTCCTGGA GATCAGGTCC CTGAAGAGCT 000160
000161 ATAAAAATCC AGCGGTGTTT CTGGCCACCT TTCCATGTGG TTTGTAGTGC ACTGTCAGTC ACACACGCCT GCAGAGCATG 000240
000241 TGTGTGTTTG TGTTTGCACA CGTGTGTGCA TGTGTGTGAG TGGGTGCATG CATGCATGTG TATTTGGCTT TAAGGGAGGC 000320
000321 TCTCATATTG CATTACCTAT GTTGCTAGTT TCTGGCTGCC AGTTTGCATT TCTTAGGCGG ATTTTCTGAT TCCAGGCTCG 000400
000401 GGAGGGCTCC CCTGCACTGT ATGTAATTGG GCACGAAGCC CGTGGTGGGG TGGATTTGGG TAATGGCAGG GCTGCATTCC 000480
000481 TCCCATTCTT TTCTCACAGG AAAAAGTGCC TGGATATAAC CCTGTGGTGG GGATTGCTTA CAGGAGGGGC CGGCTGCCTG 000560
000561 CC
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Predicted Small Protein

Name ENST00000539784.1_smProtein_194:388
Length 65
Molecular weight 7093.5765
Aromaticity 0.109375
Instability index 59.121875
Isoelectric point 8.46173095703
Runs 12
Runs residual 0.03890625
Runs probability 0.0558205264087
Amino acid sequence MWFVVHCQSHTPAEHVCVCVCTRVCMCVSGCMHACVFGFKGGSHIALPMLLVSGCQFAFL
RRIF
Secondary structure LEEEEEELLLLLLLEEEEEEEEEEEEEELLLEEEEEEELLLLLLEEEHHHHLLLHHHHHH
HHHL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLL
LLLL
PiMo oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiii
iiii